Wall clock time and date at job start Wed Apr 1 2020 05:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47036 * 2 1 4 4 N 1.46505 * 109.46749 * 119.99636 * 2 1 3 5 5 S 1.65601 * 120.00046 * 264.99682 * 4 2 1 6 6 C 1.81400 * 104.44572 * 65.00101 * 5 4 2 7 7 O 1.42099 * 104.27868 * 181.07494 * 5 4 2 8 8 O 1.42098 * 104.27805 * 308.93512 * 5 4 2 9 9 C 1.50693 * 109.47263 * 239.99626 * 2 1 3 10 10 O 1.21282 * 120.00308 * 240.00362 * 9 2 1 11 11 N 1.34782 * 120.00275 * 59.99946 * 9 2 1 12 12 C 1.46496 * 120.00257 * 180.02562 * 11 9 2 13 13 H 1.09006 * 109.45993 * 324.97638 * 12 11 9 14 14 C 1.53041 * 109.45973 * 84.93336 * 12 11 9 15 15 C 1.52763 * 109.38531 * 181.26274 * 14 12 11 16 16 N 1.46926 * 109.00485 * 305.58951 * 15 14 12 17 17 C 1.36935 * 120.62861 * 233.58661 * 16 15 14 18 18 H 1.08005 * 120.00089 * 152.23511 * 17 16 15 19 19 C 1.38817 * 120.00030 * 332.22560 * 17 16 15 20 20 N 1.31617 * 119.99984 * 335.02887 * 19 17 16 21 21 Si 1.86798 * 120.00004 * 155.02428 * 19 17 16 22 22 H 1.48503 * 109.47164 * 60.00056 * 21 19 17 23 23 H 1.48500 * 109.47278 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.47135 * 300.00611 * 21 19 17 25 25 C 1.46927 * 118.74010 * 53.30656 * 16 15 14 26 26 C 1.53033 * 109.46234 * 205.00237 * 12 11 9 27 27 C 1.53005 * 109.49970 * 58.65926 * 26 12 11 28 28 C 1.53004 * 109.49706 * 298.56828 * 26 12 11 29 29 H 1.09002 * 109.47452 * 300.00431 * 1 2 3 30 30 H 1.08997 * 109.47413 * 60.00414 * 1 2 3 31 31 H 1.09005 * 109.47470 * 180.02562 * 1 2 3 32 32 H 0.96997 * 119.99887 * 85.00283 * 4 2 1 33 33 H 1.09002 * 109.46824 * 60.00835 * 6 5 4 34 34 H 1.09005 * 109.46687 * 179.97438 * 6 5 4 35 35 H 1.08993 * 109.47818 * 300.00035 * 6 5 4 36 36 H 0.96997 * 119.99358 * 359.97438 * 11 9 2 37 37 H 1.09009 * 109.49784 * 301.33724 * 14 12 11 38 38 H 1.08996 * 109.49842 * 61.43117 * 14 12 11 39 39 H 1.08994 * 109.51269 * 185.70927 * 15 14 12 40 40 H 1.09000 * 109.43512 * 65.41891 * 15 14 12 41 41 H 0.96998 * 120.00097 * 354.25184 * 20 19 17 42 42 H 1.09000 * 109.58429 * 66.43397 * 25 16 15 43 43 H 1.09005 * 109.58417 * 186.71723 * 25 16 15 44 44 H 1.08996 * 109.47064 * 179.83820 * 27 26 12 45 45 H 1.09003 * 109.47019 * 299.84511 * 27 26 12 46 46 H 1.09000 * 109.46725 * 59.83883 * 27 26 12 47 47 H 1.08998 * 109.46837 * 300.15928 * 28 26 12 48 48 H 1.09004 * 109.47134 * 60.15540 * 28 26 12 49 49 H 1.08998 * 109.47244 * 180.16108 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6906 1.1963 5 16 2.4121 0.1773 2.5505 6 6 0.8407 0.8991 3.0984 7 8 2.8605 -0.8027 3.4767 8 8 3.2874 1.1907 2.0751 9 6 2.0323 -0.7105 -1.2304 10 8 2.7295 -1.6966 -1.1191 11 7 1.7068 -0.2501 -2.4546 12 6 2.1946 -0.9411 -3.6506 13 1 3.1940 -1.3332 -3.4613 14 6 1.2506 -2.0960 -3.9930 15 6 1.7779 -2.8346 -5.2218 16 7 1.9725 -1.8701 -6.3129 17 6 1.3987 -2.0782 -7.5387 18 1 1.1504 -1.2367 -8.1686 19 6 1.1361 -3.3707 -7.9718 20 7 1.8356 -4.3790 -7.4960 21 14 -0.2100 -3.6789 -9.2296 22 1 0.1006 -2.9382 -10.4787 23 1 -0.2905 -5.1325 -9.5226 24 1 -1.5109 -3.2109 -8.6873 25 6 2.7895 -0.6750 -6.0620 26 6 2.2463 0.0422 -4.8221 27 6 3.1647 1.2130 -4.4661 28 6 0.8383 0.5665 -5.1113 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 2.1109 -1.6561 1.1950 33 1 0.1315 0.1011 3.3185 34 1 1.0077 1.4941 3.9963 35 1 0.4386 1.5354 2.3101 36 1 1.1488 0.5383 -2.5436 37 1 1.1962 -2.7838 -3.1491 38 1 0.2569 -1.7024 -4.2068 39 1 1.0569 -3.5924 -5.5283 40 1 2.7289 -3.3089 -4.9795 41 1 2.5882 -4.2122 -6.9073 42 1 3.8247 -0.9696 -5.8896 43 1 2.7376 -0.0094 -6.9237 44 1 3.2034 1.9116 -5.3018 45 1 2.7778 1.7230 -3.5838 46 1 4.1671 0.8385 -4.2588 47 1 0.1845 -0.2684 -5.3634 48 1 0.4522 1.0766 -4.2287 49 1 0.8751 1.2646 -5.9475 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281573002.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:27 Heat of formation + Delta-G solvation = -120.732423 kcal Electronic energy + Delta-G solvation = -30515.984542 eV Core-core repulsion = 26411.513268 eV Total energy + Delta-G solvation = -4104.471274 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.57033 -39.90716 -38.20251 -37.04250 -36.74818 -36.40608 -34.66909 -33.22694 -31.87036 -30.68367 -30.13998 -28.17228 -27.38612 -26.94202 -25.22145 -23.76420 -22.40703 -21.38306 -20.55128 -19.91568 -19.45530 -18.97025 -18.07596 -17.38348 -17.18114 -16.79246 -16.29682 -16.13723 -16.06196 -15.66190 -15.46806 -15.30192 -15.22247 -14.74772 -14.45565 -14.30726 -14.02649 -13.91576 -13.84880 -13.55753 -13.26110 -13.19434 -13.13262 -12.93101 -12.86832 -12.75575 -12.67577 -12.59144 -12.52748 -12.41950 -12.30351 -11.96867 -11.92442 -11.77248 -11.59814 -11.43139 -11.19264 -10.99601 -10.50483 -10.43198 -10.04122 -8.92492 -8.23104 -5.37955 -0.70760 1.56874 1.59550 1.63746 1.67038 1.85367 2.16448 2.67500 2.90438 3.23024 3.25997 3.45266 3.55538 3.63427 3.87037 3.93785 3.98476 4.06615 4.09533 4.18958 4.27035 4.34498 4.40514 4.51624 4.56963 4.72537 4.75000 4.77305 4.86636 4.91535 4.96439 5.00790 5.02225 5.06019 5.14346 5.15827 5.23037 5.30330 5.31528 5.37785 5.49564 5.65960 5.86531 5.92049 6.38686 6.55406 7.05059 7.23023 7.78718 8.24158 9.02278 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022527 B = 0.002527 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.680092 B =11079.067373 C =11388.593110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.129 3.871 3 H 0.140 0.860 4 N -1.108 6.108 5 S 2.613 3.387 6 C -0.645 4.645 7 O -1.004 7.004 8 O -1.001 7.001 9 C 0.503 3.497 10 O -0.579 6.579 11 N -0.701 5.701 12 C 0.175 3.825 13 H 0.049 0.951 14 C -0.127 4.127 15 C 0.163 3.837 16 N -0.608 5.608 17 C -0.345 4.345 18 H 0.058 0.942 19 C -0.080 4.080 20 N -0.947 5.947 21 Si 1.114 2.886 22 H -0.275 1.275 23 H -0.298 1.298 24 H -0.276 1.276 25 C 0.156 3.844 26 C -0.078 4.078 27 C -0.132 4.132 28 C -0.124 4.124 29 H 0.106 0.894 30 H 0.096 0.904 31 H 0.064 0.936 32 H 0.421 0.579 33 H 0.155 0.845 34 H 0.151 0.849 35 H 0.159 0.841 36 H 0.416 0.584 37 H 0.049 0.951 38 H 0.075 0.925 39 H 0.046 0.954 40 H -0.012 1.012 41 H 0.251 0.749 42 H 0.001 0.999 43 H 0.059 0.941 44 H 0.068 0.932 45 H 0.078 0.922 46 H 0.040 0.960 47 H 0.044 0.956 48 H 0.078 0.922 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.897 18.138 19.979 28.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.018 3.982 3 H 0.158 0.842 4 N -0.867 5.867 5 S 2.711 3.289 6 C -0.800 4.800 7 O -0.994 6.994 8 O -0.991 6.991 9 C 0.289 3.711 10 O -0.458 6.458 11 N -0.354 5.354 12 C 0.070 3.930 13 H 0.067 0.933 14 C -0.167 4.167 15 C 0.036 3.964 16 N -0.332 5.332 17 C -0.475 4.475 18 H 0.075 0.925 19 C -0.276 4.276 20 N -0.590 5.590 21 Si 0.939 3.061 22 H -0.201 1.201 23 H -0.224 1.224 24 H -0.202 1.202 25 C 0.030 3.970 26 C -0.080 4.080 27 C -0.189 4.189 28 C -0.181 4.181 29 H 0.124 0.876 30 H 0.114 0.886 31 H 0.083 0.917 32 H 0.256 0.744 33 H 0.173 0.827 34 H 0.169 0.831 35 H 0.178 0.822 36 H 0.255 0.745 37 H 0.067 0.933 38 H 0.093 0.907 39 H 0.065 0.935 40 H 0.006 0.994 41 H 0.061 0.939 42 H 0.018 0.982 43 H 0.078 0.922 44 H 0.087 0.913 45 H 0.097 0.903 46 H 0.059 0.941 47 H 0.063 0.937 48 H 0.097 0.903 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.337 16.556 19.567 26.954 hybrid contribution 0.862 0.234 0.316 0.947 sum -7.475 16.790 19.884 27.077 Atomic orbital electron populations 1.22520 0.89958 1.04677 1.06227 1.20917 0.97428 0.97496 0.82359 0.84216 1.55392 1.84324 1.20626 1.26333 1.04559 0.78335 0.73498 0.72537 1.30407 1.19760 1.15177 1.14645 1.93570 1.81669 1.60521 1.63668 1.93566 1.64237 1.61420 1.79881 1.21309 0.79535 0.84505 0.85752 1.90717 1.39554 1.28421 1.87081 1.45954 1.53157 1.31969 1.04297 1.20548 0.96257 0.92016 0.84180 0.93259 1.22182 1.00114 0.97540 0.96846 1.20578 0.96081 0.92142 0.87601 1.44268 1.57471 1.23117 1.08309 1.20202 1.37530 0.93863 0.95859 0.92471 1.27198 1.04268 0.92561 1.03575 1.70904 1.18670 1.34126 1.35269 0.82868 0.74042 0.75181 0.74017 1.20122 1.22430 1.20188 1.21081 0.91586 0.88333 0.95979 1.21178 0.98184 0.95017 0.93645 1.21775 0.98050 0.96591 1.02505 1.21720 0.94298 1.00441 1.01690 0.87560 0.88555 0.91685 0.74356 0.82660 0.83084 0.82235 0.74506 0.93253 0.90652 0.93501 0.99440 0.93920 0.98151 0.92216 0.91263 0.90280 0.94083 0.93659 0.90336 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.07 9.38 71.98 0.67 -0.39 16 2 C 0.13 1.79 3.22 44.24 0.14 1.93 16 3 H 0.14 1.28 7.48 -2.39 -0.02 1.27 16 4 N -1.11 -17.93 5.15 -172.52 -0.89 -18.82 16 5 S 2.61 38.39 6.08 -56.49 -0.34 38.04 16 6 C -0.65 -1.02 10.04 113.37 1.14 0.11 16 7 O -1.00 -23.97 18.08 -127.65 -2.31 -26.28 16 8 O -1.00 -22.51 17.39 -127.65 -2.22 -24.73 16 9 C 0.50 12.29 7.18 87.65 0.63 12.92 16 10 O -0.58 -20.46 15.65 -3.04 -0.05 -20.51 16 11 N -0.70 -15.46 4.18 -442.42 -1.85 -17.31 16 12 C 0.18 5.57 1.57 45.02 0.07 5.64 16 13 H 0.05 1.92 7.58 -2.38 -0.02 1.90 16 14 C -0.13 -4.76 5.29 30.53 0.16 -4.59 16 15 C 0.16 7.91 4.67 86.22 0.40 8.31 16 16 N -0.61 -29.76 2.30 -699.92 -1.61 -31.36 16 17 C -0.34 -18.73 9.49 84.04 0.80 -17.93 16 18 H 0.06 3.05 7.94 -2.91 -0.02 3.03 16 19 C -0.08 -4.54 4.68 84.86 0.40 -4.14 16 20 N -0.95 -58.74 12.41 21.65 0.27 -58.47 16 21 Si 1.11 50.32 29.99 68.60 2.06 52.38 16 22 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 23 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 24 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 25 C 0.16 6.28 5.20 86.36 0.45 6.73 16 26 C -0.08 -2.30 0.56 -52.11 -0.03 -2.33 16 27 C -0.13 -3.01 8.31 71.98 0.60 -2.42 16 28 C -0.12 -3.18 7.83 71.98 0.56 -2.62 16 29 H 0.11 -0.10 5.78 -2.39 -0.01 -0.11 16 30 H 0.10 0.29 7.56 -2.39 -0.02 0.28 16 31 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.42 8.12 8.17 -96.75 -0.79 7.33 16 33 H 0.16 -0.26 8.14 -2.39 -0.02 -0.28 16 34 H 0.15 -0.17 8.14 -2.39 -0.02 -0.19 16 35 H 0.16 -0.55 6.77 -2.39 -0.02 -0.57 16 36 H 0.42 5.81 6.08 -92.71 -0.56 5.24 16 37 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 38 H 0.07 2.67 6.33 -2.39 -0.02 2.65 16 39 H 0.05 2.58 6.30 -2.39 -0.02 2.56 16 40 H -0.01 -0.66 7.87 -2.39 -0.02 -0.68 16 41 H 0.25 16.08 6.71 -92.71 -0.62 15.46 16 42 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 43 H 0.06 2.37 7.93 -2.38 -0.02 2.35 16 44 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.08 1.36 7.37 -2.39 -0.02 1.35 16 46 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.04 1.46 5.97 -2.39 -0.01 1.45 16 48 H 0.08 1.32 6.58 -2.39 -0.02 1.30 16 49 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -88.94 387.53 -1.18 -90.12 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -0.23 Total: 15.72 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: 6.00 Total: 1.23 kcal Atomic # 7 Polarization: -121.88 SS G_CDS: -4.08 Total: -125.96 kcal Atomic # 8 Polarization: -66.95 SS G_CDS: -4.58 Total: -71.52 kcal Atomic # 14 Polarization: 50.32 SS G_CDS: 2.06 Total: 52.38 kcal Atomic # 16 Polarization: 38.39 SS G_CDS: -0.34 Total: 38.04 kcal Total: -88.94 -1.18 -90.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281573002.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.617 kcal (2) G-P(sol) polarization free energy of solvation -88.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds