Wall clock time and date at job start Wed Apr 1 2020 05:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46873 * 2 1 4 4 N 1.46499 * 109.46824 * 240.00136 * 2 1 3 5 5 S 1.65603 * 119.99825 * 95.00080 * 4 2 1 6 6 C 1.81399 * 104.44925 * 64.99895 * 5 4 2 7 7 O 1.42110 * 104.27611 * 181.06853 * 5 4 2 8 8 O 1.42093 * 104.28078 * 308.92573 * 5 4 2 9 9 C 1.50701 * 109.46857 * 120.00466 * 2 1 3 10 10 O 1.21278 * 119.99613 * 120.00350 * 9 2 1 11 11 N 1.34771 * 120.00063 * 299.99426 * 9 2 1 12 12 C 1.46498 * 120.00336 * 180.02562 * 11 9 2 13 13 C 1.53000 * 109.47556 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.47057 * 180.02562 * 13 12 11 15 15 C 1.53350 * 109.40596 * 295.11739 * 14 13 12 16 16 C 1.53198 * 109.14641 * 178.68568 * 15 14 13 17 17 N 1.46925 * 108.89335 * 54.57862 * 16 15 14 18 18 C 1.36931 * 120.63201 * 126.29969 * 17 16 15 19 19 H 1.08005 * 119.99889 * 331.83485 * 18 17 16 20 20 C 1.38813 * 120.00220 * 151.82683 * 18 17 16 21 21 N 1.31618 * 120.00004 * 343.08678 * 20 18 17 22 22 Si 1.86806 * 119.99953 * 163.08567 * 20 18 17 23 23 H 1.48496 * 109.47191 * 90.00149 * 22 20 18 24 24 H 1.48501 * 109.46981 * 210.00196 * 22 20 18 25 25 H 1.48500 * 109.46794 * 329.99854 * 22 20 18 26 26 C 1.46925 * 118.73856 * 306.31536 * 17 16 15 27 27 C 1.53044 * 109.45598 * 174.99805 * 14 13 12 28 28 H 1.08999 * 109.47352 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46987 * 299.99878 * 1 2 3 30 30 H 1.08994 * 109.47072 * 59.99871 * 1 2 3 31 31 H 0.96997 * 120.00622 * 274.99679 * 4 2 1 32 32 H 1.09008 * 109.47460 * 59.99961 * 6 5 4 33 33 H 1.08999 * 109.47463 * 179.97438 * 6 5 4 34 34 H 1.08999 * 109.47359 * 300.00076 * 6 5 4 35 35 H 0.97000 * 119.99880 * 0.02562 * 11 9 2 36 36 H 1.08999 * 109.46795 * 59.99948 * 12 11 9 37 37 H 1.09000 * 109.46886 * 300.00778 * 12 11 9 38 38 H 1.08998 * 109.46953 * 59.99744 * 13 12 11 39 39 H 1.09007 * 109.46550 * 299.99837 * 13 12 11 40 40 H 1.08996 * 109.45963 * 55.02828 * 14 13 12 41 41 H 1.08996 * 109.68537 * 58.72333 * 15 14 13 42 42 H 1.09000 * 109.47180 * 298.52249 * 15 14 13 43 43 H 1.08997 * 109.58387 * 294.71773 * 16 15 14 44 44 H 1.08993 * 109.58533 * 174.43928 * 16 15 14 45 45 H 0.96996 * 119.99787 * 179.97438 * 21 20 18 46 46 H 1.08998 * 109.58495 * 173.39541 * 26 17 16 47 47 H 1.09000 * 109.58924 * 293.68296 * 26 17 16 48 48 H 1.08996 * 109.49900 * 61.41954 * 27 14 13 49 49 H 1.08999 * 109.52516 * 301.33794 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 16 2.4121 0.1773 -2.5505 6 6 3.8312 1.1873 -2.0441 7 8 2.8122 -0.8075 -3.4937 8 8 1.2751 0.9967 -2.7846 9 6 2.0323 -0.7105 1.2304 10 8 2.7296 -1.6965 1.1190 11 7 1.7068 -0.2501 2.4545 12 6 2.1955 -0.9404 3.6507 13 6 1.6850 -0.2197 4.9000 14 6 2.1959 -0.9404 6.1491 15 6 1.5874 -2.3466 6.2108 16 6 2.1282 -3.0744 7.4456 17 7 1.8700 -2.2507 8.6345 18 6 1.2103 -2.7725 9.7150 19 1 0.4980 -3.5727 9.5780 20 6 1.4570 -2.2731 10.9865 21 7 2.5349 -1.5526 11.2128 22 14 0.2590 -2.6236 12.3763 23 1 0.6521 -3.8798 13.0637 24 1 0.2840 -1.4997 13.3466 25 1 -1.1115 -2.7698 11.8234 26 6 2.3329 -0.8562 8.6419 27 6 1.7903 -0.1500 7.3954 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 2.1110 -1.6561 -1.1950 32 1 4.6459 0.5362 -1.7268 33 1 4.1610 1.7980 -2.8845 34 1 3.5400 1.8343 -1.2166 35 1 1.1489 0.5384 2.5435 36 1 3.2855 -0.9401 3.6505 37 1 1.8325 -1.9682 3.6507 38 1 0.5950 -0.2204 4.8999 39 1 2.0477 0.8083 4.9000 40 1 3.2823 -1.0169 6.1053 41 1 1.8571 -2.9031 5.3133 42 1 0.5022 -2.2702 6.2798 43 1 3.2012 -3.2319 7.3361 44 1 1.6267 -4.0363 7.5516 45 1 2.7071 -1.2033 12.1012 46 1 1.9642 -0.3536 9.5361 47 1 3.4226 -0.8328 8.6325 48 1 0.7033 -0.0942 7.4530 49 1 2.2038 0.8569 7.3388 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267946885.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:36 Heat of formation + Delta-G solvation = -100.813059 kcal Electronic energy + Delta-G solvation = -28599.209112 eV Core-core repulsion = 24495.601607 eV Total energy + Delta-G solvation = -4103.607506 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.32143 -38.09849 -37.58659 -36.44964 -36.06163 -35.44969 -33.66951 -31.46336 -30.49697 -30.02439 -29.87137 -28.46917 -25.58961 -24.35985 -23.05378 -21.99726 -21.03139 -20.50604 -20.06241 -19.11369 -18.55975 -17.57317 -16.81382 -16.75730 -16.49613 -15.99947 -15.79495 -15.10879 -14.82482 -14.68495 -14.17748 -13.92532 -13.76884 -13.70498 -13.62657 -13.51705 -13.34740 -12.95515 -12.87754 -12.58789 -12.56918 -12.47058 -12.26138 -12.24612 -12.16642 -11.63391 -11.58769 -11.37733 -11.25929 -10.92135 -10.70167 -10.53384 -10.43788 -10.22649 -10.18003 -9.95571 -9.84867 -9.50106 -9.42141 -9.26124 -8.46741 -6.65468 -5.78941 -3.20917 -0.24531 2.08803 2.21656 2.83963 3.32799 3.36410 3.43438 3.45785 3.67800 4.02813 4.22358 4.31023 4.42702 4.49489 4.51211 4.74888 4.87563 4.97749 5.14019 5.22949 5.25417 5.36008 5.42378 5.43124 5.54909 5.70579 5.72078 5.74841 5.95059 5.97519 6.05440 6.17093 6.24149 6.35390 6.47921 6.53006 6.61919 6.69074 6.81015 6.84846 7.00898 7.14611 7.37675 7.66062 7.79438 7.83078 8.45831 9.22123 9.85903 10.42941 11.29576 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.036170 B = 0.001633 C = 0.001631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.940360 B =17144.193334 C =17167.255096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.135 3.865 3 H 0.107 0.893 4 N -1.101 6.101 5 S 2.616 3.384 6 C -0.676 4.676 7 O -0.954 6.954 8 O -0.953 6.953 9 C 0.505 3.495 10 O -0.529 6.529 11 N -0.724 5.724 12 C 0.115 3.885 13 C -0.126 4.126 14 C -0.075 4.075 15 C -0.130 4.130 16 C 0.144 3.856 17 N -0.593 5.593 18 C -0.251 4.251 19 H 0.064 0.936 20 C 0.000 4.000 21 N -0.904 5.904 22 Si 0.901 3.099 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.170 3.830 27 C -0.134 4.134 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.427 0.573 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.126 0.874 35 H 0.401 0.599 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.051 0.949 42 H 0.057 0.943 43 H 0.016 0.984 44 H 0.051 0.949 45 H 0.253 0.747 46 H 0.086 0.914 47 H 0.016 0.984 48 H 0.054 0.946 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.588 9.338 -25.361 27.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.023 3.977 3 H 0.125 0.875 4 N -0.861 5.861 5 S 2.707 3.293 6 C -0.826 4.826 7 O -0.945 6.945 8 O -0.943 6.943 9 C 0.288 3.712 10 O -0.405 6.405 11 N -0.376 5.376 12 C -0.007 4.007 13 C -0.163 4.163 14 C -0.094 4.094 15 C -0.169 4.169 16 C 0.018 3.982 17 N -0.315 5.315 18 C -0.380 4.380 19 H 0.082 0.918 20 C -0.198 4.198 21 N -0.548 5.548 22 Si 0.731 3.269 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.044 3.956 27 C -0.173 4.173 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.264 0.736 32 H 0.151 0.849 33 H 0.149 0.851 34 H 0.145 0.855 35 H 0.236 0.764 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.034 0.966 44 H 0.070 0.930 45 H 0.063 0.937 46 H 0.104 0.896 47 H 0.034 0.966 48 H 0.073 0.927 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.464 8.824 -26.093 27.549 hybrid contribution -0.167 0.122 1.439 1.454 sum -0.632 8.945 -24.655 26.235 Atomic orbital electron populations 1.22303 0.92086 1.04154 1.04299 1.20632 0.96638 0.96055 0.84361 0.87530 1.55496 1.81669 1.20554 1.28408 1.04758 0.76442 0.74997 0.73075 1.30560 1.22146 1.16789 1.13082 1.93642 1.84469 1.57649 1.58707 1.93627 1.46305 1.70761 1.83636 1.20624 0.80621 0.85193 0.84749 1.90732 1.37382 1.25897 1.86479 1.46082 1.53483 1.32216 1.05785 1.21605 0.99463 0.96969 0.82695 1.21919 1.01294 0.99410 0.93727 1.21027 0.99790 0.95489 0.93075 1.22175 1.00423 0.95526 0.98766 1.20894 0.96665 0.93736 0.86942 1.44046 1.66818 1.07015 1.13667 1.19172 1.15662 1.18176 0.85015 0.91815 1.25045 0.96626 1.00925 0.97185 1.70032 1.24347 1.39374 1.21075 0.86318 0.81074 0.77409 0.82105 1.21417 1.21586 1.20528 1.20762 0.95529 0.84535 0.94743 1.22214 1.00821 0.97569 0.96702 0.91127 0.90760 0.89494 0.73554 0.84904 0.85104 0.85508 0.76420 0.91354 0.90751 0.91450 0.91723 0.91708 0.93082 0.92417 0.96622 0.93007 0.93689 0.89609 0.96555 0.92736 0.93457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.92 9.41 37.16 0.35 -0.57 16 2 C 0.13 0.80 3.09 -69.08 -0.21 0.59 16 3 H 0.11 0.29 7.15 -51.93 -0.37 -0.08 16 4 N -1.10 -7.27 5.15 -5.88 -0.03 -7.30 16 5 S 2.62 16.72 6.02 -107.50 -0.65 16.07 16 6 C -0.68 -2.23 10.78 101.05 1.09 -1.14 16 7 O -0.95 -9.82 18.08 -57.54 -1.04 -10.86 16 8 O -0.95 -8.49 17.11 -57.54 -0.98 -9.47 16 9 C 0.50 4.48 7.22 -10.99 -0.08 4.40 16 10 O -0.53 -6.81 15.99 5.56 0.09 -6.72 16 11 N -0.72 -5.59 5.45 -60.30 -0.33 -5.92 16 12 C 0.12 1.18 5.43 -4.04 -0.02 1.16 16 13 C -0.13 -1.33 4.80 -26.73 -0.13 -1.46 16 14 C -0.07 -1.11 2.15 -90.42 -0.19 -1.30 16 15 C -0.13 -2.11 5.16 -26.45 -0.14 -2.24 16 16 C 0.14 2.97 6.50 -3.71 -0.02 2.95 16 17 N -0.59 -14.63 2.99 -172.32 -0.52 -15.14 16 18 C -0.25 -6.83 9.58 -15.06 -0.14 -6.97 16 19 H 0.06 1.71 7.89 -52.48 -0.41 1.30 16 20 C 0.00 0.01 4.92 -17.43 -0.09 -0.07 16 21 N -0.90 -26.04 11.20 55.49 0.62 -25.42 16 22 Si 0.90 21.51 29.59 -169.99 -5.03 16.48 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 C 0.17 3.94 5.30 -3.71 -0.02 3.92 16 27 C -0.13 -2.35 5.36 -26.61 -0.14 -2.49 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.26 7.56 -51.93 -0.39 -0.13 16 30 H 0.09 0.52 7.42 -51.93 -0.39 0.13 16 31 H 0.43 3.10 8.17 -34.47 -0.28 2.82 16 32 H 0.13 0.40 8.14 -51.92 -0.42 -0.02 16 33 H 0.13 0.26 8.14 -51.92 -0.42 -0.16 16 34 H 0.13 0.22 7.44 -51.92 -0.39 -0.17 16 35 H 0.40 1.92 7.89 -40.82 -0.32 1.60 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.87 6.53 -51.93 -0.34 0.54 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.05 0.73 6.52 -51.93 -0.34 0.39 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 45 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 46 H 0.09 2.24 6.06 -51.93 -0.31 1.93 16 47 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 49 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 399.20 15.07 6.02 6.02 Total: -1.00 -36.69 399.20 -9.77 -46.46 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -8.17 Total: -0.96 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: 0.25 Total: -3.23 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: -0.25 Total: -53.78 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -1.94 Total: -27.05 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Atomic # 16 Polarization: 16.72 SS G_CDS: -0.65 Total: 16.07 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.69 -9.77 -46.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267946885.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.358 kcal (2) G-P(sol) polarization free energy of solvation -36.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds