Wall clock time and date at job start Wed Apr 1 2020 05:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 109.46619 * 2 1 4 4 C 1.53001 * 109.47143 * 119.99667 * 2 1 3 5 5 C 1.53005 * 109.46765 * 185.00161 * 4 2 1 6 6 C 1.52998 * 109.46616 * 180.02562 * 5 4 2 7 7 N 1.46504 * 109.46529 * 180.02562 * 6 5 4 8 8 C 1.36941 * 119.99740 * 180.02562 * 7 6 5 9 9 H 1.08001 * 119.99956 * 359.97438 * 8 7 6 10 10 C 1.38812 * 120.00021 * 179.97438 * 8 7 6 11 11 N 1.31611 * 119.99895 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99704 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.47456 * 359.97438 * 12 10 8 14 14 H 1.48507 * 109.47116 * 119.99992 * 12 10 8 15 15 H 1.48503 * 109.46912 * 239.99462 * 12 10 8 16 16 N 1.46500 * 109.47284 * 240.00236 * 2 1 3 17 17 C 1.34781 * 120.00007 * 84.99228 * 16 2 1 18 18 O 1.21280 * 120.00152 * 0.02562 * 17 16 2 19 19 C 1.50694 * 119.99784 * 180.02562 * 17 16 2 20 20 N 1.46501 * 109.47257 * 180.02562 * 19 17 16 21 21 C 1.47025 * 120.99463 * 84.99781 * 20 19 17 22 22 C 1.52759 * 109.48151 * 122.55698 * 21 20 19 23 23 C 1.52677 * 110.66828 * 64.31676 * 22 21 20 24 24 C 1.53278 * 109.77053 * 289.71502 * 23 22 21 25 25 S 1.66407 * 120.99436 * 265.02588 * 20 19 17 26 26 O 1.42098 * 104.53612 * 344.36336 * 25 20 19 27 27 O 1.42093 * 104.53429 * 112.73414 * 25 20 19 28 28 H 1.09008 * 109.46619 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47265 * 299.99822 * 1 2 3 30 30 H 1.09001 * 109.47631 * 60.00144 * 1 2 3 31 31 H 1.08996 * 109.47418 * 305.00449 * 4 2 1 32 32 H 1.08999 * 109.46925 * 65.00648 * 4 2 1 33 33 H 1.09000 * 109.46930 * 300.00454 * 5 4 2 34 34 H 1.08999 * 109.47001 * 60.00533 * 5 4 2 35 35 H 1.09006 * 109.47031 * 299.99415 * 6 5 4 36 36 H 1.08999 * 109.47431 * 60.00269 * 6 5 4 37 37 H 0.96993 * 120.00244 * 359.97438 * 7 6 5 38 38 H 0.97004 * 120.00164 * 180.02562 * 11 10 8 39 39 H 0.97003 * 119.99686 * 264.99900 * 16 2 1 40 40 H 1.09003 * 109.47417 * 60.00526 * 19 17 16 41 41 H 1.09002 * 109.47535 * 300.00616 * 19 17 16 42 42 H 1.09002 * 109.46956 * 242.56107 * 21 20 19 43 43 H 1.09001 * 109.46945 * 2.55864 * 21 20 19 44 44 H 1.09001 * 109.23619 * 184.62044 * 22 21 20 45 45 H 1.09000 * 109.23438 * 304.00477 * 22 21 20 46 46 H 1.09002 * 109.41802 * 169.62423 * 23 22 21 47 47 H 1.09000 * 109.42065 * 49.80960 * 23 22 21 48 48 H 1.08999 * 109.67800 * 302.03532 * 24 23 22 49 49 H 1.08995 * 109.68202 * 181.48651 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.6131 1.3137 6 6 4.0749 -1.3348 2.5626 7 7 5.5349 -1.2308 2.6245 8 6 6.2189 -1.8058 3.6623 9 1 5.6819 -2.3355 4.4353 10 6 7.6023 -1.7078 3.7208 11 7 8.2566 -1.0626 2.7786 12 14 8.5351 -2.4915 5.1368 13 1 7.5748 -3.1519 6.0569 14 1 9.4858 -3.5008 4.6049 15 1 9.2864 -1.4442 5.8744 16 7 2.0184 -0.6906 -1.1962 17 6 2.1470 -0.0182 -2.3572 18 8 1.8588 1.1587 -2.4116 19 6 2.6488 -0.7287 -3.5877 20 7 2.6986 0.2128 -4.7091 21 6 3.8663 1.0817 -4.9168 22 6 4.4439 0.8346 -6.3092 23 6 3.4421 1.2396 -7.3878 24 6 2.2681 0.2542 -7.4013 25 16 1.4350 0.3312 -5.7854 26 8 0.6636 -0.8407 -5.5601 27 8 0.8933 1.6251 -5.5584 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6054 -0.2617 2.1370 32 1 1.7517 -1.7714 1.2056 33 1 3.9995 -1.0726 0.4259 34 1 3.8532 0.4371 1.3573 35 1 3.6403 -0.8756 3.4505 36 1 3.7866 -2.3851 2.5186 37 1 6.0172 -0.7554 1.9302 38 1 9.2234 -0.9944 2.8192 39 1 2.2491 -1.6317 -1.1526 40 1 1.9759 -1.5505 -3.8326 41 1 3.6479 -1.1213 -3.3987 42 1 3.5630 2.1250 -4.8291 43 1 4.6233 0.8590 -4.1648 44 1 5.3560 1.4194 -6.4286 45 1 4.6800 -0.2240 -6.4174 46 1 3.9337 1.2310 -8.3607 47 1 3.0708 2.2430 -7.1793 48 1 2.6387 -0.7559 -7.5753 49 1 1.5669 0.5293 -8.1891 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277246061.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:46 Heat of formation + Delta-G solvation = -136.118274 kcal Electronic energy + Delta-G solvation = -29102.023961 eV Core-core repulsion = 24996.885507 eV Total energy + Delta-G solvation = -4105.138455 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.93246 -38.60860 -38.22615 -37.71229 -37.03994 -36.48123 -35.00699 -34.16753 -32.63628 -31.00401 -30.27617 -27.97103 -27.20571 -25.28202 -24.75382 -22.60252 -22.21677 -22.11961 -21.50594 -19.79321 -19.11864 -18.52639 -18.27902 -17.88575 -17.31396 -16.73977 -16.58743 -16.41693 -16.02757 -15.74889 -15.39239 -15.36611 -15.11347 -14.94269 -14.88040 -14.56384 -14.44096 -13.98845 -13.53460 -13.43996 -13.32578 -13.23543 -13.19333 -13.14194 -13.02728 -12.79997 -12.71986 -12.54675 -12.37938 -12.21071 -12.04719 -11.97117 -11.89749 -11.85343 -11.70385 -11.49155 -11.36957 -11.13393 -10.93448 -10.05782 -9.90856 -8.99418 -7.95232 -5.24128 -0.80233 1.47269 1.47912 1.48896 1.59040 1.64721 2.27382 2.56361 2.76555 3.18003 3.38661 3.43075 3.62548 3.74526 3.76126 3.86321 3.99942 4.09328 4.12590 4.20706 4.29647 4.36840 4.40657 4.44015 4.56365 4.59433 4.65102 4.69007 4.81422 4.85942 4.88359 4.92593 4.96230 4.99809 5.02750 5.12237 5.16088 5.28475 5.33849 5.39948 5.44553 5.50229 5.51896 5.61970 6.27818 6.60523 7.30239 7.33424 8.10520 8.32866 9.28726 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014480 B = 0.002187 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.215866 B =12797.988238 C =14247.667837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.143 3.857 3 H 0.061 0.939 4 C -0.108 4.108 5 C -0.111 4.111 6 C 0.150 3.850 7 N -0.750 5.750 8 C -0.245 4.245 9 H 0.076 0.924 10 C -0.078 4.078 11 N -0.970 5.970 12 Si 0.975 3.025 13 H -0.266 1.266 14 H -0.291 1.291 15 H -0.294 1.294 16 N -0.713 5.713 17 C 0.477 3.523 18 O -0.575 6.575 19 C 0.103 3.897 20 N -0.979 5.979 21 C 0.109 3.891 22 C -0.150 4.150 23 C -0.117 4.117 24 C -0.582 4.582 25 S 2.581 3.419 26 O -0.994 6.994 27 O -0.999 6.999 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.034 0.966 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.043 0.957 35 H 0.017 0.983 36 H 0.027 0.973 37 H 0.372 0.628 38 H 0.251 0.749 39 H 0.416 0.584 40 H 0.134 0.866 41 H 0.147 0.853 42 H 0.056 0.944 43 H 0.097 0.903 44 H 0.110 0.890 45 H 0.098 0.902 46 H 0.117 0.883 47 H 0.073 0.927 48 H 0.166 0.834 49 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.822 -0.729 -24.331 27.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.039 3.961 3 H 0.079 0.921 4 C -0.146 4.146 5 C -0.149 4.149 6 C 0.024 3.976 7 N -0.392 5.392 8 C -0.377 4.377 9 H 0.094 0.906 10 C -0.270 4.270 11 N -0.621 5.621 12 Si 0.803 3.197 13 H -0.190 1.190 14 H -0.218 1.218 15 H -0.222 1.222 16 N -0.367 5.367 17 C 0.262 3.738 18 O -0.454 6.454 19 C -0.026 4.026 20 N -0.817 5.817 21 C -0.016 4.016 22 C -0.189 4.189 23 C -0.155 4.155 24 C -0.716 4.716 25 S 2.681 3.319 26 O -0.984 6.984 27 O -0.989 6.989 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.053 0.947 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.035 0.965 36 H 0.045 0.955 37 H 0.204 0.796 38 H 0.060 0.940 39 H 0.253 0.747 40 H 0.152 0.848 41 H 0.164 0.836 42 H 0.075 0.925 43 H 0.115 0.885 44 H 0.128 0.872 45 H 0.116 0.884 46 H 0.136 0.864 47 H 0.091 0.909 48 H 0.184 0.816 49 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -13.992 0.091 -23.928 27.719 hybrid contribution 1.298 -0.194 0.482 1.398 sum -12.694 -0.103 -23.446 26.662 Atomic orbital electron populations 1.22114 0.94515 1.02983 1.01876 1.20917 0.94300 0.96579 0.84355 0.92105 1.21729 0.93819 1.02222 0.96812 1.21572 0.96183 0.99606 0.97506 1.20856 0.83161 0.97462 0.96161 1.42649 1.02517 1.65849 1.28231 1.19700 0.90008 1.26223 1.01791 0.90609 1.25600 0.97519 1.02481 1.01427 1.69822 1.07050 1.48840 1.36400 0.85056 0.78466 0.77370 0.78762 1.19007 1.21782 1.22152 1.46076 1.66706 1.14806 1.09091 1.22113 0.77451 0.87755 0.86434 1.90733 1.51226 1.17884 1.85582 1.21425 1.06863 0.91500 0.82778 1.57031 1.34640 1.50963 1.39047 1.21699 0.87391 0.93308 0.99183 1.22130 0.99949 1.05248 0.91554 1.21476 0.93822 0.97130 1.03109 1.30304 1.11442 1.11477 1.18406 1.05742 0.74173 0.73129 0.78892 1.93518 1.69074 1.50149 1.85684 1.93568 1.77450 1.43018 1.84823 0.90694 0.90395 0.94661 0.89497 0.89155 0.91777 0.93799 0.96547 0.95480 0.79614 0.93986 0.74731 0.84820 0.83576 0.92538 0.88503 0.87172 0.88374 0.86426 0.90853 0.81604 0.82704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 9.48 71.98 0.68 -2.66 16 2 C 0.14 3.36 2.57 44.99 0.12 3.48 16 3 H 0.06 1.79 7.58 -2.38 -0.02 1.77 16 4 C -0.11 -2.36 4.75 30.60 0.15 -2.22 16 5 C -0.11 -3.35 5.22 30.60 0.16 -3.19 16 6 C 0.15 5.78 6.26 86.38 0.54 6.32 16 7 N -0.75 -38.30 5.60 -343.44 -1.92 -40.22 16 8 C -0.25 -13.76 9.99 84.03 0.84 -12.92 16 9 H 0.08 4.08 7.83 -2.91 -0.02 4.05 16 10 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 11 N -0.97 -59.38 13.06 21.65 0.28 -59.10 16 12 Si 0.97 45.93 29.55 68.60 2.03 47.95 16 13 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 14 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 15 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 16 N -0.71 -15.19 4.53 -442.52 -2.00 -17.20 16 17 C 0.48 12.21 7.86 87.65 0.69 12.90 16 18 O -0.58 -20.42 16.09 -3.03 -0.05 -20.47 16 19 C 0.10 1.78 6.13 85.63 0.53 2.30 16 20 N -0.98 -17.86 2.47 -519.02 -1.28 -19.14 16 21 C 0.11 1.60 6.35 86.20 0.55 2.15 16 22 C -0.15 -1.01 5.80 30.41 0.18 -0.83 16 23 C -0.12 -0.76 5.78 30.58 0.18 -0.59 16 24 C -0.58 -4.34 6.59 72.08 0.47 -3.87 16 25 S 2.58 51.82 5.73 -56.49 -0.32 51.50 16 26 O -0.99 -24.68 16.51 -127.68 -2.11 -26.78 16 27 O -1.00 -30.50 18.10 -127.68 -2.31 -32.81 16 28 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 29 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.09 1.81 8.14 -2.39 -0.02 1.80 16 32 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.06 1.89 7.75 -2.39 -0.02 1.88 16 34 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.02 0.65 8.14 -2.38 -0.02 0.63 16 36 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.37 20.26 7.67 -92.71 -0.71 19.55 16 38 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 39 H 0.42 6.30 8.60 -92.71 -0.80 5.50 16 40 H 0.13 1.95 6.88 -2.39 -0.02 1.93 16 41 H 0.15 1.49 8.07 -2.39 -0.02 1.47 16 42 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.10 1.32 7.92 -2.39 -0.02 1.30 16 44 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 45 H 0.10 0.35 8.11 -2.39 -0.02 0.33 16 46 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 47 H 0.07 0.68 8.13 -2.39 -0.02 0.66 16 48 H 0.17 0.37 8.14 -2.39 -0.02 0.35 16 49 H 0.16 0.58 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -88.60 407.96 -2.71 -91.31 By element: Atomic # 1 Polarization: 28.68 SS G_CDS: -0.56 Total: 28.11 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: 5.54 Total: -3.15 kcal Atomic # 7 Polarization: -130.74 SS G_CDS: -4.93 Total: -135.67 kcal Atomic # 8 Polarization: -75.60 SS G_CDS: -4.47 Total: -80.06 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.95 kcal Atomic # 16 Polarization: 51.82 SS G_CDS: -0.32 Total: 51.50 kcal Total: -88.60 -2.71 -91.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277246061.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.805 kcal (2) G-P(sol) polarization free energy of solvation -88.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds