Wall clock time and date at job start Wed Apr 1 2020 04:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47011 * 2 1 4 4 N 1.46504 * 109.47052 * 119.99729 * 2 1 3 5 5 C 1.36946 * 119.99696 * 300.58292 * 4 2 1 6 6 H 1.07996 * 119.99786 * 36.00608 * 5 4 2 7 7 C 1.38806 * 119.99631 * 216.00331 * 5 4 2 8 8 N 1.31623 * 119.99898 * 214.46200 * 7 5 4 9 9 Si 1.86804 * 120.00177 * 34.46183 * 7 5 4 10 10 H 1.48506 * 109.46966 * 95.18673 * 9 7 5 11 11 H 1.48497 * 109.46998 * 215.18449 * 9 7 5 12 12 H 1.48492 * 109.47134 * 335.18676 * 9 7 5 13 13 C 1.46491 * 120.00182 * 120.58403 * 4 2 1 14 14 C 1.52998 * 109.47168 * 275.89210 * 13 4 2 15 15 C 1.53006 * 109.47199 * 179.97438 * 14 13 4 16 16 N 1.46496 * 109.46898 * 180.02562 * 15 14 13 17 17 C 1.34786 * 119.99827 * 180.02562 * 16 15 14 18 18 O 1.21275 * 119.99888 * 359.97438 * 17 16 15 19 19 C 1.50704 * 120.00010 * 180.02562 * 17 16 15 20 20 N 1.46491 * 109.47050 * 179.97438 * 19 17 16 21 21 C 1.47067 * 126.30197 * 84.99527 * 20 19 17 22 22 C 1.54069 * 110.05459 * 208.95999 * 21 20 19 23 23 C 1.55603 * 104.29631 * 314.83805 * 22 21 20 24 24 S 1.66856 * 126.22177 * 264.93325 * 20 19 17 25 25 O 1.42100 * 105.14271 * 61.13185 * 24 20 19 26 26 O 1.42097 * 105.27083 * 291.49438 * 24 20 19 27 27 H 1.08998 * 109.46841 * 306.31701 * 1 2 3 28 28 H 1.09003 * 109.46871 * 66.31986 * 1 2 3 29 29 H 1.09000 * 109.47079 * 186.31922 * 1 2 3 30 30 H 1.08992 * 109.47495 * 239.99567 * 2 1 3 31 31 H 1.09001 * 109.46691 * 182.79428 * 3 2 1 32 32 H 1.09001 * 109.47192 * 302.79020 * 3 2 1 33 33 H 1.08995 * 109.47179 * 62.79389 * 3 2 1 34 34 H 0.97005 * 119.99690 * 180.02562 * 8 7 5 35 35 H 1.08999 * 109.47247 * 155.89023 * 13 4 2 36 36 H 1.09001 * 109.47253 * 35.89242 * 13 4 2 37 37 H 1.08999 * 109.47189 * 59.99777 * 14 13 4 38 38 H 1.08997 * 109.47111 * 299.99657 * 14 13 4 39 39 H 1.08999 * 109.47185 * 59.99832 * 15 14 13 40 40 H 1.08997 * 109.46856 * 299.99871 * 15 14 13 41 41 H 0.96997 * 120.00815 * 359.97438 * 16 15 14 42 42 H 1.08996 * 109.46920 * 59.99559 * 19 17 16 43 43 H 1.08998 * 109.46446 * 299.99917 * 19 17 16 44 44 H 1.09006 * 109.35339 * 88.82155 * 21 20 19 45 45 H 1.08995 * 109.35483 * 329.10825 * 21 20 19 46 46 H 1.09003 * 110.46173 * 73.53579 * 22 21 20 47 47 H 1.08995 * 110.46880 * 196.12613 * 22 21 20 48 48 H 1.09002 * 111.16799 * 155.78125 * 23 22 21 49 49 H 1.09002 * 111.16387 * 280.04981 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.6777 -0.2296 2.4400 6 1 0.6972 0.1898 2.6104 7 6 2.5925 -0.3015 3.4814 8 7 2.1756 -0.5271 4.7093 9 14 4.4156 -0.0783 3.1402 10 1 4.7945 1.3373 3.3811 11 1 5.1994 -0.9607 4.0413 12 1 4.7019 -0.4338 1.7272 13 6 2.8711 -1.8741 1.0620 14 6 1.9961 -3.1128 0.8594 15 6 2.8868 -4.3489 0.7185 16 7 2.0490 -5.5348 0.5239 17 6 2.6203 -6.7465 0.3757 18 8 3.8278 -6.8550 0.4030 19 6 1.7584 -7.9664 0.1749 20 7 2.6112 -9.1499 0.0402 21 6 3.1605 -9.9571 1.1400 22 6 4.4942 -10.5975 0.7103 23 6 4.2121 -11.1528 -0.7156 24 16 3.1357 -9.8295 -1.3906 25 8 3.9028 -8.8148 -2.0242 26 8 1.9706 -10.3722 -1.9964 27 1 -0.3633 0.6086 0.8280 28 1 -0.3633 0.4128 -0.9412 29 1 -0.3633 -1.0214 0.1131 30 1 1.8934 -0.5138 -0.8899 31 1 3.1289 1.4429 -0.0501 32 1 1.6364 1.9706 -0.8639 33 1 1.7182 1.9417 0.9139 34 1 2.8149 -0.5770 5.4371 35 1 3.4691 -1.9955 1.9652 36 1 3.5310 -1.7510 0.2032 37 1 1.3981 -2.9914 -0.0438 38 1 1.3363 -3.2359 1.7181 39 1 3.4851 -4.4704 1.6215 40 1 3.5463 -4.2255 -0.1405 41 1 1.0831 -5.4481 0.5024 42 1 1.1612 -7.8445 -0.7286 43 1 1.0980 -8.0898 1.0332 44 1 2.4506 -10.7419 1.4015 45 1 3.3290 -9.3188 2.0073 46 1 5.2842 -9.8471 0.6777 47 1 4.7642 -11.4072 1.3883 48 1 5.1328 -11.2435 -1.2920 49 1 3.6834 -12.1049 -0.6697 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317688648.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:17 Heat of formation + Delta-G solvation = -104.207678 kcal Electronic energy + Delta-G solvation = -29163.118357 eV Core-core repulsion = 25059.363650 eV Total energy + Delta-G solvation = -4103.754707 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.72510 -38.75470 -38.11055 -37.99252 -36.95947 -36.29003 -34.32222 -34.14808 -33.38974 -31.06371 -28.96694 -27.77440 -27.10746 -26.32734 -24.80838 -23.02054 -22.64952 -21.66479 -21.15660 -19.93420 -18.46825 -18.42576 -18.26380 -17.64294 -17.09174 -16.84024 -16.77475 -16.56259 -16.18705 -15.79626 -15.41322 -15.39692 -14.99733 -14.87229 -14.75273 -14.24862 -14.11152 -14.04281 -13.95612 -13.79568 -13.38042 -13.29365 -13.20532 -13.04044 -12.91060 -12.74129 -12.65217 -12.56282 -12.41518 -12.33751 -12.06987 -12.03255 -11.99004 -11.63437 -11.45380 -11.39235 -11.23560 -11.19995 -10.50278 -10.06225 -9.95707 -8.69188 -8.21285 -5.40485 -0.77657 1.34059 1.43946 1.44817 1.51819 1.65452 2.24701 2.47968 2.62726 3.00175 3.01912 3.37598 3.42336 3.62168 3.83860 3.92244 4.06703 4.11264 4.21989 4.31301 4.32011 4.43756 4.47832 4.54441 4.58286 4.61380 4.70418 4.74069 4.82650 4.84627 4.90737 4.97653 5.00976 5.07047 5.11139 5.17392 5.21146 5.31437 5.42336 5.43541 5.51261 5.59593 5.66520 6.00260 6.29483 6.60889 7.08589 7.29437 7.76052 8.19230 8.99056 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017486 B = 0.002274 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.853941 B =12308.041162 C =13036.141311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.154 3.846 3 C -0.151 4.151 4 N -0.608 5.608 5 C -0.240 4.240 6 H 0.047 0.953 7 C -0.005 4.005 8 N -0.929 5.929 9 Si 0.895 3.105 10 H -0.302 1.302 11 H -0.304 1.304 12 H -0.245 1.245 13 C 0.149 3.851 14 C -0.126 4.126 15 C 0.129 3.871 16 N -0.718 5.718 17 C 0.475 3.525 18 O -0.569 6.569 19 C 0.139 3.861 20 N -0.981 5.981 21 C 0.073 3.927 22 C -0.126 4.126 23 C -0.558 4.558 24 S 2.550 3.450 25 O -1.004 7.004 26 O -0.993 6.993 27 H 0.031 0.969 28 H 0.070 0.930 29 H 0.046 0.954 30 H 0.074 0.926 31 H 0.034 0.966 32 H 0.072 0.928 33 H 0.036 0.964 34 H 0.259 0.741 35 H 0.030 0.970 36 H 0.051 0.949 37 H 0.079 0.921 38 H 0.057 0.943 39 H 0.044 0.956 40 H 0.057 0.943 41 H 0.416 0.584 42 H 0.122 0.878 43 H 0.150 0.850 44 H 0.111 0.889 45 H 0.088 0.912 46 H 0.079 0.921 47 H 0.147 0.853 48 H 0.158 0.842 49 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.378 -24.014 -10.487 26.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.049 3.951 3 C -0.210 4.210 4 N -0.330 5.330 5 C -0.369 4.369 6 H 0.065 0.935 7 C -0.202 4.202 8 N -0.572 5.572 9 Si 0.723 3.277 10 H -0.230 1.230 11 H -0.231 1.231 12 H -0.168 1.168 13 C 0.023 3.977 14 C -0.166 4.166 15 C 0.004 3.996 16 N -0.372 5.372 17 C 0.260 3.740 18 O -0.447 6.447 19 C 0.011 3.989 20 N -0.821 5.821 21 C -0.052 4.052 22 C -0.165 4.165 23 C -0.693 4.693 24 S 2.651 3.349 25 O -0.993 6.993 26 O -0.983 6.983 27 H 0.050 0.950 28 H 0.089 0.911 29 H 0.065 0.935 30 H 0.093 0.907 31 H 0.054 0.946 32 H 0.091 0.909 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.048 0.952 36 H 0.069 0.931 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.253 0.747 42 H 0.140 0.860 43 H 0.167 0.833 44 H 0.128 0.872 45 H 0.106 0.894 46 H 0.097 0.903 47 H 0.165 0.835 48 H 0.176 0.824 49 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 0.185 -23.716 -11.294 26.269 hybrid contribution 1.023 0.677 1.099 1.647 sum 1.208 -23.039 -10.195 25.223 Atomic orbital electron populations 1.22019 0.96576 1.00922 1.00619 1.20684 0.93759 0.92108 0.88521 1.22102 0.99808 0.98079 1.00982 1.44367 1.59369 1.27290 1.01985 1.18408 0.95930 1.37174 0.85423 0.93540 1.25842 1.00199 0.99476 0.94709 1.70156 1.35815 1.49769 1.01458 0.86558 0.85178 0.76798 0.79200 1.23029 1.23144 1.16826 1.21069 0.92111 0.86106 0.98447 1.22156 0.98886 0.93242 1.02348 1.21139 0.93713 0.84444 1.00269 1.45989 1.11386 1.06377 1.73475 1.22181 0.89776 0.86022 0.75983 1.90682 1.16573 1.86601 1.50847 1.21040 0.90592 0.79707 1.07558 1.56791 1.64421 1.37207 1.23660 1.22378 0.95392 0.95621 0.91815 1.22770 0.97216 1.02448 0.94074 1.30645 1.15501 1.15081 1.08048 1.06813 0.76353 0.77902 0.73811 1.93596 1.72969 1.57306 1.75449 1.93568 1.48702 1.80528 1.75516 0.94981 0.91108 0.93457 0.90749 0.94633 0.90933 0.94492 0.93166 0.95187 0.93093 0.90272 0.92429 0.93708 0.92420 0.74677 0.86019 0.83282 0.87151 0.89377 0.90253 0.83482 0.82354 0.80660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.65 9.03 71.98 0.65 -4.00 16 2 C 0.15 5.53 3.36 44.99 0.15 5.68 16 3 C -0.15 -5.29 9.21 71.98 0.66 -4.63 16 4 N -0.61 -26.54 2.02 -678.05 -1.37 -27.91 16 5 C -0.24 -12.75 8.50 84.03 0.71 -12.04 16 6 H 0.05 2.74 7.11 -2.91 -0.02 2.72 16 7 C 0.00 -0.26 4.98 84.86 0.42 0.16 16 8 N -0.93 -56.44 13.97 21.65 0.30 -56.14 16 9 Si 0.89 44.85 26.29 68.60 1.80 46.65 16 10 H -0.30 -15.44 7.11 99.48 0.71 -14.74 16 11 H -0.30 -15.54 7.11 99.48 0.71 -14.83 16 12 H -0.24 -11.40 5.95 99.48 0.59 -10.80 16 13 C 0.15 5.97 3.85 86.38 0.33 6.30 16 14 C -0.13 -4.13 5.65 30.60 0.17 -3.96 16 15 C 0.13 4.00 5.67 86.38 0.49 4.49 16 16 N -0.72 -17.66 5.56 -463.05 -2.57 -20.24 16 17 C 0.48 12.51 7.90 87.66 0.69 13.20 16 18 O -0.57 -20.16 16.43 -3.01 -0.05 -20.21 16 19 C 0.14 2.35 6.83 85.64 0.58 2.93 16 20 N -0.98 -16.89 2.80 -516.57 -1.45 -18.33 16 21 C 0.07 0.73 6.83 86.63 0.59 1.32 16 22 C -0.13 -0.93 6.79 31.85 0.22 -0.71 16 23 C -0.56 -3.95 7.51 72.88 0.55 -3.40 16 24 S 2.55 49.26 6.16 -56.49 -0.35 48.92 16 25 O -1.00 -30.55 18.13 -127.76 -2.32 -32.87 16 26 O -0.99 -24.03 18.14 -127.76 -2.32 -26.34 16 27 H 0.03 1.18 7.25 -2.39 -0.02 1.16 16 28 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.07 2.32 7.88 -2.39 -0.02 2.31 16 31 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.04 1.47 7.58 -2.39 -0.02 1.45 16 34 H 0.26 15.14 8.31 -92.70 -0.77 14.37 16 35 H 0.03 1.36 4.57 -2.39 -0.01 1.35 16 36 H 0.05 1.88 8.05 -2.39 -0.02 1.86 16 37 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.42 7.39 8.47 -92.71 -0.79 6.60 16 42 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.15 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.11 0.40 8.14 -2.38 -0.02 0.38 16 45 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.15 0.07 8.14 -2.39 -0.02 0.05 16 48 H 0.16 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.18 0.13 8.14 -2.39 -0.02 0.11 16 Total: -1.00 -87.14 405.28 -2.05 -89.18 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 0.03 Total: 11.93 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: 6.23 Total: 5.35 kcal Atomic # 7 Polarization: -117.53 SS G_CDS: -5.08 Total: -122.62 kcal Atomic # 8 Polarization: -74.73 SS G_CDS: -4.68 Total: -79.41 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.80 Total: 46.65 kcal Atomic # 16 Polarization: 49.26 SS G_CDS: -0.35 Total: 48.92 kcal Total: -87.14 -2.05 -89.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317688648.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.023 kcal (2) G-P(sol) polarization free energy of solvation -87.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds