Wall clock time and date at job start Wed Apr 1 2020 05:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47092 * 2 1 4 4 N 1.46497 * 109.47419 * 120.00884 * 2 1 3 5 5 C 1.36937 * 119.99698 * 274.99594 * 4 2 1 6 6 H 1.08001 * 119.99895 * 0.02562 * 5 4 2 7 7 C 1.38816 * 119.99964 * 179.97438 * 5 4 2 8 8 N 1.31615 * 119.99955 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99650 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47286 * 60.00352 * 9 7 5 11 11 H 1.48508 * 109.46837 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47190 * 299.99901 * 9 7 5 13 13 C 1.53008 * 109.46973 * 240.00571 * 2 1 3 14 14 H 1.09003 * 109.49796 * 300.06719 * 13 2 1 15 15 C 1.53042 * 109.52401 * 60.10802 * 13 2 1 16 16 C 1.53036 * 109.54058 * 181.30039 * 15 13 2 17 17 C 1.53187 * 109.33909 * 298.68652 * 16 15 13 18 18 N 1.46928 * 108.77623 * 54.61900 * 17 16 15 19 19 C 1.34777 * 120.63052 * 126.36901 * 18 17 16 20 20 O 1.21288 * 119.99622 * 179.97438 * 19 18 17 21 21 C 1.50699 * 120.00134 * 0.02562 * 19 18 17 22 22 C 1.53001 * 109.46977 * 179.97438 * 21 19 18 23 23 N 1.46502 * 109.46705 * 179.97438 * 22 21 19 24 24 S 1.65600 * 119.99615 * 164.99977 * 23 22 21 25 25 C 1.81399 * 104.44866 * 65.00258 * 24 23 22 26 26 O 1.42103 * 104.27890 * 181.07320 * 24 23 22 27 27 O 1.42104 * 104.28265 * 308.92950 * 24 23 22 28 28 C 1.46927 * 118.73615 * 306.39196 * 18 17 16 29 29 H 1.09003 * 109.46951 * 299.98956 * 1 2 3 30 30 H 1.08993 * 109.47699 * 59.99400 * 1 2 3 31 31 H 1.09009 * 109.47190 * 179.97438 * 1 2 3 32 32 H 0.96998 * 120.00456 * 95.00121 * 4 2 1 33 33 H 0.97001 * 120.00095 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.42702 * 61.29456 * 15 13 2 35 35 H 1.09003 * 109.48758 * 301.34503 * 15 13 2 36 36 H 1.09002 * 109.49886 * 178.71774 * 16 15 13 37 37 H 1.09000 * 109.49395 * 58.65251 * 16 15 13 38 38 H 1.09000 * 109.58836 * 174.40473 * 17 16 15 39 39 H 1.08999 * 109.58980 * 294.83076 * 17 16 15 40 40 H 1.08999 * 109.46873 * 299.99877 * 21 19 18 41 41 H 1.08996 * 109.46994 * 60.00017 * 21 19 18 42 42 H 1.08999 * 109.47294 * 299.99711 * 22 21 19 43 43 H 1.08996 * 109.47170 * 60.00217 * 22 21 19 44 44 H 0.96997 * 120.00643 * 345.00200 * 23 22 21 45 45 H 1.09000 * 109.47518 * 59.99944 * 25 24 23 46 46 H 1.09007 * 109.47127 * 180.02562 * 25 24 23 47 47 H 1.08998 * 109.47290 * 299.99408 * 25 24 23 48 48 H 1.08999 * 109.58621 * 173.39948 * 28 18 17 49 49 H 1.09005 * 109.58884 * 293.81524 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6908 1.1960 5 6 2.1493 -0.0077 2.3756 6 1 1.8920 1.0401 2.4243 7 6 2.6115 -0.6624 3.5091 8 7 2.9245 -1.9394 3.4499 9 14 2.7894 0.2693 5.1184 10 1 1.4669 0.8060 5.5284 11 1 3.2985 -0.6492 6.1684 12 1 3.7447 1.3917 4.9376 13 6 2.0400 -0.7212 -1.2494 14 1 1.6759 -1.7486 -1.2505 15 6 1.5327 0.0010 -2.4997 16 6 2.0157 -0.7386 -3.7494 17 6 3.5473 -0.7391 -3.7784 18 7 4.0440 -1.3010 -2.5150 19 6 4.9159 -2.3288 -2.5163 20 8 5.3189 -2.7834 -1.4666 21 6 5.3910 -2.9122 -3.8220 22 6 6.3672 -4.0570 -3.5439 23 7 6.8285 -4.6245 -4.8133 24 16 8.1556 -5.6147 -4.8438 25 6 7.6525 -7.0752 -3.8928 26 8 8.3153 -5.9444 -6.2168 27 8 9.1542 -4.8842 -4.1449 28 6 3.5718 -0.7215 -1.2501 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8898 31 1 -0.3634 -1.0277 -0.0005 32 1 2.2491 -1.6319 1.1524 33 1 3.2472 -2.3969 4.2420 34 1 1.9169 1.0210 -2.5102 35 1 0.4430 0.0238 -2.4895 36 1 1.6351 -0.2367 -4.6390 37 1 1.6518 -1.7658 -3.7275 38 1 3.8968 -1.3486 -4.6118 39 1 3.9110 0.2821 -3.8922 40 1 4.5365 -3.2910 -4.3829 41 1 5.8938 -2.1396 -4.4037 42 1 7.2216 -3.6778 -2.9832 43 1 5.8648 -4.8297 -2.9621 44 1 6.3568 -4.4204 -5.6359 45 1 6.7881 -7.5385 -4.3685 46 1 8.4758 -7.7889 -3.8603 47 1 7.3916 -6.7757 -2.8778 48 1 3.9375 -1.3193 -0.4153 49 1 3.9375 0.3012 -1.1576 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271634346.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:26 Heat of formation + Delta-G solvation = -134.687071 kcal Electronic energy + Delta-G solvation = -29231.358328 eV Core-core repulsion = 25126.281935 eV Total energy + Delta-G solvation = -4105.076393 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.29287 -39.18634 -38.16997 -37.04986 -36.93958 -36.58601 -34.63289 -33.08990 -31.93540 -30.93195 -30.26299 -29.64391 -26.60081 -25.92054 -24.69483 -23.73526 -22.21196 -21.03505 -20.61737 -19.73808 -19.14091 -18.61284 -18.17646 -17.33627 -17.04314 -16.80807 -16.76751 -16.61135 -15.87500 -15.57088 -15.47803 -15.27841 -15.12165 -14.73485 -14.28885 -14.16790 -14.00571 -13.98788 -13.94856 -13.72510 -13.38537 -13.30750 -13.20895 -13.08625 -12.98168 -12.77323 -12.72959 -12.55874 -12.50148 -12.31940 -12.15736 -11.98514 -11.92308 -11.76784 -11.63636 -11.33955 -11.15975 -10.94004 -10.72520 -10.43598 -9.55959 -8.97057 -7.90835 -5.18785 -0.66745 1.45056 1.48404 1.54217 1.66529 1.68764 2.14073 2.57106 2.87612 3.28320 3.42432 3.53148 3.72192 3.85925 3.90613 4.01469 4.04253 4.12412 4.18834 4.19014 4.26246 4.35358 4.47107 4.49984 4.57336 4.63897 4.71662 4.83077 4.86916 4.89864 4.95731 4.97448 5.00838 5.06664 5.08155 5.10650 5.22451 5.31672 5.42043 5.51833 5.58159 5.59551 5.67503 6.16629 6.30510 6.51450 7.23965 7.35889 8.14625 8.35784 9.32467 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012154 B = 0.002443 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.175057 B =11457.750271 C =13262.783994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.171 3.829 3 H 0.044 0.956 4 N -0.736 5.736 5 C -0.233 4.233 6 H 0.076 0.924 7 C -0.080 4.080 8 N -0.971 5.971 9 Si 0.969 3.031 10 H -0.276 1.276 11 H -0.299 1.299 12 H -0.279 1.279 13 C -0.088 4.088 14 H 0.052 0.948 15 C -0.111 4.111 16 C -0.128 4.128 17 C 0.097 3.903 18 N -0.609 5.609 19 C 0.500 3.500 20 O -0.593 6.593 21 C -0.134 4.134 22 C 0.125 3.875 23 N -1.109 6.109 24 S 2.630 3.370 25 C -0.659 4.659 26 O -0.992 6.992 27 O -1.006 7.006 28 C 0.129 3.871 29 H 0.032 0.968 30 H 0.080 0.920 31 H 0.037 0.963 32 H 0.368 0.632 33 H 0.248 0.752 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.109 0.891 37 H 0.063 0.937 38 H 0.119 0.881 39 H 0.081 0.919 40 H 0.139 0.861 41 H 0.127 0.873 42 H 0.065 0.935 43 H 0.078 0.922 44 H 0.429 0.571 45 H 0.153 0.847 46 H 0.144 0.856 47 H 0.135 0.865 48 H 0.049 0.951 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.192 -4.002 -26.113 26.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.062 3.938 3 H 0.062 0.938 4 N -0.376 5.376 5 C -0.365 4.365 6 H 0.094 0.906 7 C -0.272 4.272 8 N -0.622 5.622 9 Si 0.798 3.202 10 H -0.203 1.203 11 H -0.226 1.226 12 H -0.206 1.206 13 C -0.108 4.108 14 H 0.070 0.930 15 C -0.149 4.149 16 C -0.165 4.165 17 C -0.024 4.024 18 N -0.341 5.341 19 C 0.289 3.711 20 O -0.473 6.473 21 C -0.175 4.175 22 C -0.002 4.002 23 N -0.870 5.870 24 S 2.725 3.275 25 C -0.812 4.812 26 O -0.982 6.982 27 O -0.996 6.996 28 C 0.006 3.994 29 H 0.051 0.949 30 H 0.099 0.901 31 H 0.056 0.944 32 H 0.200 0.800 33 H 0.056 0.944 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.127 0.873 37 H 0.082 0.918 38 H 0.137 0.863 39 H 0.100 0.900 40 H 0.157 0.843 41 H 0.145 0.855 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.266 0.734 45 H 0.172 0.828 46 H 0.162 0.838 47 H 0.154 0.846 48 H 0.068 0.932 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.334 -3.910 -25.730 26.130 hybrid contribution -0.334 -0.316 1.917 1.971 sum 2.001 -4.227 -23.813 24.268 Atomic orbital electron populations 1.22320 0.97486 1.00576 1.00914 1.20491 0.92956 0.94936 0.85373 0.93810 1.42662 1.78377 1.10147 1.06440 1.19559 1.34538 0.94062 0.88348 0.90644 1.25537 1.03326 0.96822 1.01469 1.69835 1.52809 1.10316 1.29224 0.85277 0.77944 0.77275 0.79681 1.20256 1.22588 1.20572 1.21576 0.93729 0.99588 0.95893 0.92953 1.21626 1.01623 0.99233 0.92402 1.21918 0.94582 1.01487 0.98562 1.22181 0.95060 1.00650 0.84532 1.48310 1.44107 1.33544 1.08189 1.21366 0.78341 0.79393 0.92006 1.90780 1.58456 1.61954 1.36139 1.21836 1.01882 0.99454 0.94279 1.20974 0.98326 0.96454 0.84429 1.55222 1.51029 1.65222 1.15556 1.03994 0.73053 0.76545 0.73906 1.30380 1.14587 1.20071 1.16210 1.93574 1.85558 1.85611 1.33497 1.93578 1.58619 1.70650 1.76717 1.21289 0.94611 0.97563 0.85970 0.94922 0.90107 0.94427 0.80039 0.94353 0.91041 0.90181 0.87319 0.91772 0.86254 0.90045 0.84328 0.85504 0.91692 0.90408 0.73402 0.82840 0.83781 0.84627 0.93207 0.92357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.13 9.14 71.98 0.66 -4.47 16 2 C 0.17 6.47 2.48 44.99 0.11 6.58 16 3 H 0.04 1.68 8.08 -2.39 -0.02 1.66 16 4 N -0.74 -37.57 4.52 -322.93 -1.46 -39.03 16 5 C -0.23 -13.14 9.93 84.03 0.83 -12.30 16 6 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 7 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16 8 N -0.97 -62.13 13.06 21.65 0.28 -61.84 16 9 Si 0.97 47.68 29.55 68.60 2.03 49.71 16 10 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 11 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 12 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 13 C -0.09 -2.67 1.97 -10.72 -0.02 -2.69 16 14 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 15 C -0.11 -2.14 4.86 30.62 0.15 -1.99 16 16 C -0.13 -1.60 6.08 30.67 0.19 -1.42 16 17 C 0.10 1.26 6.34 86.36 0.55 1.81 16 18 N -0.61 -15.08 2.97 -818.92 -2.43 -17.52 16 19 C 0.50 13.51 7.70 87.66 0.67 14.18 16 20 O -0.59 -23.49 15.40 -3.05 -0.05 -23.54 16 21 C -0.13 -1.86 4.19 29.85 0.13 -1.74 16 22 C 0.13 2.07 5.42 86.38 0.47 2.54 16 23 N -1.11 -12.44 5.89 -187.49 -1.10 -13.54 16 24 S 2.63 38.89 6.10 -56.49 -0.34 38.55 16 25 C -0.66 -5.30 10.89 113.37 1.23 -4.06 16 26 O -0.99 -20.08 18.08 -127.65 -2.31 -22.39 16 27 O -1.01 -25.13 17.50 -127.65 -2.23 -27.37 16 28 C 0.13 4.38 5.47 86.36 0.47 4.86 16 29 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.08 2.01 6.41 -2.39 -0.02 2.00 16 31 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.37 20.90 7.61 -92.71 -0.71 20.19 16 33 H 0.25 15.51 8.31 -92.71 -0.77 14.74 16 34 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.08 1.41 6.37 -2.39 -0.02 1.40 16 36 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.12 0.67 5.93 -2.39 -0.01 0.66 16 39 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.14 0.88 7.69 -2.39 -0.02 0.86 16 41 H 0.13 1.16 7.94 -2.39 -0.02 1.14 16 42 H 0.06 1.45 7.65 -2.39 -0.02 1.43 16 43 H 0.08 1.25 8.10 -2.39 -0.02 1.23 16 44 H 0.43 2.51 8.62 -96.75 -0.83 1.68 16 45 H 0.15 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.14 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.14 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.05 2.29 6.51 -2.39 -0.02 2.27 16 49 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 Total: -1.00 -91.10 400.96 -2.29 -93.39 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: -0.58 Total: 26.53 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: 5.91 Total: -2.95 kcal Atomic # 7 Polarization: -127.22 SS G_CDS: -4.71 Total: -131.93 kcal Atomic # 8 Polarization: -68.70 SS G_CDS: -4.59 Total: -73.29 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 2.03 Total: 49.71 kcal Atomic # 16 Polarization: 38.89 SS G_CDS: -0.34 Total: 38.55 kcal Total: -91.10 -2.29 -93.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271634346.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.294 kcal (2) G-P(sol) polarization free energy of solvation -91.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds