Wall clock time and date at job start Wed Apr 1 2020 05:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.47321 * 2 1 4 4 N 1.46507 * 109.46742 * 119.99684 * 2 1 3 5 5 S 1.65597 * 119.99869 * 264.99586 * 4 2 1 6 6 C 1.81404 * 104.44926 * 65.00541 * 5 4 2 7 7 O 1.42104 * 104.27338 * 181.07251 * 5 4 2 8 8 O 1.42095 * 104.28071 * 308.93320 * 5 4 2 9 9 C 1.50697 * 109.47452 * 239.99625 * 2 1 3 10 10 O 1.21286 * 120.00209 * 240.00403 * 9 2 1 11 11 N 1.34779 * 119.99870 * 59.99695 * 9 2 1 12 12 C 1.46499 * 119.99918 * 180.02562 * 11 9 2 13 13 H 1.08998 * 109.47266 * 35.00361 * 12 11 9 14 14 C 1.53007 * 109.46932 * 275.00205 * 12 11 9 15 15 C 1.53000 * 109.47091 * 155.00612 * 12 11 9 16 16 C 1.53036 * 109.45613 * 300.02607 * 15 12 11 17 17 C 1.53196 * 109.31232 * 178.60383 * 16 15 12 18 18 N 1.46925 * 108.76722 * 54.65219 * 17 16 15 19 19 C 1.36938 * 120.63150 * 126.40754 * 18 17 16 20 20 H 1.07995 * 119.99747 * 331.82969 * 19 18 17 21 21 C 1.38807 * 119.99757 * 151.83010 * 19 18 17 22 22 N 1.31620 * 120.00231 * 343.06664 * 21 19 18 23 23 Si 1.86804 * 119.99627 * 163.06983 * 21 19 18 24 24 H 1.48494 * 109.47217 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.46899 * 120.00017 * 23 21 19 26 26 H 1.48501 * 109.47285 * 239.99531 * 23 21 19 27 27 C 1.46934 * 118.73747 * 306.38653 * 18 17 16 28 28 C 1.53039 * 109.45985 * 179.97438 * 15 12 11 29 29 H 1.09005 * 109.47268 * 59.99950 * 1 2 3 30 30 H 1.08995 * 109.47559 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47296 * 300.00600 * 1 2 3 32 32 H 0.97002 * 120.00116 * 85.00386 * 4 2 1 33 33 H 1.09002 * 109.46801 * 59.99667 * 6 5 4 34 34 H 1.09000 * 109.46968 * 179.97438 * 6 5 4 35 35 H 1.09003 * 109.46972 * 299.99982 * 6 5 4 36 36 H 0.97002 * 119.99908 * 0.02562 * 11 9 2 37 37 H 1.09003 * 109.46824 * 60.00114 * 14 12 11 38 38 H 1.08998 * 109.47272 * 300.00152 * 14 12 11 39 39 H 1.09002 * 109.46973 * 179.97438 * 14 12 11 40 40 H 1.08996 * 109.46226 * 59.99654 * 15 12 11 41 41 H 1.08999 * 109.50187 * 298.56600 * 16 15 12 42 42 H 1.08997 * 109.50087 * 58.66153 * 16 15 12 43 43 H 1.09002 * 109.59565 * 294.86810 * 17 16 15 44 44 H 1.09000 * 109.70553 * 174.51018 * 17 16 15 45 45 H 0.97004 * 119.99730 * 180.02562 * 22 21 19 46 46 H 1.08999 * 109.58710 * 293.81870 * 27 18 17 47 47 H 1.09005 * 109.70034 * 173.46270 * 27 18 17 48 48 H 1.09002 * 109.49366 * 301.33303 * 28 15 12 49 49 H 1.08998 * 109.50131 * 61.42968 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6906 1.1963 5 16 2.4121 0.1773 2.5505 6 6 0.8406 0.8991 3.0985 7 8 2.8604 -0.8028 3.4766 8 8 3.2873 1.1907 2.0751 9 6 2.0323 -0.7105 -1.2304 10 8 2.7296 -1.6966 -1.1190 11 7 1.7067 -0.2501 -2.4545 12 6 2.1946 -0.9411 -3.6506 13 1 2.2309 -2.0138 -3.4611 14 6 3.5974 -0.4362 -3.9947 15 6 1.2506 -0.6617 -4.8218 16 6 -0.1525 -1.1661 -4.4771 17 6 -1.1026 -0.8535 -5.6375 18 7 -0.5438 -1.4213 -6.8720 19 6 -1.2919 -2.2588 -7.6557 20 1 -2.0677 -2.8645 -7.2113 21 6 -1.0528 -2.3291 -9.0212 22 7 -0.3628 -1.3806 -9.6184 23 14 -1.7106 -3.7701 -10.0115 24 1 -2.4473 -4.6937 -9.1119 25 1 -2.6282 -3.2684 -11.0658 26 1 -0.5786 -4.4939 -10.6440 27 6 0.8327 -1.0731 -7.2499 28 6 1.7609 -1.3831 -6.0713 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 2.1109 -1.6562 1.1951 33 1 0.1314 0.1011 3.3185 34 1 1.0076 1.4941 3.9964 35 1 0.4385 1.5354 2.3101 36 1 1.1493 0.5388 -2.5436 37 1 4.2700 -0.6352 -3.1603 38 1 3.5612 0.6366 -4.1842 39 1 3.9607 -0.9506 -4.8844 40 1 1.2145 0.4111 -5.0111 41 1 -0.1216 -2.2431 -4.3120 42 1 -0.5060 -0.6692 -3.5737 43 1 -1.2047 0.2264 -5.7455 44 1 -2.0797 -1.2951 -5.4416 45 1 -0.1962 -1.4296 -10.5727 46 1 0.8884 -0.0112 -7.4895 47 1 1.1352 -1.6597 -8.1174 48 1 2.7695 -1.0405 -6.3027 49 1 1.7737 -2.4580 -5.8911 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284700205.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:48 Heat of formation + Delta-G solvation = -125.259268 kcal Electronic energy + Delta-G solvation = -29645.191943 eV Core-core repulsion = 25540.524370 eV Total energy + Delta-G solvation = -4104.667573 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.22275 -39.50444 -38.19235 -37.06301 -36.96627 -36.32433 -34.51516 -32.96258 -31.43081 -31.05401 -30.39592 -29.83837 -27.15441 -25.64673 -24.28531 -23.60045 -22.02311 -21.44113 -20.66203 -20.51150 -19.19826 -18.64408 -18.11214 -17.33656 -17.15513 -16.91196 -16.64347 -16.16150 -15.77965 -15.62154 -15.28739 -15.00383 -14.83988 -14.73536 -14.38837 -14.28245 -14.04687 -13.91828 -13.89926 -13.55629 -13.38513 -13.21734 -13.14054 -13.11859 -12.91623 -12.84165 -12.70903 -12.61812 -12.54891 -12.37962 -12.12611 -11.98111 -11.95664 -11.76320 -11.45537 -11.22941 -11.04854 -10.92865 -10.53554 -10.44352 -10.02807 -8.63866 -7.86020 -5.30284 -0.69308 1.44875 1.47802 1.57257 1.61549 1.66404 2.22562 2.51764 2.91324 3.27495 3.28319 3.54473 3.72298 3.78209 3.98256 3.99158 4.08208 4.11206 4.13162 4.20642 4.42900 4.44128 4.51533 4.59905 4.63618 4.77219 4.78872 4.83382 4.93564 5.01092 5.02832 5.06641 5.08967 5.16082 5.22562 5.32908 5.36166 5.40878 5.47952 5.55099 5.59807 5.68571 5.83380 5.96241 6.41905 6.60347 7.17935 7.26733 7.91095 8.40799 9.19849 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026994 B = 0.002100 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.012258 B =13328.394486 C =13724.951024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.127 3.873 3 H 0.137 0.863 4 N -1.107 6.107 5 S 2.614 3.386 6 C -0.647 4.647 7 O -1.003 7.003 8 O -1.001 7.001 9 C 0.508 3.492 10 O -0.578 6.578 11 N -0.704 5.704 12 C 0.156 3.844 13 H 0.063 0.937 14 C -0.159 4.159 15 C -0.072 4.072 16 C -0.112 4.112 17 C 0.141 3.859 18 N -0.613 5.613 19 C -0.258 4.258 20 H 0.063 0.937 21 C -0.051 4.051 22 N -0.933 5.933 23 Si 0.961 3.039 24 H -0.268 1.268 25 H -0.291 1.291 26 H -0.292 1.292 27 C 0.178 3.822 28 C -0.122 4.122 29 H 0.096 0.904 30 H 0.066 0.934 31 H 0.102 0.898 32 H 0.422 0.578 33 H 0.155 0.845 34 H 0.150 0.850 35 H 0.158 0.842 36 H 0.417 0.583 37 H 0.044 0.956 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.041 0.959 42 H 0.089 0.911 43 H 0.021 0.979 44 H 0.049 0.951 45 H 0.249 0.751 46 H 0.001 0.999 47 H 0.048 0.952 48 H 0.072 0.928 49 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.044 8.968 24.991 26.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.016 3.984 3 H 0.155 0.845 4 N -0.866 5.866 5 S 2.711 3.289 6 C -0.802 4.802 7 O -0.994 6.994 8 O -0.991 6.991 9 C 0.293 3.707 10 O -0.457 6.457 11 N -0.357 5.357 12 C 0.051 3.949 13 H 0.081 0.919 14 C -0.218 4.218 15 C -0.091 4.091 16 C -0.151 4.151 17 C 0.015 3.985 18 N -0.337 5.337 19 C -0.389 4.389 20 H 0.081 0.919 21 C -0.247 4.247 22 N -0.580 5.580 23 Si 0.790 3.210 24 H -0.193 1.193 25 H -0.219 1.219 26 H -0.219 1.219 27 C 0.052 3.948 28 C -0.162 4.162 29 H 0.115 0.885 30 H 0.085 0.915 31 H 0.120 0.880 32 H 0.258 0.742 33 H 0.173 0.827 34 H 0.168 0.832 35 H 0.176 0.824 36 H 0.255 0.745 37 H 0.063 0.937 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.060 0.940 42 H 0.108 0.892 43 H 0.039 0.961 44 H 0.067 0.933 45 H 0.058 0.942 46 H 0.019 0.981 47 H 0.066 0.934 48 H 0.091 0.909 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.436 8.541 25.277 26.720 hybrid contribution -0.821 -0.968 -1.360 1.860 sum 0.615 7.572 23.917 25.095 Atomic orbital electron populations 1.22523 0.90125 1.04731 1.06147 1.20918 0.97338 0.97510 0.82649 0.84507 1.55362 1.84289 1.20619 1.26302 1.04516 0.78225 0.73509 0.72603 1.30422 1.19979 1.15185 1.14590 1.93571 1.81619 1.60464 1.63700 1.93567 1.64183 1.61475 1.79908 1.21134 0.79552 0.84375 0.85637 1.90699 1.39525 1.28356 1.87082 1.45932 1.53114 1.32130 1.04519 1.20825 0.93453 0.96676 0.83905 0.91905 1.22165 0.95775 1.02357 1.01457 1.21185 0.94306 1.00645 0.92988 1.21893 0.94780 1.00236 0.98147 1.21079 0.95607 0.95570 0.86202 1.44345 1.10659 1.54468 1.24180 1.19505 1.15356 1.15164 0.88869 0.91945 1.25738 1.01358 1.00030 0.97546 1.70174 1.45675 1.32926 1.09209 0.85297 0.77402 0.79737 0.78563 1.19292 1.21854 1.21882 1.20568 0.83358 0.96088 0.94807 1.22064 0.99008 0.99373 0.95741 0.88522 0.91477 0.87952 0.74249 0.82683 0.83209 0.82376 0.74537 0.93674 0.90972 0.91284 0.89988 0.94036 0.89220 0.96083 0.93263 0.94199 0.98124 0.93403 0.90908 0.93913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.83 9.38 71.98 0.67 -0.16 16 2 C 0.13 1.49 3.22 44.24 0.14 1.63 16 3 H 0.14 1.07 7.48 -2.39 -0.02 1.05 16 4 N -1.11 -15.52 5.15 -172.52 -0.89 -16.41 16 5 S 2.61 34.88 6.08 -56.49 -0.34 34.54 16 6 C -0.65 -0.66 10.04 113.37 1.14 0.48 16 7 O -1.00 -22.37 18.08 -127.65 -2.31 -24.68 16 8 O -1.00 -21.28 17.39 -127.65 -2.22 -23.50 16 9 C 0.51 10.41 7.18 87.66 0.63 11.04 16 10 O -0.58 -17.43 15.65 -3.05 -0.05 -17.48 16 11 N -0.70 -12.49 4.25 -442.52 -1.88 -14.37 16 12 C 0.16 3.76 2.16 44.99 0.10 3.85 16 13 H 0.06 1.86 7.58 -2.39 -0.02 1.85 16 14 C -0.16 -3.71 9.13 71.98 0.66 -3.05 16 15 C -0.07 -1.95 1.79 -10.77 -0.02 -1.97 16 16 C -0.11 -3.18 5.22 30.67 0.16 -3.02 16 17 C 0.14 5.28 6.52 86.36 0.56 5.84 16 18 N -0.61 -29.64 2.99 -699.07 -2.09 -31.73 16 19 C -0.26 -14.03 9.58 84.03 0.81 -13.23 16 20 H 0.06 3.33 7.88 -2.91 -0.02 3.31 16 21 C -0.05 -2.85 4.92 84.86 0.42 -2.44 16 22 N -0.93 -54.67 11.19 21.65 0.24 -54.42 16 23 Si 0.96 44.77 29.59 68.60 2.03 46.80 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 25 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 26 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 27 C 0.18 8.22 5.30 86.36 0.46 8.67 16 28 C -0.12 -4.27 5.04 30.67 0.15 -4.12 16 29 H 0.10 0.19 7.57 -2.38 -0.02 0.17 16 30 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.10 -0.15 5.78 -2.39 -0.01 -0.16 16 32 H 0.42 6.98 8.17 -96.74 -0.79 6.19 16 33 H 0.15 -0.35 8.14 -2.39 -0.02 -0.37 16 34 H 0.15 -0.22 8.14 -2.39 -0.02 -0.24 16 35 H 0.16 -0.58 6.77 -2.39 -0.02 -0.60 16 36 H 0.42 4.55 7.81 -92.71 -0.72 3.83 16 37 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.07 1.64 6.40 -2.39 -0.02 1.63 16 40 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.09 1.82 7.40 -2.39 -0.02 1.80 16 43 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.05 1.85 7.93 -2.39 -0.02 1.83 16 45 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 46 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 47 H 0.05 2.58 6.07 -2.38 -0.01 2.56 16 48 H 0.07 2.25 6.36 -2.39 -0.02 2.24 16 49 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -85.34 394.11 -2.18 -87.52 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -0.55 Total: 10.21 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: 5.88 Total: 3.54 kcal Atomic # 7 Polarization: -112.32 SS G_CDS: -4.62 Total: -116.94 kcal Atomic # 8 Polarization: -61.09 SS G_CDS: -4.58 Total: -65.66 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Atomic # 16 Polarization: 34.88 SS G_CDS: -0.34 Total: 34.54 kcal Total: -85.34 -2.18 -87.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284700205.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.742 kcal (2) G-P(sol) polarization free energy of solvation -85.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds