Wall clock time and date at job start Wed Apr 1 2020 05:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.47321 * 2 1 4 4 N 1.46507 * 109.46742 * 119.99684 * 2 1 3 5 5 S 1.65597 * 119.99869 * 264.99586 * 4 2 1 6 6 C 1.81404 * 104.44926 * 65.00541 * 5 4 2 7 7 O 1.42104 * 104.27338 * 181.07251 * 5 4 2 8 8 O 1.42095 * 104.28071 * 308.93320 * 5 4 2 9 9 C 1.50697 * 109.47452 * 239.99625 * 2 1 3 10 10 O 1.21286 * 120.00209 * 240.00403 * 9 2 1 11 11 N 1.34779 * 119.99870 * 59.99695 * 9 2 1 12 12 C 1.46499 * 119.99918 * 180.02562 * 11 9 2 13 13 H 1.08998 * 109.47266 * 35.00361 * 12 11 9 14 14 C 1.53007 * 109.46932 * 275.00205 * 12 11 9 15 15 C 1.53000 * 109.47091 * 155.00612 * 12 11 9 16 16 C 1.53036 * 109.45613 * 300.02607 * 15 12 11 17 17 C 1.53196 * 109.31232 * 178.60383 * 16 15 12 18 18 N 1.46925 * 108.76722 * 54.65219 * 17 16 15 19 19 C 1.36938 * 120.63150 * 126.40754 * 18 17 16 20 20 H 1.07995 * 119.99747 * 331.82969 * 19 18 17 21 21 C 1.38807 * 119.99757 * 151.83010 * 19 18 17 22 22 N 1.31620 * 120.00231 * 343.06664 * 21 19 18 23 23 Si 1.86804 * 119.99627 * 163.06983 * 21 19 18 24 24 H 1.48494 * 109.47217 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.46899 * 120.00017 * 23 21 19 26 26 H 1.48501 * 109.47285 * 239.99531 * 23 21 19 27 27 C 1.46934 * 118.73747 * 306.38653 * 18 17 16 28 28 C 1.53039 * 109.45985 * 179.97438 * 15 12 11 29 29 H 1.09005 * 109.47268 * 59.99950 * 1 2 3 30 30 H 1.08995 * 109.47559 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47296 * 300.00600 * 1 2 3 32 32 H 0.97002 * 120.00116 * 85.00386 * 4 2 1 33 33 H 1.09002 * 109.46801 * 59.99667 * 6 5 4 34 34 H 1.09000 * 109.46968 * 179.97438 * 6 5 4 35 35 H 1.09003 * 109.46972 * 299.99982 * 6 5 4 36 36 H 0.97002 * 119.99908 * 0.02562 * 11 9 2 37 37 H 1.09003 * 109.46824 * 60.00114 * 14 12 11 38 38 H 1.08998 * 109.47272 * 300.00152 * 14 12 11 39 39 H 1.09002 * 109.46973 * 179.97438 * 14 12 11 40 40 H 1.08996 * 109.46226 * 59.99654 * 15 12 11 41 41 H 1.08999 * 109.50187 * 298.56600 * 16 15 12 42 42 H 1.08997 * 109.50087 * 58.66153 * 16 15 12 43 43 H 1.09002 * 109.59565 * 294.86810 * 17 16 15 44 44 H 1.09000 * 109.70553 * 174.51018 * 17 16 15 45 45 H 0.97004 * 119.99730 * 180.02562 * 22 21 19 46 46 H 1.08999 * 109.58710 * 293.81870 * 27 18 17 47 47 H 1.09005 * 109.70034 * 173.46270 * 27 18 17 48 48 H 1.09002 * 109.49366 * 301.33303 * 28 15 12 49 49 H 1.08998 * 109.50131 * 61.42968 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6906 1.1963 5 16 2.4121 0.1773 2.5505 6 6 0.8406 0.8991 3.0985 7 8 2.8604 -0.8028 3.4766 8 8 3.2873 1.1907 2.0751 9 6 2.0323 -0.7105 -1.2304 10 8 2.7296 -1.6966 -1.1190 11 7 1.7067 -0.2501 -2.4545 12 6 2.1946 -0.9411 -3.6506 13 1 2.2309 -2.0138 -3.4611 14 6 3.5974 -0.4362 -3.9947 15 6 1.2506 -0.6617 -4.8218 16 6 -0.1525 -1.1661 -4.4771 17 6 -1.1026 -0.8535 -5.6375 18 7 -0.5438 -1.4213 -6.8720 19 6 -1.2919 -2.2588 -7.6557 20 1 -2.0677 -2.8645 -7.2113 21 6 -1.0528 -2.3291 -9.0212 22 7 -0.3628 -1.3806 -9.6184 23 14 -1.7106 -3.7701 -10.0115 24 1 -2.4473 -4.6937 -9.1119 25 1 -2.6282 -3.2684 -11.0658 26 1 -0.5786 -4.4939 -10.6440 27 6 0.8327 -1.0731 -7.2499 28 6 1.7609 -1.3831 -6.0713 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 2.1109 -1.6562 1.1951 33 1 0.1314 0.1011 3.3185 34 1 1.0076 1.4941 3.9964 35 1 0.4385 1.5354 2.3101 36 1 1.1493 0.5388 -2.5436 37 1 4.2700 -0.6352 -3.1603 38 1 3.5612 0.6366 -4.1842 39 1 3.9607 -0.9506 -4.8844 40 1 1.2145 0.4111 -5.0111 41 1 -0.1216 -2.2431 -4.3120 42 1 -0.5060 -0.6692 -3.5737 43 1 -1.2047 0.2264 -5.7455 44 1 -2.0797 -1.2951 -5.4416 45 1 -0.1962 -1.4296 -10.5727 46 1 0.8884 -0.0112 -7.4895 47 1 1.1352 -1.6597 -8.1174 48 1 2.7695 -1.0405 -6.3027 49 1 1.7737 -2.4580 -5.8911 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284700205.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:49 Heat of formation + Delta-G solvation = -95.403210 kcal Electronic energy + Delta-G solvation = -29643.897287 eV Core-core repulsion = 25540.524370 eV Total energy + Delta-G solvation = -4103.372917 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.31037 -38.18302 -37.49861 -36.35296 -35.99458 -35.29315 -32.99834 -31.55953 -30.37252 -29.93754 -29.65392 -28.90510 -25.54613 -24.78824 -22.93660 -22.05787 -20.81721 -20.49345 -19.98057 -19.20443 -18.46444 -17.45471 -16.83336 -16.64368 -16.33426 -15.96549 -15.45745 -15.00253 -14.75946 -14.29093 -14.15926 -14.07262 -13.70229 -13.62514 -13.51851 -13.35870 -13.20859 -12.96891 -12.77606 -12.49389 -12.43836 -12.39355 -12.34227 -12.20613 -12.08756 -11.84495 -11.48310 -11.38482 -11.15733 -11.01087 -10.74734 -10.45980 -10.33500 -10.22095 -10.18767 -9.96155 -9.79913 -9.57178 -9.44916 -9.03522 -8.49183 -6.68743 -5.81122 -3.23460 -0.19443 2.20179 2.44714 3.03246 3.35365 3.39120 3.43707 3.45616 3.74851 4.15198 4.28950 4.44237 4.47410 4.48011 4.58547 4.81737 4.92265 5.02665 5.18213 5.21082 5.30293 5.36275 5.45041 5.50089 5.61778 5.64382 5.69901 5.83800 5.92191 6.04418 6.13903 6.25641 6.29371 6.40524 6.47465 6.58138 6.58847 6.68429 6.73977 6.81544 6.95344 7.33605 7.41578 7.64051 7.77966 8.07141 8.43387 9.19692 9.83212 10.39626 11.27303 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026994 B = 0.002100 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.012258 B =13328.394486 C =13724.951024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.126 3.874 3 H 0.118 0.882 4 N -1.101 6.101 5 S 2.615 3.385 6 C -0.676 4.676 7 O -0.955 6.955 8 O -0.956 6.956 9 C 0.514 3.486 10 O -0.531 6.531 11 N -0.715 5.715 12 C 0.144 3.856 13 H 0.087 0.913 14 C -0.163 4.163 15 C -0.084 4.084 16 C -0.125 4.125 17 C 0.146 3.854 18 N -0.592 5.592 19 C -0.251 4.251 20 H 0.065 0.935 21 C 0.002 3.998 22 N -0.903 5.903 23 Si 0.901 3.099 24 H -0.278 1.278 25 H -0.291 1.291 26 H -0.289 1.289 27 C 0.172 3.828 28 C -0.134 4.134 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.427 0.573 33 H 0.132 0.868 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.400 0.600 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.057 0.943 42 H 0.047 0.953 43 H 0.015 0.985 44 H 0.051 0.949 45 H 0.253 0.747 46 H 0.017 0.983 47 H 0.087 0.913 48 H 0.054 0.946 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.806 7.409 22.797 24.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.014 3.986 3 H 0.135 0.865 4 N -0.861 5.861 5 S 2.707 3.293 6 C -0.826 4.826 7 O -0.945 6.945 8 O -0.945 6.945 9 C 0.297 3.703 10 O -0.406 6.406 11 N -0.366 5.366 12 C 0.040 3.960 13 H 0.105 0.895 14 C -0.221 4.221 15 C -0.103 4.103 16 C -0.164 4.164 17 C 0.019 3.981 18 N -0.315 5.315 19 C -0.381 4.381 20 H 0.082 0.918 21 C -0.197 4.197 22 N -0.547 5.547 23 Si 0.731 3.269 24 H -0.203 1.203 25 H -0.218 1.218 26 H -0.215 1.215 27 C 0.046 3.954 28 C -0.173 4.173 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.264 0.736 33 H 0.151 0.849 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.234 0.766 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.033 0.967 44 H 0.070 0.930 45 H 0.063 0.937 46 H 0.035 0.965 47 H 0.105 0.895 48 H 0.072 0.928 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.182 6.967 23.070 24.308 hybrid contribution -1.303 -0.533 -0.722 1.582 sum 1.879 6.435 22.348 23.332 Atomic orbital electron populations 1.22443 0.92829 1.04518 1.03785 1.20719 0.95383 0.97467 0.85036 0.86481 1.55400 1.83938 1.20941 1.25817 1.04733 0.76635 0.74564 0.73407 1.30670 1.24544 1.14308 1.13065 1.93636 1.79413 1.58758 1.62701 1.93630 1.60767 1.60851 1.79298 1.20360 0.80506 0.84903 0.84543 1.90713 1.37434 1.26108 1.86383 1.46106 1.53138 1.31925 1.05465 1.21211 0.93555 0.97600 0.83588 0.89534 1.22211 0.96463 1.01434 1.02042 1.21338 0.94566 1.00468 0.93919 1.22041 0.95318 1.00771 0.98307 1.20884 0.94766 0.95613 0.86812 1.44056 1.10144 1.54218 1.23096 1.19210 1.15596 1.14935 0.88328 0.91768 1.25039 1.00359 0.97803 0.96488 1.70037 1.44033 1.31301 1.09367 0.86249 0.78215 0.82422 0.80042 1.20287 1.21753 1.21545 1.20764 0.82629 0.97993 0.94037 1.22267 0.99169 0.99742 0.96167 0.90049 0.90585 0.91083 0.73603 0.84944 0.85162 0.85137 0.76560 0.92686 0.92561 0.90925 0.91424 0.92371 0.93429 0.96702 0.93004 0.93697 0.96499 0.89480 0.92758 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.80 9.38 37.15 0.35 -0.46 16 2 C 0.13 0.91 3.22 -69.08 -0.22 0.68 16 3 H 0.12 0.65 7.48 -51.93 -0.39 0.27 16 4 N -1.10 -8.44 5.15 -5.88 -0.03 -8.47 16 5 S 2.62 19.17 6.08 -107.50 -0.65 18.52 16 6 C -0.68 -1.92 10.04 101.05 1.01 -0.90 16 7 O -0.95 -10.58 18.08 -57.54 -1.04 -11.62 16 8 O -0.96 -10.49 17.39 -57.54 -1.00 -11.49 16 9 C 0.51 5.69 7.18 -10.99 -0.08 5.61 16 10 O -0.53 -8.01 15.65 5.55 0.09 -7.92 16 11 N -0.71 -7.27 4.25 -53.80 -0.23 -7.50 16 12 C 0.14 1.85 2.16 -67.93 -0.15 1.70 16 13 H 0.09 1.30 7.58 -51.93 -0.39 0.91 16 14 C -0.16 -2.01 9.13 37.16 0.34 -1.67 16 15 C -0.08 -1.21 1.79 -90.58 -0.16 -1.38 16 16 C -0.13 -1.92 5.22 -26.61 -0.14 -2.06 16 17 C 0.15 2.83 6.52 -3.71 -0.02 2.81 16 18 N -0.59 -14.22 2.99 -172.31 -0.52 -14.73 16 19 C -0.25 -6.73 9.58 -15.06 -0.14 -6.87 16 20 H 0.06 1.70 7.88 -52.49 -0.41 1.29 16 21 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 22 N -0.90 -25.71 11.19 55.49 0.62 -25.09 16 23 Si 0.90 21.41 29.59 -169.99 -5.03 16.38 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 C 0.17 3.89 5.30 -3.71 -0.02 3.87 16 28 C -0.13 -2.35 5.04 -26.61 -0.13 -2.48 16 29 H 0.08 0.30 7.57 -51.93 -0.39 -0.10 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.16 5.78 -51.93 -0.30 -0.14 16 32 H 0.43 3.54 8.17 -34.47 -0.28 3.26 16 33 H 0.13 0.21 8.14 -51.92 -0.42 -0.22 16 34 H 0.13 0.22 8.14 -51.92 -0.42 -0.20 16 35 H 0.13 0.17 6.77 -51.92 -0.35 -0.19 16 36 H 0.40 3.01 7.81 -40.82 -0.32 2.69 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.90 6.40 -51.93 -0.33 0.57 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.05 0.58 7.40 -51.93 -0.38 0.20 16 43 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.05 1.00 7.93 -51.93 -0.41 0.59 16 45 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 46 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.09 2.25 6.07 -51.93 -0.31 1.94 16 48 H 0.05 0.86 6.36 -51.93 -0.33 0.53 16 49 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 394.11 15.07 5.94 5.94 Total: -1.00 -36.92 394.11 -9.28 -46.21 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -7.98 Total: 0.98 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: 0.55 Total: -1.20 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: -0.15 Total: -55.80 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -1.95 Total: -31.03 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Atomic # 16 Polarization: 19.17 SS G_CDS: -0.65 Total: 18.52 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.92 -9.28 -46.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284700205.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.197 kcal (2) G-P(sol) polarization free energy of solvation -36.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds