Wall clock time and date at job start Wed Apr 1 2020 05:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47251 * 2 1 4 4 C 1.52993 * 109.47150 * 240.00308 * 2 1 3 5 5 S 1.81400 * 109.47280 * 179.97438 * 4 2 1 6 6 C 1.81408 * 101.92258 * 179.97438 * 5 4 2 7 7 O 1.42091 * 108.57806 * 294.48536 * 5 4 2 8 8 O 1.42099 * 108.57702 * 65.51572 * 5 4 2 9 9 N 1.46500 * 109.47532 * 120.00009 * 2 1 3 10 10 C 1.46499 * 119.99528 * 59.99832 * 9 2 1 11 11 C 1.34773 * 120.00024 * 240.00655 * 9 2 1 12 12 O 1.21584 * 120.00252 * 359.97438 * 11 9 2 13 13 N 1.34776 * 119.99879 * 180.02562 * 11 9 2 14 14 C 1.46499 * 120.00329 * 179.97438 * 13 11 9 15 15 C 1.53041 * 109.46101 * 275.02694 * 14 13 11 16 16 C 1.53189 * 109.31399 * 178.59541 * 15 14 13 17 17 N 1.46929 * 108.76324 * 54.65848 * 16 15 14 18 18 C 1.36933 * 120.63290 * 126.36070 * 17 16 15 19 19 H 1.07995 * 119.99921 * 331.85986 * 18 17 16 20 20 C 1.38816 * 120.00063 * 151.85625 * 18 17 16 21 21 N 1.31619 * 119.99952 * 343.07392 * 20 18 17 22 22 Si 1.86798 * 120.00027 * 163.06998 * 20 18 17 23 23 H 1.48503 * 109.46737 * 60.00385 * 22 20 18 24 24 H 1.48503 * 109.47056 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47294 * 300.00273 * 22 20 18 26 26 C 1.46932 * 118.73661 * 306.37895 * 17 16 15 27 27 C 1.53039 * 109.46309 * 154.96773 * 14 13 11 28 28 H 1.09005 * 109.46878 * 299.99993 * 1 2 3 29 29 H 1.08998 * 109.47573 * 60.00052 * 1 2 3 30 30 H 1.09003 * 109.47251 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47507 * 299.99816 * 4 2 1 32 32 H 1.09005 * 109.47228 * 59.99814 * 4 2 1 33 33 H 1.08998 * 109.46924 * 59.99648 * 6 5 4 34 34 H 1.08997 * 109.46992 * 179.97438 * 6 5 4 35 35 H 1.09004 * 109.46858 * 300.00400 * 6 5 4 36 36 H 1.08996 * 109.46990 * 90.00650 * 10 9 2 37 37 H 1.08998 * 109.47461 * 330.00298 * 10 9 2 38 38 H 1.09005 * 109.47226 * 210.00373 * 10 9 2 39 39 H 0.96999 * 119.99944 * 359.97438 * 13 11 9 40 40 H 1.09004 * 109.45569 * 34.99580 * 14 13 11 41 41 H 1.09003 * 109.49617 * 298.56389 * 15 14 13 42 42 H 1.09000 * 109.49684 * 58.65546 * 15 14 13 43 43 H 1.08993 * 109.60065 * 294.87043 * 16 15 14 44 44 H 1.08996 * 109.70569 * 174.50066 * 16 15 14 45 45 H 0.97000 * 120.00007 * 179.97438 * 21 20 18 46 46 H 1.08995 * 109.58839 * 293.82459 * 26 17 16 47 47 H 1.09003 * 109.70208 * 173.46702 * 26 17 16 48 48 H 1.08993 * 109.49855 * 301.34164 * 27 14 13 49 49 H 1.09007 * 109.49397 * 61.43723 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2492 5 16 3.8540 -0.7205 -1.2496 6 6 4.2287 -1.6087 -2.7864 7 8 4.3062 0.6203 -1.3793 8 8 4.3072 -1.5027 -0.1533 9 7 2.0184 -0.6906 1.1961 10 6 1.6645 -2.0932 1.4279 11 6 2.7932 -0.0356 2.0833 12 8 3.0872 1.1284 1.8907 13 7 3.2429 -0.6711 3.1834 14 6 4.0856 0.0407 4.1476 15 6 5.5455 -0.0220 3.6927 16 6 6.4189 0.7529 4.6844 17 7 6.1846 0.2232 6.0347 18 6 7.2315 -0.1981 6.8103 19 1 8.1302 -0.5755 6.3454 20 6 7.1375 -0.1400 8.1941 21 7 6.2143 0.6080 8.7602 22 14 8.3213 -1.1236 9.2526 23 1 9.7139 -0.6925 8.9692 24 1 8.0137 -0.8905 10.6867 25 1 8.1779 -2.5690 8.9436 26 6 4.8054 0.1539 6.5368 27 6 3.9501 -0.6140 5.5242 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6767 -1.7488 -1.2493 32 1 1.6766 -0.2073 -2.1392 33 1 3.8006 -1.0694 -3.6313 34 1 5.3092 -1.6795 -2.9108 35 1 3.8013 -2.6104 -2.7405 36 1 2.4158 -2.7376 0.9716 37 1 0.6905 -2.3002 0.9846 38 1 1.6238 -2.2853 2.5001 39 1 3.0087 -1.5998 3.3369 40 1 3.7684 1.0819 4.2078 41 1 5.8708 -1.0617 3.6562 42 1 5.6373 0.4233 2.7021 43 1 6.1549 1.8100 4.6556 44 1 7.4697 0.6314 4.4216 45 1 6.1484 0.6483 9.7271 46 1 4.4099 1.1621 6.6591 47 1 4.7892 -0.3639 7.4960 48 1 2.9063 -0.5901 5.8373 49 1 4.2906 -1.6481 5.4703 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318422183.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:48 Heat of formation + Delta-G solvation = -92.897007 kcal Electronic energy + Delta-G solvation = -30614.151702 eV Core-core repulsion = 26510.887462 eV Total energy + Delta-G solvation = -4103.264240 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.49434 -39.35201 -37.91956 -37.60744 -36.85598 -36.03269 -34.28548 -33.01818 -31.69926 -30.88912 -30.41246 -28.60137 -27.84991 -26.87371 -24.21254 -23.84629 -22.57782 -21.17537 -20.53892 -19.70185 -19.41949 -18.56163 -17.84684 -17.50293 -17.13276 -16.94640 -16.72736 -16.40332 -16.09621 -15.54439 -15.36147 -14.99422 -14.87630 -14.67737 -14.41539 -14.13899 -14.08531 -13.99794 -13.90582 -13.79789 -13.41223 -13.20475 -13.04617 -13.00411 -12.97508 -12.91891 -12.88293 -12.56046 -12.51151 -12.22679 -12.06154 -12.03101 -11.88878 -11.84072 -11.57238 -11.38541 -11.26981 -11.15799 -10.55193 -10.13150 -9.56621 -8.71665 -7.87557 -5.33772 -0.90223 1.48866 1.50908 1.58351 1.59187 1.94799 2.15164 2.52534 2.83230 2.97310 3.15806 3.28320 3.55371 3.64716 3.87879 3.92013 4.04950 4.06561 4.12748 4.24511 4.26764 4.32542 4.43960 4.47086 4.61648 4.62380 4.70694 4.80974 4.81994 4.83159 4.92269 4.93435 4.98025 5.04570 5.07019 5.13660 5.26438 5.30555 5.44907 5.53991 5.61923 5.63933 5.69317 5.91417 6.38665 6.97633 7.14051 7.57614 7.82450 8.37167 9.19763 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019611 B = 0.002739 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.412641 B =10222.057410 C =10882.361038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.151 3.849 3 H 0.079 0.921 4 C -0.604 4.604 5 S 2.382 3.618 6 C -0.637 4.637 7 O -0.999 6.999 8 O -0.971 6.971 9 N -0.633 5.633 10 C 0.060 3.940 11 C 0.700 3.300 12 O -0.637 6.637 13 N -0.723 5.723 14 C 0.179 3.821 15 C -0.123 4.123 16 C 0.147 3.853 17 N -0.608 5.608 18 C -0.268 4.268 19 H 0.065 0.935 20 C -0.048 4.048 21 N -0.935 5.935 22 Si 0.973 3.027 23 H -0.278 1.278 24 H -0.292 1.292 25 H -0.275 1.275 26 C 0.181 3.819 27 C -0.126 4.126 28 H 0.048 0.952 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.179 0.821 32 H 0.183 0.817 33 H 0.155 0.845 34 H 0.125 0.875 35 H 0.161 0.839 36 H 0.073 0.927 37 H 0.112 0.888 38 H 0.072 0.928 39 H 0.408 0.592 40 H 0.055 0.945 41 H 0.062 0.938 42 H 0.045 0.955 43 H 0.006 0.994 44 H 0.056 0.944 45 H 0.252 0.748 46 H -0.005 1.005 47 H 0.067 0.933 48 H 0.080 0.920 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.873 -11.806 -26.761 33.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.046 3.954 3 H 0.097 0.903 4 C -0.736 4.736 5 S 2.571 3.429 6 C -0.789 4.789 7 O -0.996 6.996 8 O -0.968 6.968 9 N -0.371 5.371 10 C -0.082 4.082 11 C 0.401 3.599 12 O -0.519 6.519 13 N -0.378 5.378 14 C 0.074 3.926 15 C -0.163 4.163 16 C 0.021 3.979 17 N -0.332 5.332 18 C -0.398 4.398 19 H 0.083 0.917 20 C -0.244 4.244 21 N -0.581 5.581 22 Si 0.800 3.200 23 H -0.204 1.204 24 H -0.218 1.218 25 H -0.200 1.200 26 C 0.055 3.945 27 C -0.165 4.165 28 H 0.067 0.933 29 H 0.112 0.888 30 H 0.109 0.891 31 H 0.197 0.803 32 H 0.200 0.800 33 H 0.173 0.827 34 H 0.144 0.856 35 H 0.179 0.821 36 H 0.091 0.909 37 H 0.130 0.870 38 H 0.091 0.909 39 H 0.246 0.754 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.064 0.936 43 H 0.024 0.976 44 H 0.074 0.926 45 H 0.061 0.939 46 H 0.013 0.987 47 H 0.085 0.915 48 H 0.098 0.902 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.063 -10.594 -26.085 32.414 hybrid contribution 0.440 -0.481 0.475 0.807 sum -15.623 -11.075 -25.610 31.978 Atomic orbital electron populations 1.22074 0.90499 1.04484 1.03346 1.20716 0.97757 0.96094 0.80855 0.90312 1.30622 1.22602 1.13414 1.06961 1.08456 0.80337 0.75385 0.78717 1.30120 1.12908 1.16167 1.19707 1.93557 1.80675 1.37727 1.87676 1.93556 1.80119 1.71683 1.51449 1.47249 1.52994 1.13892 1.22931 1.22141 1.03296 0.79537 1.03194 1.16161 0.78772 0.84268 0.80708 1.90909 1.65013 1.17897 1.78083 1.45217 1.54136 1.15955 1.22523 1.20507 0.88988 0.95562 0.87576 1.22161 0.95780 1.00715 0.97677 1.20928 0.97610 0.94161 0.85244 1.44335 1.02910 1.72911 1.13009 1.19493 0.96976 1.34878 0.88486 0.91682 1.25847 1.00551 0.99676 0.98296 1.70186 1.38081 1.40291 1.09509 0.85269 0.78605 0.78923 0.77175 1.20385 1.21775 1.20039 1.20565 0.82650 0.95648 0.95680 1.22257 1.00550 1.00237 0.93473 0.93311 0.88824 0.89082 0.80334 0.79971 0.82655 0.85624 0.82114 0.90872 0.86965 0.90943 0.75430 0.92691 0.91917 0.93595 0.97560 0.92582 0.93896 0.98694 0.91453 0.90178 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.17 71.98 0.66 -0.75 16 2 C 0.15 2.61 2.70 44.99 0.12 2.74 16 3 H 0.08 2.04 6.90 -2.39 -0.02 2.02 16 4 C -0.60 -4.67 5.18 71.98 0.37 -4.30 16 5 S 2.38 43.17 5.24 -56.49 -0.30 42.88 16 6 C -0.64 -3.64 10.62 113.37 1.20 -2.43 16 7 O -1.00 -30.75 18.10 -127.37 -2.30 -33.05 16 8 O -0.97 -25.62 15.65 -127.37 -1.99 -27.62 16 9 N -0.63 -14.10 1.58 -840.64 -1.33 -15.42 16 10 C 0.06 0.77 9.10 127.77 1.16 1.93 16 11 C 0.70 23.94 7.73 179.06 1.38 25.33 16 12 O -0.64 -28.24 15.33 -3.98 -0.06 -28.30 16 13 N -0.72 -23.62 4.94 -457.69 -2.26 -25.88 16 14 C 0.18 7.15 2.42 45.02 0.11 7.26 16 15 C -0.12 -5.32 5.65 30.67 0.17 -5.15 16 16 C 0.15 7.19 6.52 86.36 0.56 7.75 16 17 N -0.61 -32.99 2.99 -699.09 -2.09 -35.08 16 18 C -0.27 -15.51 9.58 84.03 0.81 -14.70 16 19 H 0.07 3.68 7.88 -2.91 -0.02 3.65 16 20 C -0.05 -2.77 4.92 84.86 0.42 -2.35 16 21 N -0.94 -56.61 11.19 21.65 0.24 -56.36 16 22 Si 0.97 45.80 29.59 68.60 2.03 47.83 16 23 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 24 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 25 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 26 C 0.18 9.16 5.30 86.36 0.46 9.62 16 27 C -0.13 -4.90 5.55 30.67 0.17 -4.73 16 28 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.09 0.37 6.66 -2.39 -0.02 0.35 16 31 H 0.18 -0.21 7.67 -2.39 -0.02 -0.22 16 32 H 0.18 -0.05 8.14 -2.39 -0.02 -0.07 16 33 H 0.16 0.02 8.14 -2.39 -0.02 0.00 16 34 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.16 -0.13 8.14 -2.39 -0.02 -0.15 16 36 H 0.07 0.89 7.37 -2.39 -0.02 0.88 16 37 H 0.11 0.52 6.43 -2.39 -0.02 0.51 16 38 H 0.07 0.92 6.36 -2.38 -0.02 0.90 16 39 H 0.41 10.50 6.33 -92.71 -0.59 9.91 16 40 H 0.05 2.50 7.58 -2.38 -0.02 2.48 16 41 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 42 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 44 H 0.06 2.67 7.93 -2.39 -0.02 2.65 16 45 H 0.25 14.69 8.31 -92.71 -0.77 13.91 16 46 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 47 H 0.07 3.73 6.06 -2.39 -0.01 3.71 16 48 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 49 H 0.07 2.61 8.14 -2.38 -0.02 2.59 16 Total: -1.00 -94.84 393.56 -0.11 -94.95 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: 0.36 Total: 15.86 kcal Atomic # 6 Polarization: 12.60 SS G_CDS: 7.60 Total: 20.20 kcal Atomic # 7 Polarization: -127.31 SS G_CDS: -5.44 Total: -132.74 kcal Atomic # 8 Polarization: -84.61 SS G_CDS: -4.36 Total: -88.97 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Atomic # 16 Polarization: 43.17 SS G_CDS: -0.30 Total: 42.88 kcal Total: -94.84 -0.11 -94.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318422183.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.048 kcal (2) G-P(sol) polarization free energy of solvation -94.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds