Wall clock time and date at job start Wed Apr 1 2020 05:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 110.63486 * 2 1 4 4 C 1.54317 * 110.72327 * 236.85869 * 2 1 3 5 5 N 1.47020 * 107.27058 * 263.65152 * 4 2 1 6 6 C 1.34784 * 125.64852 * 181.03488 * 5 4 2 7 7 O 1.21278 * 119.99982 * 174.61752 * 6 5 4 8 8 C 1.50701 * 119.99756 * 354.61924 * 6 5 4 9 9 C 1.52993 * 109.47495 * 81.85095 * 8 6 5 10 10 C 1.53001 * 109.46781 * 201.85252 * 8 6 5 11 11 N 1.46499 * 109.47262 * 321.84813 * 8 6 5 12 12 S 1.65605 * 120.00197 * 290.80509 * 11 8 6 13 13 C 1.81405 * 104.44753 * 63.17293 * 12 11 8 14 14 O 1.42105 * 104.27552 * 179.24269 * 12 11 8 15 15 O 1.42089 * 104.27583 * 307.10137 * 12 11 8 16 16 C 1.47426 * 108.70399 * 1.05892 * 5 4 2 17 17 C 1.54906 * 104.82909 * 335.86885 * 16 5 4 18 18 H 1.08994 * 111.00993 * 278.94040 * 17 16 5 19 19 C 1.53004 * 111.00291 * 155.08606 * 17 16 5 20 20 N 1.46493 * 109.46997 * 66.45380 * 19 17 16 21 21 C 1.36944 * 120.00047 * 180.02562 * 20 19 17 22 22 H 1.07999 * 119.99706 * 359.97438 * 21 20 19 23 23 C 1.38807 * 119.99903 * 180.02562 * 21 20 19 24 24 N 1.31615 * 120.00352 * 359.97438 * 23 21 20 25 25 Si 1.86809 * 119.99721 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.46946 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47141 * 119.99430 * 25 23 21 28 28 H 1.48504 * 109.46638 * 239.99351 * 25 23 21 29 29 H 1.08999 * 109.46883 * 181.69303 * 1 2 3 30 30 H 1.09004 * 109.47380 * 301.68855 * 1 2 3 31 31 H 1.08999 * 109.47568 * 61.69073 * 1 2 3 32 32 H 1.09000 * 109.88551 * 144.23256 * 4 2 1 33 33 H 1.09007 * 110.01136 * 23.13602 * 4 2 1 34 34 H 1.09008 * 109.47243 * 59.99575 * 9 8 6 35 35 H 1.09001 * 109.47440 * 179.97438 * 9 8 6 36 36 H 1.09002 * 109.47126 * 300.00294 * 9 8 6 37 37 H 1.09003 * 109.47253 * 52.43950 * 10 8 6 38 38 H 1.09004 * 109.47331 * 172.44152 * 10 8 6 39 39 H 1.08999 * 109.46975 * 292.44424 * 10 8 6 40 40 H 0.97001 * 120.00086 * 110.79663 * 11 8 6 41 41 H 1.08993 * 109.47202 * 58.53298 * 13 12 11 42 42 H 1.09000 * 109.46549 * 178.53907 * 13 12 11 43 43 H 1.08999 * 109.46747 * 298.53128 * 13 12 11 44 44 H 1.08992 * 110.36683 * 94.71191 * 16 5 4 45 45 H 1.09001 * 110.36322 * 217.03496 * 16 5 4 46 46 H 1.08995 * 109.47205 * 186.45592 * 19 17 16 47 47 H 1.09001 * 109.47060 * 306.45202 * 19 17 16 48 48 H 0.97005 * 120.00193 * 0.02562 * 20 19 17 49 49 H 0.97005 * 119.99909 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9141 1.0201 0.0000 4 6 2.0760 -0.7891 -1.2085 5 7 2.3757 -2.1506 -0.7415 6 6 2.8906 -3.1435 -1.4937 7 8 3.1890 -4.2008 -0.9801 8 6 3.0955 -2.9397 -2.9727 9 6 4.4071 -2.1877 -3.2071 10 6 3.1553 -4.2995 -3.6714 11 7 1.9813 -2.1596 -3.5171 12 16 0.4695 -2.8290 -3.6107 13 6 0.0083 -3.1481 -1.8855 14 8 -0.3376 -1.7963 -4.1598 15 8 0.6699 -4.0510 -4.3075 16 6 2.0192 -2.2501 0.6855 17 6 2.0828 -0.7948 1.2125 18 1 3.1096 -0.5042 1.4347 19 6 1.1869 -0.6163 2.4398 20 7 1.7209 -1.4048 3.5530 21 6 1.0807 -1.4013 4.7636 22 1 0.1825 -0.8170 4.8978 23 6 1.5871 -2.1480 5.8185 24 7 2.6820 -2.8597 5.6552 25 14 0.7134 -2.1438 7.4697 26 1 -0.4854 -1.2708 7.3932 27 1 0.2975 -3.5274 7.8132 28 1 1.6340 -1.6296 8.5154 29 1 -0.3633 -1.0272 0.0304 30 1 -0.3634 0.5398 0.8745 31 1 -0.3634 0.4873 -0.9047 32 1 2.9851 -0.3161 -1.5800 33 1 1.3271 -0.8250 -1.9998 34 1 5.2361 -2.7682 -2.8020 35 1 4.5555 -2.0407 -4.2769 36 1 4.3645 -1.2190 -2.7093 37 1 2.2807 -4.8887 -3.3952 38 1 3.1683 -4.1529 -4.7514 39 1 4.0593 -4.8259 -3.3651 40 1 2.1291 -1.2509 -3.8227 41 1 0.0295 -2.2136 -1.3250 42 1 -0.9960 -3.5704 -1.8502 43 1 0.7141 -3.8522 -1.4451 44 1 1.0117 -2.6505 0.7977 45 1 2.7383 -2.8765 1.2133 46 1 1.1603 0.4366 2.7202 47 1 0.1778 -0.9554 2.2055 48 1 2.5279 -1.9293 3.4326 49 1 3.0356 -3.3818 6.3924 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279162150.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:04 Heat of formation + Delta-G solvation = -102.301325 kcal Electronic energy + Delta-G solvation = -31539.933808 eV Core-core repulsion = 27436.261766 eV Total energy + Delta-G solvation = -4103.672042 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.95022 -39.66531 -38.31795 -37.51614 -37.09359 -36.43657 -34.22084 -32.85471 -31.75094 -30.78633 -30.29693 -28.35106 -27.77341 -27.21195 -25.37543 -23.85185 -22.58415 -20.92139 -20.50409 -20.32064 -19.13529 -18.90168 -18.36892 -17.41139 -17.30819 -17.01487 -16.66537 -16.57215 -16.07515 -15.73805 -15.36981 -15.25124 -14.89384 -14.54449 -14.36878 -14.25167 -14.06956 -13.90082 -13.81692 -13.66175 -13.55359 -13.36137 -13.18914 -13.15614 -12.95724 -12.94926 -12.86023 -12.81169 -12.66627 -12.57700 -12.17252 -12.12198 -11.90807 -11.85226 -11.73955 -11.57827 -11.46070 -11.35441 -10.92653 -10.38736 -9.73113 -8.98633 -7.95309 -5.23803 -0.85509 1.19390 1.46724 1.47219 1.57133 1.67275 1.78526 2.55332 2.63925 3.08226 3.20500 3.39218 3.47566 3.57674 3.63347 3.77986 3.86487 3.87543 3.92156 4.12983 4.15522 4.21323 4.32385 4.50451 4.53502 4.61770 4.72833 4.76061 4.77450 4.80075 4.81746 4.87270 4.92883 5.00154 5.04504 5.12886 5.21490 5.22782 5.26173 5.34479 5.36495 5.50587 5.51677 6.00119 6.26963 6.39258 6.94078 7.33360 8.10594 8.31066 9.28437 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017227 B = 0.003098 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.994782 B = 9035.749531 C = 9433.391769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.088 4.088 3 H 0.121 0.879 4 C 0.090 3.910 5 N -0.606 5.606 6 C 0.501 3.499 7 O -0.569 6.569 8 C 0.176 3.824 9 C -0.145 4.145 10 C -0.161 4.161 11 N -1.095 6.095 12 S 2.625 3.375 13 C -0.685 4.685 14 O -0.972 6.972 15 O -0.976 6.976 16 C 0.115 3.885 17 C -0.093 4.093 18 H 0.080 0.920 19 C 0.163 3.837 20 N -0.748 5.748 21 C -0.241 4.241 22 H 0.078 0.922 23 C -0.076 4.076 24 N -0.971 5.971 25 Si 0.970 3.030 26 H -0.263 1.263 27 H -0.297 1.297 28 H -0.294 1.294 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.109 0.891 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.438 0.562 41 H 0.145 0.855 42 H 0.149 0.851 43 H 0.113 0.887 44 H 0.064 0.936 45 H 0.045 0.955 46 H 0.031 0.969 47 H 0.031 0.969 48 H 0.371 0.629 49 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.775 7.714 -24.253 25.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.108 4.108 3 H 0.139 0.861 4 C -0.032 4.032 5 N -0.339 5.339 6 C 0.288 3.712 7 O -0.447 6.447 8 C 0.084 3.916 9 C -0.203 4.203 10 C -0.220 4.220 11 N -0.859 5.859 12 S 2.718 3.282 13 C -0.836 4.836 14 O -0.963 6.963 15 O -0.966 6.966 16 C -0.008 4.008 17 C -0.113 4.113 18 H 0.098 0.902 19 C 0.036 3.964 20 N -0.391 5.391 21 C -0.373 4.373 22 H 0.096 0.904 23 C -0.268 4.268 24 N -0.622 5.622 25 Si 0.800 3.200 26 H -0.187 1.187 27 H -0.224 1.224 28 H -0.221 1.221 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.127 0.873 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.124 0.876 36 H 0.105 0.895 37 H 0.080 0.920 38 H 0.112 0.888 39 H 0.095 0.905 40 H 0.278 0.722 41 H 0.163 0.837 42 H 0.168 0.832 43 H 0.132 0.868 44 H 0.082 0.918 45 H 0.064 0.936 46 H 0.048 0.952 47 H 0.049 0.951 48 H 0.203 0.797 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.266 6.829 -24.672 25.631 hybrid contribution 0.200 -0.498 2.249 2.312 sum -1.066 6.331 -22.423 23.324 Atomic orbital electron populations 1.22058 0.93923 1.01993 1.03720 1.22283 0.96744 1.00360 0.91367 0.86092 1.22796 1.02627 0.80532 0.97245 1.48673 1.61801 1.12790 1.10618 1.21500 0.76838 0.82681 0.90190 1.90772 1.51356 1.27871 1.74678 1.20337 0.90631 0.94544 0.86104 1.22090 0.91959 1.00668 1.05625 1.22392 1.04024 0.93646 1.01911 1.55606 1.23725 1.27890 1.78649 1.04315 0.73100 0.73756 0.77015 1.30912 1.13574 1.13309 1.25769 1.93602 1.68247 1.57498 1.76907 1.93611 1.84504 1.47852 1.70626 1.22141 0.99775 0.98098 0.80756 1.22436 1.00310 0.93659 0.94898 0.90194 1.20837 0.95380 0.94351 0.85807 1.42642 1.31185 1.56214 1.09014 1.19672 1.06193 1.22081 0.89305 0.90361 1.25544 0.98885 1.00504 1.01905 1.69830 1.24595 1.35377 1.32374 0.85119 0.77988 0.76937 0.80004 1.18742 1.22444 1.22135 0.93365 0.91629 0.89573 0.87349 0.89844 0.90797 0.87559 0.89497 0.91987 0.88790 0.90501 0.72230 0.83667 0.83223 0.86848 0.91797 0.93648 0.95159 0.95070 0.79699 0.94173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 7.47 71.98 0.54 -2.05 16 2 C -0.09 -1.44 3.46 -9.61 -0.03 -1.47 16 3 H 0.12 1.41 8.14 -2.38 -0.02 1.39 16 4 C 0.09 1.22 4.33 86.73 0.38 1.59 16 5 N -0.61 -13.35 1.74 -811.80 -1.41 -14.77 16 6 C 0.50 12.28 4.04 87.66 0.35 12.64 16 7 O -0.57 -19.72 16.33 -3.02 -0.05 -19.77 16 8 C 0.18 2.89 0.78 2.86 0.00 2.89 16 9 C -0.14 -1.45 8.55 71.98 0.62 -0.83 16 10 C -0.16 -3.15 6.62 71.98 0.48 -2.68 16 11 N -1.09 -13.57 3.07 -155.19 -0.48 -14.05 16 12 S 2.62 46.89 5.51 -56.49 -0.31 46.58 16 13 C -0.69 -12.47 8.78 113.37 0.99 -11.48 16 14 O -0.97 -20.62 18.08 -127.65 -2.31 -22.93 16 15 O -0.98 -23.52 14.55 -127.65 -1.86 -25.38 16 16 C 0.12 3.45 5.61 86.85 0.49 3.94 16 17 C -0.09 -2.51 2.97 -9.40 -0.03 -2.54 16 18 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 19 C 0.16 5.74 4.73 86.38 0.41 6.15 16 20 N -0.75 -36.55 5.45 -343.46 -1.87 -38.42 16 21 C -0.24 -13.13 9.99 84.03 0.84 -12.29 16 22 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16 23 C -0.08 -4.36 5.50 84.86 0.47 -3.89 16 24 N -0.97 -59.84 13.06 21.65 0.28 -59.56 16 25 Si 0.97 45.96 29.55 68.60 2.03 47.99 16 26 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 27 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 28 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 29 H 0.05 0.89 5.54 -2.39 -0.01 0.87 16 30 H 0.06 1.18 7.09 -2.38 -0.02 1.16 16 31 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.11 0.85 6.68 -2.39 -0.02 0.84 16 33 H 0.08 0.82 4.34 -2.38 -0.01 0.81 16 34 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.09 0.59 6.57 -2.39 -0.02 0.57 16 37 H 0.06 1.50 6.17 -2.39 -0.01 1.48 16 38 H 0.09 1.53 8.06 -2.38 -0.02 1.51 16 39 H 0.08 1.51 8.10 -2.39 -0.02 1.49 16 40 H 0.44 2.45 7.99 -96.74 -0.77 1.68 16 41 H 0.15 2.43 3.31 -2.39 -0.01 2.42 16 42 H 0.15 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.11 2.60 5.98 -2.39 -0.01 2.59 16 44 H 0.06 2.02 7.51 -2.39 -0.02 2.01 16 45 H 0.04 1.73 7.99 -2.39 -0.02 1.72 16 46 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.03 1.09 6.66 -2.39 -0.02 1.07 16 48 H 0.37 19.78 7.53 -92.70 -0.70 19.08 16 49 H 0.25 14.97 8.31 -92.70 -0.77 14.20 16 Total: -1.00 -80.25 374.15 -0.96 -81.21 By element: Atomic # 1 Polarization: 29.59 SS G_CDS: -0.48 Total: 29.11 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: 5.50 Total: -10.02 kcal Atomic # 7 Polarization: -123.32 SS G_CDS: -3.48 Total: -126.80 kcal Atomic # 8 Polarization: -63.86 SS G_CDS: -4.21 Total: -68.07 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Atomic # 16 Polarization: 46.89 SS G_CDS: -0.31 Total: 46.58 kcal Total: -80.25 -0.96 -81.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279162150.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.087 kcal (2) G-P(sol) polarization free energy of solvation -80.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds