Wall clock time and date at job start Wed Apr 1 2020 05:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09007 * 109.86812 * 2 1 4 4 C 1.54325 * 109.88042 * 121.01201 * 2 1 3 5 5 C 1.55155 * 102.94032 * 97.38192 * 4 2 1 6 6 H 1.08991 * 111.00672 * 277.39134 * 5 4 2 7 7 N 1.46505 * 111.00247 * 153.57428 * 5 4 2 8 8 C 1.36931 * 119.99788 * 158.18134 * 7 5 4 9 9 H 1.08002 * 120.00438 * 0.02562 * 8 7 5 10 10 C 1.38817 * 119.99680 * 179.72358 * 8 7 5 11 11 N 1.31614 * 119.99888 * 0.27479 * 10 8 7 12 12 Si 1.86803 * 119.99862 * 180.27671 * 10 8 7 13 13 H 1.48496 * 109.47141 * 59.99751 * 12 10 8 14 14 H 1.48490 * 109.47071 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.46993 * 300.00028 * 12 10 8 16 16 C 1.54914 * 101.61562 * 35.48447 * 5 4 2 17 17 N 1.47019 * 110.01375 * 238.90208 * 2 1 3 18 18 C 1.34777 * 125.65068 * 59.48238 * 17 2 1 19 19 O 1.21282 * 119.99807 * 359.97438 * 18 17 2 20 20 C 1.50699 * 119.99863 * 179.97438 * 18 17 2 21 21 C 1.53001 * 109.46920 * 180.02562 * 20 18 17 22 22 C 1.53000 * 109.47255 * 180.02562 * 21 20 18 23 23 C 1.53001 * 109.47255 * 179.97438 * 22 21 20 24 24 C 1.52992 * 109.47151 * 180.02562 * 23 22 21 25 25 S 1.81404 * 109.47383 * 180.02562 * 24 23 22 26 26 N 1.65596 * 104.44830 * 179.97438 * 25 24 23 27 27 O 1.42100 * 110.53871 * 291.62463 * 25 24 23 28 28 O 1.42099 * 110.53941 * 68.37104 * 25 24 23 29 29 H 1.08994 * 109.47493 * 298.98428 * 1 2 3 30 30 H 1.09002 * 109.47000 * 58.99201 * 1 2 3 31 31 H 1.09005 * 109.46509 * 178.98474 * 1 2 3 32 32 H 1.09000 * 110.71993 * 339.01870 * 4 2 1 33 33 H 1.09006 * 110.87089 * 215.81501 * 4 2 1 34 34 H 0.97000 * 119.99792 * 338.17928 * 7 5 4 35 35 H 0.97005 * 119.99715 * 179.97438 * 11 10 8 36 36 H 1.08998 * 110.36983 * 81.84862 * 16 5 4 37 37 H 1.09000 * 110.36647 * 204.17116 * 16 5 4 38 38 H 1.08998 * 109.47231 * 300.00063 * 20 18 17 39 39 H 1.09004 * 109.46706 * 60.00459 * 20 18 17 40 40 H 1.09003 * 109.47494 * 300.00413 * 21 20 18 41 41 H 1.09000 * 109.46862 * 60.00179 * 21 20 18 42 42 H 1.08998 * 109.46983 * 300.00065 * 22 21 20 43 43 H 1.09004 * 109.46620 * 60.00256 * 22 21 20 44 44 H 1.09004 * 109.46779 * 300.00112 * 23 22 21 45 45 H 1.09000 * 109.46862 * 60.00081 * 23 22 21 46 46 H 1.09009 * 109.47339 * 300.00117 * 24 23 22 47 47 H 1.09000 * 109.47347 * 60.00163 * 24 23 22 48 48 H 0.97003 * 119.99527 * 150.00553 * 26 25 24 49 49 H 0.97000 * 120.00492 * 329.99742 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 6 2.0548 -0.7477 1.2438 5 6 2.3557 -2.1673 0.6946 6 1 1.4506 -2.7736 0.6623 7 7 3.3980 -2.8263 1.4856 8 6 3.5046 -4.1914 1.4757 9 1 2.8207 -4.7823 0.8845 10 6 4.4958 -4.8156 2.2207 11 7 5.3296 -4.0955 2.9408 12 14 4.6462 -6.6774 2.2012 13 1 4.8968 -7.1392 0.8123 14 1 5.7748 -7.0920 3.0725 15 1 3.3859 -7.2811 2.7037 16 6 2.8616 -1.8481 -0.7344 17 7 2.0332 -0.7135 -1.1829 18 6 1.7795 -0.3852 -2.4652 19 8 1.0808 0.5731 -2.7189 20 6 2.3641 -1.2088 -3.5837 21 6 1.9258 -0.6262 -4.9288 22 6 2.5187 -1.4627 -6.0644 23 6 2.0799 -0.8805 -7.4096 24 6 2.6723 -1.7173 -8.5451 25 16 2.1527 -1.0266 -10.1400 26 7 2.8559 -2.0152 -11.2671 27 8 0.7571 -1.2118 -10.3326 28 8 2.7606 0.2393 -10.3568 29 1 -0.3634 0.4979 0.8989 30 1 -0.3633 0.5294 -0.8808 31 1 -0.3632 -1.0276 -0.0182 32 1 1.2908 -0.7885 2.0202 33 1 2.9636 -0.2804 1.6232 34 1 4.0125 -2.2956 2.0163 35 1 6.0220 -4.5317 3.4617 36 1 3.9134 -1.5631 -0.7097 37 1 2.7158 -2.7073 -1.3891 38 1 3.4519 -1.1912 -3.5176 39 1 2.0114 -2.2368 -3.5004 40 1 0.8379 -0.6433 -4.9952 41 1 2.2787 0.4018 -5.0118 42 1 3.6066 -1.4459 -5.9983 43 1 2.1654 -2.4905 -5.9812 44 1 0.9920 -0.8976 -7.4753 45 1 2.4329 0.1474 -7.4930 46 1 3.7603 -1.7006 -8.4795 47 1 2.3190 -2.7451 -8.4615 48 1 2.4270 -2.1532 -12.1262 49 1 3.6968 -2.4562 -11.0684 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284028389.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:53 Heat of formation + Delta-G solvation = -148.199538 kcal Electronic energy + Delta-G solvation = -28004.831679 eV Core-core repulsion = 23899.169342 eV Total energy + Delta-G solvation = -4105.662337 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.23763 -38.91469 -38.06900 -37.08069 -36.93088 -35.94291 -33.99440 -33.78243 -33.19476 -32.45552 -29.96849 -28.52902 -26.71910 -25.80386 -24.46061 -22.79118 -22.06320 -21.36718 -20.33196 -19.84713 -19.25720 -18.47685 -18.18381 -17.97169 -17.36451 -17.00881 -16.70942 -16.62430 -16.30052 -15.97745 -15.64055 -15.18929 -14.76771 -14.65541 -14.55124 -14.28644 -14.27721 -13.80069 -13.44133 -13.30011 -13.19787 -13.15681 -13.13135 -13.04957 -12.98971 -12.91720 -12.74290 -12.60434 -12.29681 -12.16728 -12.04344 -12.03869 -12.00146 -11.69419 -11.56444 -11.46524 -11.42419 -11.13691 -10.98637 -10.70613 -9.64390 -9.03276 -7.92469 -5.22465 -0.68119 1.52574 1.54139 1.60180 1.66612 2.00293 2.04482 2.59073 2.76780 3.38777 3.39620 3.42711 3.58722 3.85988 3.87885 3.90348 3.92685 3.98575 4.12724 4.15967 4.35842 4.38848 4.48020 4.50684 4.52631 4.55875 4.70553 4.73307 4.77234 4.86710 4.89961 4.93216 4.93515 5.04023 5.10992 5.16493 5.25981 5.30337 5.34477 5.35545 5.45315 5.49662 5.57060 6.28084 6.39914 6.60465 7.19936 7.35990 8.07519 8.31645 9.30082 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011536 B = 0.001858 C = 0.001644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.632836 B =15063.504574 C =17026.397809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.136 3.864 3 H 0.067 0.933 4 C -0.126 4.126 5 C 0.166 3.834 6 H 0.064 0.936 7 N -0.723 5.723 8 C -0.242 4.242 9 H 0.081 0.919 10 C -0.071 4.071 11 N -0.967 5.967 12 Si 0.970 3.030 13 H -0.275 1.275 14 H -0.301 1.301 15 H -0.280 1.280 16 C 0.088 3.912 17 N -0.612 5.612 18 C 0.519 3.481 19 O -0.583 6.583 20 C -0.132 4.132 21 C -0.105 4.105 22 C -0.106 4.106 23 C -0.128 4.128 24 C -0.600 4.600 25 S 2.622 3.378 26 N -1.240 6.240 27 O -1.009 7.009 28 O -1.011 7.011 29 H 0.081 0.919 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.376 0.624 35 H 0.251 0.749 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.164 0.836 47 H 0.164 0.836 48 H 0.424 0.576 49 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.225 2.653 -23.365 23.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.032 3.968 3 H 0.086 0.914 4 C -0.165 4.165 5 C 0.056 3.944 6 H 0.082 0.918 7 N -0.363 5.363 8 C -0.374 4.374 9 H 0.099 0.901 10 C -0.264 4.264 11 N -0.617 5.617 12 Si 0.799 3.201 13 H -0.201 1.201 14 H -0.227 1.227 15 H -0.206 1.206 16 C -0.038 4.038 17 N -0.345 5.345 18 C 0.310 3.690 19 O -0.464 6.464 20 C -0.172 4.172 21 C -0.143 4.143 22 C -0.145 4.145 23 C -0.167 4.167 24 C -0.733 4.733 25 S 2.717 3.283 26 N -0.916 5.916 27 O -0.999 6.999 28 O -1.000 7.000 29 H 0.100 0.900 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.109 0.891 33 H 0.090 0.910 34 H 0.209 0.791 35 H 0.059 0.941 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.124 0.876 39 H 0.126 0.874 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.096 0.904 45 H 0.096 0.904 46 H 0.182 0.818 47 H 0.182 0.818 48 H 0.255 0.745 49 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -5.280 3.874 -23.700 24.588 hybrid contribution 1.042 -1.274 0.631 1.762 sum -4.238 2.600 -23.069 23.599 Atomic orbital electron populations 1.22048 0.94115 1.02131 1.02675 1.21507 0.95062 0.95725 0.84456 0.91444 1.22904 1.01933 0.95239 0.96427 1.21429 0.91374 0.92293 0.89320 0.91793 1.42440 1.36180 1.03586 1.54052 1.19581 1.11291 0.84075 1.22418 0.90134 1.25527 0.98595 1.01948 1.00283 1.69800 1.21404 1.35723 1.34757 0.85271 0.76720 0.80637 0.77463 1.20058 1.22722 1.20633 1.23152 0.94344 0.87790 0.98503 1.48750 1.50051 1.30609 1.05114 1.21051 0.80070 0.84849 0.83042 1.90638 1.40899 1.30994 1.83853 1.21721 1.02983 1.00376 0.92114 1.21350 1.01084 0.99611 0.92251 1.21535 1.01960 0.99856 0.91128 1.21442 1.01671 0.99424 0.94130 1.30286 1.14163 1.13167 1.15642 1.04172 0.73110 0.73903 0.77092 1.52855 1.38067 1.69102 1.31599 1.93557 1.34102 1.86484 1.85722 1.93578 1.78283 1.43106 1.85029 0.90049 0.92948 0.92667 0.89105 0.90973 0.79098 0.94060 0.92129 0.90111 0.87590 0.87358 0.92215 0.92307 0.89828 0.89808 0.90429 0.90433 0.81763 0.81793 0.74524 0.74273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.92 9.06 71.98 0.65 -3.26 16 2 C 0.14 3.81 3.49 45.34 0.16 3.97 16 3 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 4 C -0.13 -3.71 6.13 31.78 0.19 -3.51 16 5 C 0.17 5.76 3.70 46.38 0.17 5.93 16 6 H 0.06 2.25 8.11 -2.39 -0.02 2.23 16 7 N -0.72 -32.61 5.26 -316.37 -1.66 -34.28 16 8 C -0.24 -12.15 9.97 84.04 0.84 -11.31 16 9 H 0.08 3.82 7.83 -2.91 -0.02 3.80 16 10 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 11 N -0.97 -55.64 13.06 21.65 0.28 -55.35 16 12 Si 0.97 42.96 29.55 68.60 2.03 44.99 16 13 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 14 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 15 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 16 C 0.09 2.66 6.39 86.85 0.55 3.21 16 17 N -0.61 -17.59 3.09 -787.92 -2.43 -20.02 16 18 C 0.52 14.79 7.63 87.66 0.67 15.46 16 19 O -0.58 -20.13 14.89 -3.04 -0.05 -20.17 16 20 C -0.13 -2.65 4.71 29.85 0.14 -2.51 16 21 C -0.10 -1.91 4.50 30.59 0.14 -1.77 16 22 C -0.11 -1.21 5.21 30.59 0.16 -1.05 16 23 C -0.13 -1.43 5.22 30.59 0.16 -1.27 16 24 C -0.60 -3.06 6.17 71.98 0.44 -2.62 16 25 S 2.62 30.83 5.97 -56.49 -0.34 30.49 16 26 N -1.24 -5.48 9.36 37.02 0.35 -5.13 16 27 O -1.01 -20.81 18.10 -127.65 -2.31 -23.12 16 28 O -1.01 -21.29 18.10 -127.65 -2.31 -23.60 16 29 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.05 1.52 6.77 -2.39 -0.02 1.50 16 31 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.09 2.46 7.83 -2.39 -0.02 2.44 16 33 H 0.07 2.19 7.99 -2.38 -0.02 2.17 16 34 H 0.38 18.49 7.73 -92.71 -0.72 17.77 16 35 H 0.25 14.16 8.31 -92.70 -0.77 13.39 16 36 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.08 2.26 7.48 -2.39 -0.02 2.24 16 38 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.11 1.86 7.85 -2.39 -0.02 1.84 16 40 H 0.06 1.23 8.10 -2.39 -0.02 1.21 16 41 H 0.06 1.22 8.10 -2.39 -0.02 1.20 16 42 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 45 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.16 -0.06 8.14 -2.39 -0.02 -0.08 16 47 H 0.16 0.06 8.14 -2.39 -0.02 0.04 16 48 H 0.42 1.53 8.96 -96.75 -0.87 0.67 16 49 H 0.43 -0.84 8.96 -96.74 -0.87 -1.70 16 Total: -1.00 -79.39 409.99 -3.18 -82.57 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: -1.49 Total: 25.66 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: 4.75 Total: -2.03 kcal Atomic # 7 Polarization: -111.32 SS G_CDS: -3.47 Total: -114.79 kcal Atomic # 8 Polarization: -62.22 SS G_CDS: -4.67 Total: -66.89 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 16 Polarization: 30.83 SS G_CDS: -0.34 Total: 30.49 kcal Total: -79.39 -3.18 -82.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284028389.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.630 kcal (2) G-P(sol) polarization free energy of solvation -79.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds