Wall clock time and date at job start Wed Apr 1 2020 05:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 110.63486 * 2 1 4 4 C 1.54317 * 110.72327 * 236.85869 * 2 1 3 5 5 N 1.47020 * 107.27058 * 263.65152 * 4 2 1 6 6 C 1.34784 * 125.64852 * 181.03488 * 5 4 2 7 7 O 1.21278 * 119.99982 * 174.61752 * 6 5 4 8 8 C 1.50701 * 119.99756 * 354.61924 * 6 5 4 9 9 C 1.52993 * 109.47495 * 81.85095 * 8 6 5 10 10 C 1.53001 * 109.46781 * 201.85252 * 8 6 5 11 11 N 1.46499 * 109.47262 * 321.84813 * 8 6 5 12 12 S 1.65605 * 120.00197 * 290.80509 * 11 8 6 13 13 C 1.81405 * 104.44753 * 63.17293 * 12 11 8 14 14 O 1.42105 * 104.27552 * 179.24269 * 12 11 8 15 15 O 1.42089 * 104.27583 * 307.10137 * 12 11 8 16 16 C 1.47426 * 108.70399 * 1.05892 * 5 4 2 17 17 C 1.54906 * 104.82909 * 335.86885 * 16 5 4 18 18 H 1.08994 * 111.00993 * 278.94040 * 17 16 5 19 19 C 1.53004 * 111.00291 * 155.08606 * 17 16 5 20 20 N 1.46493 * 109.46997 * 66.45380 * 19 17 16 21 21 C 1.36944 * 120.00047 * 180.02562 * 20 19 17 22 22 H 1.07999 * 119.99706 * 359.97438 * 21 20 19 23 23 C 1.38807 * 119.99903 * 180.02562 * 21 20 19 24 24 N 1.31615 * 120.00352 * 359.97438 * 23 21 20 25 25 Si 1.86809 * 119.99721 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.46946 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47141 * 119.99430 * 25 23 21 28 28 H 1.48504 * 109.46638 * 239.99351 * 25 23 21 29 29 H 1.08999 * 109.46883 * 181.69303 * 1 2 3 30 30 H 1.09004 * 109.47380 * 301.68855 * 1 2 3 31 31 H 1.08999 * 109.47568 * 61.69073 * 1 2 3 32 32 H 1.09000 * 109.88551 * 144.23256 * 4 2 1 33 33 H 1.09007 * 110.01136 * 23.13602 * 4 2 1 34 34 H 1.09008 * 109.47243 * 59.99575 * 9 8 6 35 35 H 1.09001 * 109.47440 * 179.97438 * 9 8 6 36 36 H 1.09002 * 109.47126 * 300.00294 * 9 8 6 37 37 H 1.09003 * 109.47253 * 52.43950 * 10 8 6 38 38 H 1.09004 * 109.47331 * 172.44152 * 10 8 6 39 39 H 1.08999 * 109.46975 * 292.44424 * 10 8 6 40 40 H 0.97001 * 120.00086 * 110.79663 * 11 8 6 41 41 H 1.08993 * 109.47202 * 58.53298 * 13 12 11 42 42 H 1.09000 * 109.46549 * 178.53907 * 13 12 11 43 43 H 1.08999 * 109.46747 * 298.53128 * 13 12 11 44 44 H 1.08992 * 110.36683 * 94.71191 * 16 5 4 45 45 H 1.09001 * 110.36322 * 217.03496 * 16 5 4 46 46 H 1.08995 * 109.47205 * 186.45592 * 19 17 16 47 47 H 1.09001 * 109.47060 * 306.45202 * 19 17 16 48 48 H 0.97005 * 120.00193 * 0.02562 * 20 19 17 49 49 H 0.97005 * 119.99909 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9141 1.0201 0.0000 4 6 2.0760 -0.7891 -1.2085 5 7 2.3757 -2.1506 -0.7415 6 6 2.8906 -3.1435 -1.4937 7 8 3.1890 -4.2008 -0.9801 8 6 3.0955 -2.9397 -2.9727 9 6 4.4071 -2.1877 -3.2071 10 6 3.1553 -4.2995 -3.6714 11 7 1.9813 -2.1596 -3.5171 12 16 0.4695 -2.8290 -3.6107 13 6 0.0083 -3.1481 -1.8855 14 8 -0.3376 -1.7963 -4.1598 15 8 0.6699 -4.0510 -4.3075 16 6 2.0192 -2.2501 0.6855 17 6 2.0828 -0.7948 1.2125 18 1 3.1096 -0.5042 1.4347 19 6 1.1869 -0.6163 2.4398 20 7 1.7209 -1.4048 3.5530 21 6 1.0807 -1.4013 4.7636 22 1 0.1825 -0.8170 4.8978 23 6 1.5871 -2.1480 5.8185 24 7 2.6820 -2.8597 5.6552 25 14 0.7134 -2.1438 7.4697 26 1 -0.4854 -1.2708 7.3932 27 1 0.2975 -3.5274 7.8132 28 1 1.6340 -1.6296 8.5154 29 1 -0.3633 -1.0272 0.0304 30 1 -0.3634 0.5398 0.8745 31 1 -0.3634 0.4873 -0.9047 32 1 2.9851 -0.3161 -1.5800 33 1 1.3271 -0.8250 -1.9998 34 1 5.2361 -2.7682 -2.8020 35 1 4.5555 -2.0407 -4.2769 36 1 4.3645 -1.2190 -2.7093 37 1 2.2807 -4.8887 -3.3952 38 1 3.1683 -4.1529 -4.7514 39 1 4.0593 -4.8259 -3.3651 40 1 2.1291 -1.2509 -3.8227 41 1 0.0295 -2.2136 -1.3250 42 1 -0.9960 -3.5704 -1.8502 43 1 0.7141 -3.8522 -1.4451 44 1 1.0117 -2.6505 0.7977 45 1 2.7383 -2.8765 1.2133 46 1 1.1603 0.4366 2.7202 47 1 0.1778 -0.9554 2.2055 48 1 2.5279 -1.9293 3.4326 49 1 3.0356 -3.3818 6.3924 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279162150.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:05 Heat of formation + Delta-G solvation = -74.586768 kcal Electronic energy + Delta-G solvation = -31538.732015 eV Core-core repulsion = 27436.261766 eV Total energy + Delta-G solvation = -4102.470248 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.99841 -38.65829 -37.40855 -36.63687 -36.19876 -34.76255 -32.92656 -31.30804 -31.01709 -29.81155 -29.09501 -27.64129 -26.88536 -25.84057 -23.89324 -22.49211 -21.59403 -20.08611 -19.44767 -19.33720 -18.11178 -17.72630 -16.95106 -16.57691 -16.25738 -16.08835 -15.72279 -15.09523 -14.95367 -14.76101 -14.12404 -13.87525 -13.67392 -13.61204 -13.31375 -13.24750 -13.15248 -12.92422 -12.73109 -12.69870 -12.47080 -12.46136 -12.33921 -12.29815 -12.08919 -11.99769 -11.80266 -11.65567 -11.30908 -11.11555 -11.05855 -10.90437 -10.84148 -10.53765 -10.49287 -10.42472 -10.01883 -9.73404 -9.49914 -8.92823 -8.73666 -6.97904 -5.80692 -3.10368 -0.05099 2.06810 2.51395 2.75030 3.40533 3.43447 3.45988 3.48488 3.89495 4.05977 4.32049 4.36454 4.45834 4.52733 4.56134 4.66778 4.70930 4.75654 4.87000 5.11990 5.20521 5.25082 5.30112 5.35905 5.37332 5.54116 5.56299 5.58158 5.65676 5.67606 5.72659 5.77095 5.86954 5.93140 6.03449 6.08683 6.14132 6.19429 6.26846 6.35579 6.49216 6.60214 6.73329 7.33401 7.65854 7.91628 8.37378 9.48949 10.05216 10.39118 11.41884 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017227 B = 0.003098 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.994782 B = 9035.749531 C = 9433.391769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.100 4.100 3 H 0.093 0.907 4 C 0.097 3.903 5 N -0.613 5.613 6 C 0.504 3.496 7 O -0.518 6.518 8 C 0.165 3.835 9 C -0.146 4.146 10 C -0.158 4.158 11 N -1.109 6.109 12 S 2.605 3.395 13 C -0.682 4.682 14 O -0.957 6.957 15 O -0.949 6.949 16 C 0.110 3.890 17 C -0.101 4.101 18 H 0.086 0.914 19 C 0.164 3.836 20 N -0.733 5.733 21 C -0.242 4.242 22 H 0.071 0.929 23 C -0.011 4.011 24 N -0.931 5.931 25 Si 0.906 3.094 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.291 1.291 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.421 0.579 41 H 0.139 0.861 42 H 0.133 0.867 43 H 0.131 0.869 44 H 0.075 0.925 45 H 0.087 0.913 46 H 0.024 0.976 47 H 0.026 0.974 48 H 0.384 0.616 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.160 5.038 -22.249 22.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.120 4.120 3 H 0.111 0.889 4 C -0.026 4.026 5 N -0.347 5.347 6 C 0.289 3.711 7 O -0.392 6.392 8 C 0.073 3.927 9 C -0.205 4.205 10 C -0.216 4.216 11 N -0.870 5.870 12 S 2.698 3.302 13 C -0.833 4.833 14 O -0.948 6.948 15 O -0.939 6.939 16 C -0.012 4.012 17 C -0.120 4.120 18 H 0.104 0.896 19 C 0.036 3.964 20 N -0.378 5.378 21 C -0.374 4.374 22 H 0.089 0.911 23 C -0.208 4.208 24 N -0.579 5.579 25 Si 0.737 3.263 26 H -0.206 1.206 27 H -0.218 1.218 28 H -0.219 1.219 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.257 0.743 41 H 0.157 0.843 42 H 0.151 0.849 43 H 0.150 0.850 44 H 0.093 0.907 45 H 0.106 0.894 46 H 0.041 0.959 47 H 0.044 0.956 48 H 0.217 0.783 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.607 4.065 -22.611 22.981 hybrid contribution 0.060 0.316 1.659 1.690 sum -0.548 4.381 -20.952 21.412 Atomic orbital electron populations 1.21989 0.94167 1.02383 1.02609 1.22253 0.96581 0.99507 0.93635 0.88890 1.22450 1.00344 0.82522 0.97260 1.48692 1.62434 1.11475 1.12101 1.20802 0.77936 0.83473 0.88843 1.90796 1.49153 1.25806 1.73488 1.20473 0.89006 0.94295 0.88967 1.22016 0.94240 1.00565 1.03631 1.22367 1.05055 0.93218 1.00975 1.55898 1.24922 1.27113 1.79069 1.05008 0.73052 0.74633 0.77503 1.30890 1.12909 1.13352 1.26105 1.93623 1.67498 1.57174 1.76467 1.93638 1.84029 1.46511 1.69699 1.22452 1.01651 0.98213 0.78863 1.22611 1.01239 0.93347 0.94819 0.89551 1.20657 0.94580 0.95217 0.85972 1.42379 1.31607 1.55650 1.08146 1.19234 1.06444 1.23437 0.88243 0.91136 1.24744 0.97810 0.99911 0.98312 1.69666 1.22696 1.33831 1.31703 0.86138 0.78646 0.77242 0.84258 1.20557 1.21837 1.21852 0.92294 0.90866 0.92346 0.90704 0.91973 0.90087 0.90194 0.91190 0.89829 0.90279 0.90324 0.74262 0.84258 0.84875 0.85008 0.90724 0.89442 0.95856 0.95606 0.78253 0.93487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 7.47 37.16 0.28 -1.21 16 2 C -0.10 -0.98 3.46 -88.79 -0.31 -1.28 16 3 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 4 C 0.10 0.83 4.33 -3.07 -0.01 0.82 16 5 N -0.61 -7.03 1.74 -170.52 -0.30 -7.32 16 6 C 0.50 6.24 4.04 -10.98 -0.04 6.20 16 7 O -0.52 -8.54 16.33 5.56 0.09 -8.45 16 8 C 0.16 1.50 0.78 -132.97 -0.10 1.39 16 9 C -0.15 -0.96 8.55 37.15 0.32 -0.65 16 10 C -0.16 -1.59 6.62 37.16 0.25 -1.35 16 11 N -1.11 -8.45 3.07 -0.40 0.00 -8.45 16 12 S 2.61 25.50 5.51 -107.50 -0.59 24.91 16 13 C -0.68 -6.49 8.78 101.05 0.89 -5.60 16 14 O -0.96 -11.38 18.08 -57.54 -1.04 -12.43 16 15 O -0.95 -11.80 14.55 -57.54 -0.84 -12.64 16 16 C 0.11 1.60 5.61 -2.53 -0.01 1.58 16 17 C -0.10 -1.39 2.97 -88.47 -0.26 -1.65 16 18 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 19 C 0.16 2.92 4.73 -4.04 -0.02 2.91 16 20 N -0.73 -17.57 5.45 -59.91 -0.33 -17.90 16 21 C -0.24 -6.57 9.99 -15.06 -0.15 -6.72 16 22 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 23 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 24 N -0.93 -27.81 13.06 55.49 0.72 -27.09 16 25 Si 0.91 22.09 29.55 -169.99 -5.02 17.06 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 28 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 29 H 0.06 0.60 5.54 -51.93 -0.29 0.31 16 30 H 0.07 0.75 7.09 -51.93 -0.37 0.39 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.49 6.68 -51.93 -0.35 0.15 16 33 H 0.06 0.44 4.34 -51.93 -0.23 0.21 16 34 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 35 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.40 6.57 -51.93 -0.34 0.05 16 37 H 0.08 0.99 6.17 -51.93 -0.32 0.67 16 38 H 0.08 0.71 8.06 -51.93 -0.42 0.29 16 39 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 40 H 0.42 2.11 7.99 -34.47 -0.28 1.83 16 41 H 0.14 1.28 3.31 -51.93 -0.17 1.10 16 42 H 0.13 1.01 8.14 -51.92 -0.42 0.59 16 43 H 0.13 1.47 5.98 -51.92 -0.31 1.16 16 44 H 0.07 1.13 7.51 -51.93 -0.39 0.74 16 45 H 0.09 1.54 7.99 -51.93 -0.41 1.13 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.03 0.46 6.66 -51.93 -0.35 0.12 16 48 H 0.38 9.80 7.53 -40.82 -0.31 9.49 16 49 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 374.15 15.07 5.64 5.64 Total: -1.00 -35.54 374.15 -8.40 -43.94 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -7.45 Total: 8.71 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: 0.72 Total: -5.99 kcal Atomic # 7 Polarization: -60.86 SS G_CDS: 0.10 Total: -60.76 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -1.79 Total: -33.51 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 16 Polarization: 25.50 SS G_CDS: -0.59 Total: 24.91 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.54 -8.40 -43.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279162150.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.651 kcal (2) G-P(sol) polarization free energy of solvation -35.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds