Wall clock time and date at job start Wed Apr 1 2020 05:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 N 1.46500 * 109.46998 * 239.99774 * 2 1 3 5 5 C 1.36935 * 120.00223 * 84.99587 * 4 2 1 6 6 H 1.08006 * 119.99875 * 0.02562 * 5 4 2 7 7 C 1.38806 * 120.00401 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00524 * 180.02562 * 7 5 4 9 9 Si 1.86809 * 119.99878 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47141 * 89.99847 * 9 7 5 11 11 H 1.48495 * 109.46722 * 209.99699 * 9 7 5 12 12 H 1.48493 * 109.46848 * 329.99429 * 9 7 5 13 13 C 1.52997 * 109.47127 * 119.99989 * 2 1 3 14 14 H 1.09003 * 109.49796 * 180.02562 * 13 2 1 15 15 C 1.53037 * 109.49723 * 300.15927 * 13 2 1 16 16 C 1.53048 * 109.54047 * 181.31675 * 15 13 2 17 17 C 1.53192 * 109.31039 * 298.63672 * 16 15 13 18 18 N 1.46927 * 108.77670 * 54.63100 * 17 16 15 19 19 C 1.34773 * 120.62609 * 126.41137 * 18 17 16 20 20 O 1.21283 * 120.00020 * 179.97438 * 19 18 17 21 21 C 1.50703 * 120.00325 * 359.97438 * 19 18 17 22 22 C 1.53005 * 109.47123 * 179.97438 * 21 19 18 23 23 N 1.46501 * 109.47115 * 179.97438 * 22 21 19 24 24 S 1.65599 * 119.99874 * 164.99966 * 23 22 21 25 25 C 1.81401 * 104.44782 * 65.00580 * 24 23 22 26 26 O 1.42106 * 104.27503 * 181.07578 * 24 23 22 27 27 O 1.42097 * 104.27920 * 308.93549 * 24 23 22 28 28 C 1.46922 * 118.73774 * 306.39131 * 18 17 16 29 29 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 30 30 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 32 32 H 0.97003 * 119.99995 * 265.00643 * 4 2 1 33 33 H 0.96997 * 120.00453 * 180.02562 * 8 7 5 34 34 H 1.09004 * 109.46208 * 301.33927 * 15 13 2 35 35 H 1.09000 * 109.46176 * 61.29551 * 15 13 2 36 36 H 1.09001 * 109.49963 * 178.68296 * 16 15 13 37 37 H 1.09002 * 109.52188 * 58.60340 * 16 15 13 38 38 H 1.08999 * 109.58548 * 294.84240 * 17 16 15 39 39 H 1.09003 * 109.58268 * 174.42120 * 17 16 15 40 40 H 1.08996 * 109.47269 * 299.99680 * 21 19 18 41 41 H 1.09000 * 109.46959 * 60.00448 * 21 19 18 42 42 H 1.09003 * 109.47271 * 300.00461 * 22 21 19 43 43 H 1.09003 * 109.46796 * 60.00115 * 22 21 19 44 44 H 0.97002 * 119.99804 * 345.00414 * 23 22 21 45 45 H 1.08998 * 109.47070 * 59.99547 * 25 24 23 46 46 H 1.09003 * 109.47336 * 179.97438 * 25 24 23 47 47 H 1.09007 * 109.47172 * 299.99784 * 25 24 23 48 48 H 1.08995 * 109.58709 * 293.81523 * 28 18 17 49 49 H 1.09006 * 109.69887 * 173.46479 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 2.1491 -0.0077 -2.3758 6 1 1.8925 1.0404 -2.4243 7 6 2.6122 -0.6619 -3.5090 8 7 2.7383 -0.0053 -4.6427 9 14 3.0566 -2.4744 -3.4250 10 1 1.8596 -3.2929 -3.7449 11 1 4.1323 -2.7662 -4.4063 12 1 3.5312 -2.8048 -2.0573 13 6 2.0401 -0.7212 1.2492 14 1 3.1301 -0.7211 1.2499 15 6 1.5270 -0.0026 2.4992 16 6 2.0634 -0.7038 3.7493 17 6 1.5534 -2.1481 3.7782 18 7 1.9181 -2.8038 2.5150 19 6 2.5956 -3.9689 2.5169 20 8 2.8904 -4.5006 1.4674 21 6 2.9870 -4.6110 3.8229 22 6 3.7400 -5.9136 3.5453 23 7 4.1209 -6.5375 4.8149 24 16 4.6111 -8.1190 4.8461 25 6 6.1558 -8.1329 3.8951 26 8 4.8685 -8.3791 6.2192 27 8 3.5892 -8.8165 4.1474 28 6 1.5297 -2.1656 1.2499 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.2490 -1.6319 -1.1526 33 1 3.0616 -0.4626 -5.4347 34 1 1.8683 1.0326 2.4888 35 1 0.4373 -0.0252 2.5095 36 1 1.7167 -0.1776 4.6387 37 1 3.1533 -0.7032 3.7279 38 1 0.4693 -2.1505 3.8915 39 1 2.0111 -2.6806 4.6119 40 1 3.6294 -3.9320 4.3835 41 1 2.0907 -4.8267 4.4046 42 1 3.0973 -6.5925 2.9848 43 1 4.6362 -5.6983 2.9634 44 1 4.0860 -6.0242 5.6373 45 1 6.8811 -7.4725 4.3705 46 1 6.5541 -9.1470 3.8638 47 1 5.9606 -7.7873 2.8799 48 1 0.4437 -2.1696 1.1570 49 1 1.9699 -2.7091 0.4139 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271634351.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:32 Heat of formation + Delta-G solvation = -130.431862 kcal Electronic energy + Delta-G solvation = -29428.223609 eV Core-core repulsion = 25323.331736 eV Total energy + Delta-G solvation = -4104.891873 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.39688 -39.36121 -38.18399 -37.07931 -37.03203 -36.60641 -34.69381 -33.30450 -32.06452 -31.26736 -30.27856 -29.48346 -26.64602 -26.16553 -24.55893 -24.11542 -22.26711 -20.97196 -20.49563 -19.69344 -19.59098 -18.63115 -18.21411 -17.34466 -17.06577 -16.98125 -16.75507 -16.57246 -16.01756 -15.83946 -15.51655 -15.23904 -15.02032 -14.94882 -14.42063 -14.33604 -14.12856 -14.04625 -13.98503 -13.86606 -13.54922 -13.29310 -13.21996 -13.12843 -13.09655 -12.96029 -12.73915 -12.64994 -12.56746 -12.35350 -12.00581 -11.94579 -11.86214 -11.84360 -11.72897 -11.39812 -11.23620 -11.00100 -10.79720 -10.44950 -9.58148 -9.32496 -8.05383 -5.36051 -0.68071 1.32781 1.35318 1.41311 1.61337 1.67009 2.09470 2.43248 2.86593 3.26730 3.27020 3.49468 3.54800 3.73898 3.89233 3.91219 4.01863 4.08094 4.11135 4.17324 4.18728 4.31548 4.40138 4.48379 4.53505 4.61504 4.64889 4.71776 4.83040 4.85903 4.89967 4.93199 4.94619 5.06462 5.08627 5.12570 5.19356 5.23133 5.38329 5.47550 5.56261 5.67861 5.77210 6.14828 6.20449 6.45387 7.06536 7.17180 7.85281 8.01005 9.16535 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012305 B = 0.002664 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.018676 B =10506.879236 C =12339.356251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.174 3.826 3 H 0.047 0.953 4 N -0.756 5.756 5 C -0.220 4.220 6 H 0.063 0.937 7 C -0.059 4.059 8 N -0.982 5.982 9 Si 0.942 3.058 10 H -0.282 1.282 11 H -0.293 1.293 12 H -0.266 1.266 13 C -0.093 4.093 14 H 0.053 0.947 15 C -0.111 4.111 16 C -0.129 4.129 17 C 0.098 3.902 18 N -0.608 5.608 19 C 0.502 3.498 20 O -0.594 6.594 21 C -0.136 4.136 22 C 0.124 3.876 23 N -1.109 6.109 24 S 2.630 3.370 25 C -0.660 4.660 26 O -0.993 6.993 27 O -1.005 7.005 28 C 0.116 3.884 29 H 0.029 0.971 30 H 0.050 0.950 31 H 0.083 0.917 32 H 0.361 0.639 33 H 0.257 0.743 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.108 0.892 37 H 0.061 0.939 38 H 0.086 0.914 39 H 0.119 0.881 40 H 0.138 0.862 41 H 0.128 0.872 42 H 0.067 0.933 43 H 0.077 0.923 44 H 0.429 0.571 45 H 0.152 0.848 46 H 0.143 0.857 47 H 0.136 0.864 48 H 0.080 0.920 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.431 -9.534 30.031 31.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.066 3.934 3 H 0.065 0.935 4 N -0.400 5.400 5 C -0.351 4.351 6 H 0.081 0.919 7 C -0.251 4.251 8 N -0.634 5.634 9 Si 0.771 3.229 10 H -0.208 1.208 11 H -0.220 1.220 12 H -0.192 1.192 13 C -0.113 4.113 14 H 0.072 0.928 15 C -0.149 4.149 16 C -0.166 4.166 17 C -0.023 4.023 18 N -0.340 5.340 19 C 0.291 3.709 20 O -0.475 6.475 21 C -0.176 4.176 22 C -0.003 4.003 23 N -0.871 5.871 24 S 2.726 3.274 25 C -0.813 4.813 26 O -0.983 6.983 27 O -0.995 6.995 28 C -0.007 4.007 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.102 0.898 32 H 0.194 0.806 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.126 0.874 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.137 0.863 40 H 0.156 0.844 41 H 0.146 0.854 42 H 0.085 0.915 43 H 0.096 0.904 44 H 0.266 0.734 45 H 0.171 0.829 46 H 0.161 0.839 47 H 0.155 0.845 48 H 0.098 0.902 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.115 -10.449 29.636 31.495 hybrid contribution 0.826 -0.382 -1.384 1.656 sum 2.941 -10.832 28.252 30.400 Atomic orbital electron populations 1.22388 0.97015 1.01264 1.01170 1.20471 0.93335 0.95043 0.84518 0.93512 1.43001 1.79946 1.09604 1.07423 1.19072 1.34265 0.94572 0.87179 0.91885 1.25314 1.02859 1.01403 0.95499 1.69844 1.55177 1.37280 1.01055 0.85608 0.77822 0.82061 0.77421 1.20840 1.21971 1.19168 1.21629 0.99656 0.94266 0.95795 0.92847 1.21623 1.01752 0.99286 0.92261 1.21922 1.01132 0.95056 0.98539 1.22189 1.01954 0.93736 0.84429 1.48285 1.55486 1.22069 1.08189 1.21325 0.76873 0.80653 0.92002 1.90746 1.56546 1.64110 1.36076 1.21849 1.04369 0.97028 0.94382 1.20996 1.00134 0.94707 0.84434 1.55234 1.83765 1.32479 1.15612 1.03977 0.77062 0.72516 0.73882 1.30385 1.21330 1.13337 1.16238 1.93577 1.87271 1.83916 1.33561 1.93576 1.56210 1.72964 1.76707 1.21542 0.99994 0.92947 0.86226 0.95201 0.93131 0.89792 0.80594 0.93412 0.91045 0.89986 0.87392 0.91998 0.89543 0.86281 0.84448 0.85364 0.91484 0.90436 0.73415 0.82940 0.83859 0.84546 0.90241 0.93266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.99 8.79 71.98 0.63 -4.36 16 2 C 0.17 6.26 2.72 44.99 0.12 6.38 16 3 H 0.05 1.78 8.08 -2.39 -0.02 1.76 16 4 N -0.76 -35.98 4.85 -322.94 -1.57 -37.54 16 5 C -0.22 -12.72 10.41 84.03 0.87 -11.84 16 6 H 0.06 3.93 8.06 -2.91 -0.02 3.91 16 7 C -0.06 -3.61 5.50 84.86 0.47 -3.14 16 8 N -0.98 -64.38 13.97 21.65 0.30 -64.07 16 9 Si 0.94 49.01 27.74 68.60 1.90 50.92 16 10 H -0.28 -14.46 7.11 99.48 0.71 -13.75 16 11 H -0.29 -15.23 7.11 99.48 0.71 -14.52 16 12 H -0.27 -13.35 6.52 99.48 0.65 -12.71 16 13 C -0.09 -2.57 2.33 -10.72 -0.02 -2.60 16 14 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 15 C -0.11 -1.92 4.77 30.62 0.15 -1.77 16 16 C -0.13 -1.36 6.08 30.67 0.19 -1.17 16 17 C 0.10 0.97 6.34 86.36 0.55 1.52 16 18 N -0.61 -12.57 2.97 -818.91 -2.43 -15.00 16 19 C 0.50 11.53 7.70 87.66 0.67 12.21 16 20 O -0.59 -20.46 15.40 -3.04 -0.05 -20.50 16 21 C -0.14 -1.49 4.19 29.85 0.13 -1.36 16 22 C 0.12 1.71 5.42 86.38 0.47 2.18 16 23 N -1.11 -10.18 5.89 -187.47 -1.10 -11.28 16 24 S 2.63 34.21 6.10 -56.49 -0.34 33.87 16 25 C -0.66 -4.20 10.89 113.37 1.23 -2.97 16 26 O -0.99 -18.74 18.08 -127.65 -2.31 -21.05 16 27 O -1.00 -23.03 17.50 -127.65 -2.23 -25.27 16 28 C 0.12 3.30 5.21 86.36 0.45 3.75 16 29 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.05 1.55 6.32 -2.39 -0.02 1.54 16 31 H 0.08 1.94 6.46 -2.39 -0.02 1.92 16 32 H 0.36 17.38 4.02 -92.71 -0.37 17.01 16 33 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16 34 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.08 1.24 6.50 -2.39 -0.02 1.22 16 36 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.12 0.35 5.93 -2.39 -0.01 0.34 16 40 H 0.14 0.54 7.69 -2.39 -0.02 0.52 16 41 H 0.13 0.79 7.94 -2.39 -0.02 0.78 16 42 H 0.07 1.28 7.65 -2.39 -0.02 1.26 16 43 H 0.08 1.03 8.10 -2.39 -0.02 1.01 16 44 H 0.43 1.75 8.62 -96.74 -0.83 0.91 16 45 H 0.15 0.35 8.14 -2.39 -0.02 0.33 16 46 H 0.14 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.14 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.08 2.13 6.18 -2.39 -0.01 2.11 16 49 H 0.05 1.86 5.59 -2.38 -0.01 1.84 16 Total: -1.00 -92.81 392.31 -2.22 -95.03 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -0.30 Total: 18.08 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: 5.90 Total: -3.18 kcal Atomic # 7 Polarization: -123.10 SS G_CDS: -4.80 Total: -127.90 kcal Atomic # 8 Polarization: -62.23 SS G_CDS: -4.59 Total: -66.82 kcal Atomic # 14 Polarization: 49.01 SS G_CDS: 1.90 Total: 50.92 kcal Atomic # 16 Polarization: 34.21 SS G_CDS: -0.34 Total: 33.87 kcal Total: -92.81 -2.22 -95.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271634351.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.404 kcal (2) G-P(sol) polarization free energy of solvation -92.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds