Wall clock time and date at job start Wed Apr 1 2020 05:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46873 * 2 1 4 4 N 1.46499 * 109.46824 * 240.00136 * 2 1 3 5 5 S 1.65603 * 119.99825 * 95.00080 * 4 2 1 6 6 C 1.81399 * 104.44925 * 64.99895 * 5 4 2 7 7 O 1.42110 * 104.27611 * 181.06853 * 5 4 2 8 8 O 1.42093 * 104.28078 * 308.92573 * 5 4 2 9 9 C 1.50701 * 109.46857 * 120.00466 * 2 1 3 10 10 O 1.21278 * 119.99613 * 120.00350 * 9 2 1 11 11 N 1.34771 * 120.00063 * 299.99426 * 9 2 1 12 12 C 1.46498 * 120.00336 * 180.02562 * 11 9 2 13 13 C 1.53000 * 109.47556 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.47057 * 180.02562 * 13 12 11 15 15 C 1.53350 * 109.40596 * 295.11739 * 14 13 12 16 16 C 1.53198 * 109.14641 * 178.68568 * 15 14 13 17 17 N 1.46925 * 108.89335 * 54.57862 * 16 15 14 18 18 C 1.36931 * 120.63201 * 126.29969 * 17 16 15 19 19 H 1.08005 * 119.99889 * 331.83485 * 18 17 16 20 20 C 1.38813 * 120.00220 * 151.82683 * 18 17 16 21 21 N 1.31618 * 120.00004 * 343.08678 * 20 18 17 22 22 Si 1.86806 * 119.99953 * 163.08567 * 20 18 17 23 23 H 1.48496 * 109.47191 * 90.00149 * 22 20 18 24 24 H 1.48501 * 109.46981 * 210.00196 * 22 20 18 25 25 H 1.48500 * 109.46794 * 329.99854 * 22 20 18 26 26 C 1.46925 * 118.73856 * 306.31536 * 17 16 15 27 27 C 1.53044 * 109.45598 * 174.99805 * 14 13 12 28 28 H 1.08999 * 109.47352 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46987 * 299.99878 * 1 2 3 30 30 H 1.08994 * 109.47072 * 59.99871 * 1 2 3 31 31 H 0.96997 * 120.00622 * 274.99679 * 4 2 1 32 32 H 1.09008 * 109.47460 * 59.99961 * 6 5 4 33 33 H 1.08999 * 109.47463 * 179.97438 * 6 5 4 34 34 H 1.08999 * 109.47359 * 300.00076 * 6 5 4 35 35 H 0.97000 * 119.99880 * 0.02562 * 11 9 2 36 36 H 1.08999 * 109.46795 * 59.99948 * 12 11 9 37 37 H 1.09000 * 109.46886 * 300.00778 * 12 11 9 38 38 H 1.08998 * 109.46953 * 59.99744 * 13 12 11 39 39 H 1.09007 * 109.46550 * 299.99837 * 13 12 11 40 40 H 1.08996 * 109.45963 * 55.02828 * 14 13 12 41 41 H 1.08996 * 109.68537 * 58.72333 * 15 14 13 42 42 H 1.09000 * 109.47180 * 298.52249 * 15 14 13 43 43 H 1.08997 * 109.58387 * 294.71773 * 16 15 14 44 44 H 1.08993 * 109.58533 * 174.43928 * 16 15 14 45 45 H 0.96996 * 119.99787 * 179.97438 * 21 20 18 46 46 H 1.08998 * 109.58495 * 173.39541 * 26 17 16 47 47 H 1.09000 * 109.58924 * 293.68296 * 26 17 16 48 48 H 1.08996 * 109.49900 * 61.41954 * 27 14 13 49 49 H 1.08999 * 109.52516 * 301.33794 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 16 2.4121 0.1773 -2.5505 6 6 3.8312 1.1873 -2.0441 7 8 2.8122 -0.8075 -3.4937 8 8 1.2751 0.9967 -2.7846 9 6 2.0323 -0.7105 1.2304 10 8 2.7296 -1.6965 1.1190 11 7 1.7068 -0.2501 2.4545 12 6 2.1955 -0.9404 3.6507 13 6 1.6850 -0.2197 4.9000 14 6 2.1959 -0.9404 6.1491 15 6 1.5874 -2.3466 6.2108 16 6 2.1282 -3.0744 7.4456 17 7 1.8700 -2.2507 8.6345 18 6 1.2103 -2.7725 9.7150 19 1 0.4980 -3.5727 9.5780 20 6 1.4570 -2.2731 10.9865 21 7 2.5349 -1.5526 11.2128 22 14 0.2590 -2.6236 12.3763 23 1 0.6521 -3.8798 13.0637 24 1 0.2840 -1.4997 13.3466 25 1 -1.1115 -2.7698 11.8234 26 6 2.3329 -0.8562 8.6419 27 6 1.7903 -0.1500 7.3954 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 2.1110 -1.6561 -1.1950 32 1 4.6459 0.5362 -1.7268 33 1 4.1610 1.7980 -2.8845 34 1 3.5400 1.8343 -1.2166 35 1 1.1489 0.5384 2.5435 36 1 3.2855 -0.9401 3.6505 37 1 1.8325 -1.9682 3.6507 38 1 0.5950 -0.2204 4.8999 39 1 2.0477 0.8083 4.9000 40 1 3.2823 -1.0169 6.1053 41 1 1.8571 -2.9031 5.3133 42 1 0.5022 -2.2702 6.2798 43 1 3.2012 -3.2319 7.3361 44 1 1.6267 -4.0363 7.5516 45 1 2.7071 -1.2033 12.1012 46 1 1.9642 -0.3536 9.5361 47 1 3.4226 -0.8328 8.6325 48 1 0.7033 -0.0942 7.4530 49 1 2.2038 0.8569 7.3388 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267946885.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:35 Heat of formation + Delta-G solvation = -130.334876 kcal Electronic energy + Delta-G solvation = -28600.489274 eV Core-core repulsion = 24495.601607 eV Total energy + Delta-G solvation = -4104.887668 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.01437 -39.50390 -38.19972 -37.06395 -36.87041 -36.30014 -35.08701 -33.07610 -31.65322 -31.04032 -30.30323 -29.67424 -26.98076 -25.37295 -24.30030 -23.48687 -22.13516 -21.40420 -20.61440 -20.51290 -19.12783 -18.69147 -18.12134 -17.32009 -17.15357 -16.82150 -16.67318 -16.48556 -15.85078 -15.49636 -15.48260 -15.28039 -14.93662 -14.74351 -14.34256 -14.26000 -14.07431 -13.97824 -13.86027 -13.77583 -13.43523 -13.20607 -13.10322 -13.00033 -12.92787 -12.83067 -12.72864 -12.62660 -12.53240 -12.25920 -12.10602 -12.05607 -11.91719 -11.79125 -11.49305 -11.12941 -10.95993 -10.93445 -10.53155 -10.46961 -10.04644 -8.65173 -7.86584 -5.31815 -0.70133 1.46154 1.47203 1.56000 1.57263 1.61707 2.21682 2.51624 2.88145 3.24666 3.27540 3.54808 3.74415 3.87460 3.88719 3.97051 4.02421 4.06081 4.16603 4.18669 4.34811 4.38878 4.47910 4.61359 4.70382 4.77521 4.81903 4.86232 4.92638 4.93280 5.03340 5.06413 5.09613 5.14886 5.30777 5.34210 5.39074 5.43748 5.46869 5.50802 5.58419 5.69093 5.83933 5.93388 6.40738 6.56462 7.16777 7.22576 7.89244 8.40277 9.19299 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.036170 B = 0.001633 C = 0.001631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.940360 B =17144.193334 C =17167.255096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.134 3.866 3 H 0.146 0.854 4 N -1.107 6.107 5 S 2.625 3.375 6 C -0.659 4.659 7 O -1.001 7.001 8 O -0.983 6.983 9 C 0.505 3.495 10 O -0.574 6.574 11 N -0.710 5.710 12 C 0.122 3.878 13 C -0.109 4.109 14 C -0.070 4.070 15 C -0.117 4.117 16 C 0.136 3.864 17 N -0.612 5.612 18 C -0.262 4.262 19 H 0.063 0.937 20 C -0.053 4.053 21 N -0.936 5.936 22 Si 0.967 3.033 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.270 1.270 26 C 0.173 3.827 27 C -0.120 4.120 28 H 0.056 0.944 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.422 0.578 32 H 0.140 0.860 33 H 0.149 0.851 34 H 0.152 0.848 35 H 0.419 0.581 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.056 0.944 43 H 0.007 0.993 44 H 0.046 0.954 45 H 0.249 0.751 46 H 0.050 0.950 47 H -0.009 1.009 48 H 0.052 0.948 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.325 11.265 -26.581 28.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.023 3.977 3 H 0.164 0.836 4 N -0.865 5.865 5 S 2.720 3.280 6 C -0.813 4.813 7 O -0.992 6.992 8 O -0.973 6.973 9 C 0.290 3.710 10 O -0.452 6.452 11 N -0.363 5.363 12 C -0.002 4.002 13 C -0.147 4.147 14 C -0.090 4.090 15 C -0.156 4.156 16 C 0.011 3.989 17 N -0.335 5.335 18 C -0.392 4.392 19 H 0.081 0.919 20 C -0.248 4.248 21 N -0.582 5.582 22 Si 0.795 3.205 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.195 1.195 26 C 0.047 3.953 27 C -0.159 4.159 28 H 0.076 0.924 29 H 0.116 0.884 30 H 0.101 0.899 31 H 0.258 0.742 32 H 0.158 0.842 33 H 0.167 0.833 34 H 0.171 0.829 35 H 0.257 0.743 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.077 0.923 41 H 0.093 0.907 42 H 0.075 0.925 43 H 0.025 0.975 44 H 0.065 0.935 45 H 0.059 0.941 46 H 0.068 0.932 47 H 0.009 0.991 48 H 0.071 0.929 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.265 10.756 -27.349 29.415 hybrid contribution 0.142 -0.500 1.839 1.911 sum -1.122 10.256 -25.510 27.517 Atomic orbital electron populations 1.22334 0.91657 1.03649 1.05263 1.20849 0.96937 0.97397 0.82531 0.83639 1.55459 1.82153 1.20410 1.28525 1.04290 0.76795 0.74426 0.72449 1.30400 1.19619 1.16505 1.14747 1.93579 1.85169 1.59705 1.60727 1.93585 1.48571 1.70931 1.84167 1.21099 0.79723 0.84578 0.85586 1.90721 1.39496 1.27927 1.87103 1.45892 1.53225 1.32467 1.04755 1.21355 0.98905 0.96422 0.83529 1.21706 1.01859 0.99835 0.91256 1.20939 0.99488 0.94598 0.93949 1.22025 1.00077 0.96320 0.97139 1.21080 0.96368 0.93866 0.87572 1.44340 1.66860 1.08137 1.14213 1.19498 1.15632 1.17995 0.86124 0.91921 1.25807 0.98183 1.01353 0.99484 1.70189 1.26013 1.40724 1.21260 0.85293 0.79303 0.76905 0.79044 1.21312 1.21718 1.19509 1.20633 0.94020 0.84378 0.96247 1.22009 1.00409 0.98446 0.95034 0.92435 0.88375 0.89939 0.74170 0.84151 0.83260 0.82939 0.74316 0.92302 0.92305 0.90258 0.89434 0.92300 0.90680 0.92531 0.97454 0.93548 0.94143 0.93173 0.99075 0.92881 0.91010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.44 9.41 71.98 0.68 -0.76 16 2 C 0.13 1.23 3.09 44.25 0.14 1.37 16 3 H 0.15 0.16 7.15 -2.39 -0.02 0.14 16 4 N -1.11 -13.33 5.15 -172.52 -0.89 -14.22 16 5 S 2.62 30.58 6.02 -56.49 -0.34 30.24 16 6 C -0.66 -2.13 10.78 113.37 1.22 -0.91 16 7 O -1.00 -20.85 18.08 -127.65 -2.31 -23.16 16 8 O -0.98 -16.36 17.11 -127.65 -2.18 -18.55 16 9 C 0.51 7.76 7.22 87.66 0.63 8.39 16 10 O -0.57 -14.12 15.99 -3.02 -0.05 -14.17 16 11 N -0.71 -8.52 5.45 -463.08 -2.52 -11.05 16 12 C 0.12 2.14 5.43 86.38 0.47 2.61 16 13 C -0.11 -1.89 4.80 30.59 0.15 -1.74 16 14 C -0.07 -1.93 2.15 -10.66 -0.02 -1.96 16 15 C -0.12 -3.61 5.16 30.78 0.16 -3.45 16 16 C 0.14 5.66 6.50 86.36 0.56 6.22 16 17 N -0.61 -30.74 2.99 -699.09 -2.09 -32.83 16 18 C -0.26 -14.54 9.58 84.03 0.81 -13.73 16 19 H 0.06 3.41 7.89 -2.91 -0.02 3.38 16 20 C -0.05 -2.98 4.92 84.86 0.42 -2.57 16 21 N -0.94 -55.55 11.20 21.65 0.24 -55.30 16 22 Si 0.97 44.86 29.59 68.60 2.03 46.89 16 23 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 24 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 25 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 26 C 0.17 8.16 5.30 86.36 0.46 8.62 16 27 C -0.12 -4.03 5.36 30.68 0.16 -3.87 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.10 0.33 7.56 -2.39 -0.02 0.31 16 30 H 0.08 0.82 7.42 -2.39 -0.02 0.80 16 31 H 0.42 6.13 8.17 -96.75 -0.79 5.34 16 32 H 0.14 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.15 0.05 8.14 -2.39 -0.02 0.03 16 34 H 0.15 -0.22 7.44 -2.39 -0.02 -0.24 16 35 H 0.42 2.08 7.89 -92.71 -0.73 1.35 16 36 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.06 1.24 6.53 -2.39 -0.02 1.23 16 38 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 40 H 0.06 1.71 8.14 -2.39 -0.02 1.70 16 41 H 0.07 1.98 6.52 -2.39 -0.02 1.97 16 42 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 44 H 0.05 1.92 7.93 -2.39 -0.02 1.90 16 45 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 46 H 0.05 2.70 6.06 -2.39 -0.01 2.69 16 47 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 48 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 49 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -83.37 399.20 -2.85 -86.22 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -0.56 Total: 7.70 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: 5.83 Total: -1.78 kcal Atomic # 7 Polarization: -108.13 SS G_CDS: -5.26 Total: -113.40 kcal Atomic # 8 Polarization: -51.33 SS G_CDS: -4.54 Total: -55.87 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Atomic # 16 Polarization: 30.58 SS G_CDS: -0.34 Total: 30.24 kcal Total: -83.37 -2.85 -86.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267946885.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.117 kcal (2) G-P(sol) polarization free energy of solvation -83.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds