Wall clock time and date at job start Wed Apr 1 2020 05:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09007 * 109.86812 * 2 1 4 4 C 1.54325 * 109.88042 * 121.01201 * 2 1 3 5 5 C 1.55155 * 102.94032 * 97.38192 * 4 2 1 6 6 H 1.08991 * 111.00672 * 277.39134 * 5 4 2 7 7 N 1.46505 * 111.00247 * 153.57428 * 5 4 2 8 8 C 1.36931 * 119.99788 * 158.18134 * 7 5 4 9 9 H 1.08002 * 120.00438 * 0.02562 * 8 7 5 10 10 C 1.38817 * 119.99680 * 179.72358 * 8 7 5 11 11 N 1.31614 * 119.99888 * 0.27479 * 10 8 7 12 12 Si 1.86803 * 119.99862 * 180.27671 * 10 8 7 13 13 H 1.48496 * 109.47141 * 59.99751 * 12 10 8 14 14 H 1.48490 * 109.47071 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.46993 * 300.00028 * 12 10 8 16 16 C 1.54914 * 101.61562 * 35.48447 * 5 4 2 17 17 N 1.47019 * 110.01375 * 238.90208 * 2 1 3 18 18 C 1.34777 * 125.65068 * 59.48238 * 17 2 1 19 19 O 1.21282 * 119.99807 * 359.97438 * 18 17 2 20 20 C 1.50699 * 119.99863 * 179.97438 * 18 17 2 21 21 C 1.53001 * 109.46920 * 180.02562 * 20 18 17 22 22 C 1.53000 * 109.47255 * 180.02562 * 21 20 18 23 23 C 1.53001 * 109.47255 * 179.97438 * 22 21 20 24 24 C 1.52992 * 109.47151 * 180.02562 * 23 22 21 25 25 S 1.81404 * 109.47383 * 180.02562 * 24 23 22 26 26 N 1.65596 * 104.44830 * 179.97438 * 25 24 23 27 27 O 1.42100 * 110.53871 * 291.62463 * 25 24 23 28 28 O 1.42099 * 110.53941 * 68.37104 * 25 24 23 29 29 H 1.08994 * 109.47493 * 298.98428 * 1 2 3 30 30 H 1.09002 * 109.47000 * 58.99201 * 1 2 3 31 31 H 1.09005 * 109.46509 * 178.98474 * 1 2 3 32 32 H 1.09000 * 110.71993 * 339.01870 * 4 2 1 33 33 H 1.09006 * 110.87089 * 215.81501 * 4 2 1 34 34 H 0.97000 * 119.99792 * 338.17928 * 7 5 4 35 35 H 0.97005 * 119.99715 * 179.97438 * 11 10 8 36 36 H 1.08998 * 110.36983 * 81.84862 * 16 5 4 37 37 H 1.09000 * 110.36647 * 204.17116 * 16 5 4 38 38 H 1.08998 * 109.47231 * 300.00063 * 20 18 17 39 39 H 1.09004 * 109.46706 * 60.00459 * 20 18 17 40 40 H 1.09003 * 109.47494 * 300.00413 * 21 20 18 41 41 H 1.09000 * 109.46862 * 60.00179 * 21 20 18 42 42 H 1.08998 * 109.46983 * 300.00065 * 22 21 20 43 43 H 1.09004 * 109.46620 * 60.00256 * 22 21 20 44 44 H 1.09004 * 109.46779 * 300.00112 * 23 22 21 45 45 H 1.09000 * 109.46862 * 60.00081 * 23 22 21 46 46 H 1.09009 * 109.47339 * 300.00117 * 24 23 22 47 47 H 1.09000 * 109.47347 * 60.00163 * 24 23 22 48 48 H 0.97003 * 119.99527 * 150.00553 * 26 25 24 49 49 H 0.97000 * 120.00492 * 329.99742 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 6 2.0548 -0.7477 1.2438 5 6 2.3557 -2.1673 0.6946 6 1 1.4506 -2.7736 0.6623 7 7 3.3980 -2.8263 1.4856 8 6 3.5046 -4.1914 1.4757 9 1 2.8207 -4.7823 0.8845 10 6 4.4958 -4.8156 2.2207 11 7 5.3296 -4.0955 2.9408 12 14 4.6462 -6.6774 2.2012 13 1 4.8968 -7.1392 0.8123 14 1 5.7748 -7.0920 3.0725 15 1 3.3859 -7.2811 2.7037 16 6 2.8616 -1.8481 -0.7344 17 7 2.0332 -0.7135 -1.1829 18 6 1.7795 -0.3852 -2.4652 19 8 1.0808 0.5731 -2.7189 20 6 2.3641 -1.2088 -3.5837 21 6 1.9258 -0.6262 -4.9288 22 6 2.5187 -1.4627 -6.0644 23 6 2.0799 -0.8805 -7.4096 24 6 2.6723 -1.7173 -8.5451 25 16 2.1527 -1.0266 -10.1400 26 7 2.8559 -2.0152 -11.2671 27 8 0.7571 -1.2118 -10.3326 28 8 2.7606 0.2393 -10.3568 29 1 -0.3634 0.4979 0.8989 30 1 -0.3633 0.5294 -0.8808 31 1 -0.3632 -1.0276 -0.0182 32 1 1.2908 -0.7885 2.0202 33 1 2.9636 -0.2804 1.6232 34 1 4.0125 -2.2956 2.0163 35 1 6.0220 -4.5317 3.4617 36 1 3.9134 -1.5631 -0.7097 37 1 2.7158 -2.7073 -1.3891 38 1 3.4519 -1.1912 -3.5176 39 1 2.0114 -2.2368 -3.5004 40 1 0.8379 -0.6433 -4.9952 41 1 2.2787 0.4018 -5.0118 42 1 3.6066 -1.4459 -5.9983 43 1 2.1654 -2.4905 -5.9812 44 1 0.9920 -0.8976 -7.4753 45 1 2.4329 0.1474 -7.4930 46 1 3.7603 -1.7006 -8.4795 47 1 2.3190 -2.7451 -8.4615 48 1 2.4270 -2.1532 -12.1262 49 1 3.6968 -2.4562 -11.0684 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284028389.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:54 Heat of formation + Delta-G solvation = -119.775452 kcal Electronic energy + Delta-G solvation = -28003.599119 eV Core-core repulsion = 23899.169342 eV Total energy + Delta-G solvation = -4104.429777 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.01250 -37.66886 -37.42934 -36.41604 -36.27394 -34.22730 -33.67342 -32.92393 -31.58258 -31.27732 -28.41290 -27.78970 -25.47733 -24.13413 -23.48351 -21.83335 -21.18005 -20.07468 -19.84026 -18.65498 -18.03596 -17.73589 -17.39860 -16.82537 -16.75814 -16.14677 -15.79767 -15.45021 -15.27232 -14.85739 -14.33919 -13.96976 -13.81260 -13.42725 -13.34028 -13.09290 -13.00950 -12.71538 -12.59922 -12.56302 -12.49898 -12.38126 -12.35071 -12.08775 -11.85513 -11.76469 -11.41189 -11.39393 -11.23172 -11.09493 -11.00350 -10.80979 -10.77356 -10.71281 -10.67410 -10.33467 -10.05407 -9.82925 -9.57834 -9.06908 -8.36620 -7.15642 -5.91197 -3.22349 -0.21143 2.41159 2.83539 3.17161 3.24758 3.34604 3.39980 3.40776 3.80741 3.99354 4.37143 4.44235 4.51328 4.63262 4.76756 4.90628 5.00039 5.08657 5.11415 5.21024 5.25454 5.31591 5.43464 5.46038 5.51278 5.52638 5.55654 5.57699 5.61962 5.70321 5.82470 5.82996 6.02495 6.08126 6.09503 6.16857 6.19012 6.26353 6.41742 6.49997 6.53132 6.63921 6.80757 7.56233 7.81780 8.26016 8.38684 9.38084 9.91812 10.26734 11.30595 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011536 B = 0.001858 C = 0.001644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.632836 B =15063.504574 C =17026.397809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.138 3.862 3 H 0.068 0.932 4 C -0.138 4.138 5 C 0.173 3.827 6 H 0.065 0.935 7 N -0.712 5.712 8 C -0.250 4.250 9 H 0.072 0.928 10 C -0.008 4.008 11 N -0.929 5.929 12 Si 0.909 3.091 13 H -0.285 1.285 14 H -0.290 1.290 15 H -0.285 1.285 16 C 0.073 3.927 17 N -0.610 5.610 18 C 0.525 3.475 19 O -0.554 6.554 20 C -0.137 4.137 21 C -0.106 4.106 22 C -0.112 4.112 23 C -0.114 4.114 24 C -0.621 4.621 25 S 2.613 3.387 26 N -1.253 6.253 27 O -0.963 6.963 28 O -0.961 6.961 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.387 0.613 35 H 0.258 0.742 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.134 0.866 47 H 0.137 0.863 48 H 0.420 0.580 49 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.338 4.251 -22.363 23.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.034 3.966 3 H 0.086 0.914 4 C -0.176 4.176 5 C 0.061 3.939 6 H 0.083 0.917 7 N -0.352 5.352 8 C -0.381 4.381 9 H 0.090 0.910 10 C -0.205 4.205 11 N -0.576 5.576 12 Si 0.740 3.260 13 H -0.212 1.212 14 H -0.216 1.216 15 H -0.211 1.211 16 C -0.053 4.053 17 N -0.344 5.344 18 C 0.314 3.686 19 O -0.433 6.433 20 C -0.177 4.177 21 C -0.145 4.145 22 C -0.151 4.151 23 C -0.153 4.153 24 C -0.751 4.751 25 S 2.704 3.296 26 N -0.925 5.925 27 O -0.953 6.953 28 O -0.951 6.951 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.222 0.778 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.101 0.899 45 H 0.101 0.899 46 H 0.152 0.848 47 H 0.155 0.845 48 H 0.249 0.751 49 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -5.353 5.458 -22.623 23.879 hybrid contribution 1.134 -1.829 0.310 2.174 sum -4.219 3.629 -22.313 22.996 Atomic orbital electron populations 1.22126 0.95086 1.02231 1.02382 1.21469 0.94332 0.95897 0.84855 0.91381 1.23002 1.01706 0.97045 0.95892 1.21276 0.92729 0.91298 0.88596 0.91666 1.42320 1.35316 1.04260 1.53314 1.19190 1.12263 0.82702 1.23951 0.91034 1.24780 0.98101 0.98041 0.99569 1.69647 1.20420 1.34389 1.33154 0.86252 0.77224 0.85190 0.77380 1.21165 1.21625 1.21131 1.23506 0.94930 0.87114 0.99773 1.48695 1.50155 1.30899 1.04682 1.20329 0.80659 0.84956 0.82623 1.90648 1.39559 1.29554 1.83534 1.21646 1.02420 1.00378 0.93248 1.21369 1.01704 0.99713 0.91665 1.21570 1.01277 0.99832 0.92414 1.21353 1.01586 0.98998 0.93330 1.30478 1.12358 1.12702 1.19564 1.04804 0.74270 0.74405 0.76075 1.53244 1.37469 1.69770 1.32006 1.93617 1.31187 1.85929 1.84528 1.93633 1.77864 1.39805 1.83750 0.92019 0.91498 0.92520 0.90196 0.90603 0.77837 0.93241 0.91246 0.91325 0.88968 0.88928 0.90955 0.90963 0.91239 0.91230 0.89918 0.89935 0.84753 0.84482 0.75076 0.76108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 9.06 37.16 0.34 -1.85 16 2 C 0.14 2.02 3.49 -66.95 -0.23 1.79 16 3 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 4 C -0.14 -2.10 6.13 -24.90 -0.15 -2.26 16 5 C 0.17 3.12 3.70 -65.78 -0.24 2.88 16 6 H 0.07 1.21 8.11 -51.93 -0.42 0.79 16 7 N -0.71 -16.29 5.26 -51.35 -0.27 -16.56 16 8 C -0.25 -6.41 9.97 -15.06 -0.15 -6.56 16 9 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 10 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 11 N -0.93 -26.49 13.06 55.49 0.72 -25.77 16 12 Si 0.91 21.11 29.55 -169.99 -5.02 16.09 16 13 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 16 C 0.07 1.16 6.39 -2.50 -0.02 1.15 16 17 N -0.61 -9.22 3.09 -162.98 -0.50 -9.72 16 18 C 0.53 7.82 7.63 -10.99 -0.08 7.73 16 19 O -0.55 -9.68 14.89 5.56 0.08 -9.60 16 20 C -0.14 -1.52 4.71 -27.88 -0.13 -1.65 16 21 C -0.11 -1.05 4.50 -26.73 -0.12 -1.17 16 22 C -0.11 -0.80 5.21 -26.73 -0.14 -0.94 16 23 C -0.11 -0.74 5.22 -26.73 -0.14 -0.88 16 24 C -0.62 -2.50 6.17 37.15 0.23 -2.27 16 25 S 2.61 16.36 5.97 -107.50 -0.64 15.71 16 26 N -1.25 -3.78 9.36 60.35 0.57 -3.22 16 27 O -0.96 -9.88 18.10 -57.54 -1.04 -10.92 16 28 O -0.96 -10.05 18.10 -57.54 -1.04 -11.09 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.07 1.00 6.77 -51.93 -0.35 0.65 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 1.15 7.83 -51.93 -0.41 0.74 16 33 H 0.08 1.18 7.99 -51.93 -0.42 0.76 16 34 H 0.39 9.48 7.73 -40.82 -0.32 9.16 16 35 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.07 1.05 7.48 -51.93 -0.39 0.66 16 38 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.09 0.94 7.85 -51.93 -0.41 0.53 16 40 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 41 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.13 0.26 8.14 -51.92 -0.42 -0.16 16 47 H 0.14 0.31 8.14 -51.92 -0.42 -0.11 16 48 H 0.42 1.01 8.96 -34.46 -0.31 0.70 16 49 H 0.41 0.11 8.96 -34.47 -0.31 -0.20 16 LS Contribution 409.99 15.07 6.18 6.18 Total: -1.00 -36.46 409.99 -10.27 -46.73 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -8.36 Total: 6.50 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -0.94 Total: -4.34 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: 0.52 Total: -55.26 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: -2.00 Total: -31.61 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 16.36 SS G_CDS: -0.64 Total: 15.71 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -36.46 -10.27 -46.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284028389.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.046 kcal (2) G-P(sol) polarization free energy of solvation -36.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds