Wall clock time and date at job start Wed Apr 1 2020 05:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.46964 * 2 1 4 4 C 1.52999 * 109.47589 * 120.00288 * 2 1 3 5 5 S 1.81392 * 109.47295 * 184.99874 * 4 2 1 6 6 C 1.81404 * 101.92269 * 180.02562 * 5 4 2 7 7 O 1.42095 * 108.58230 * 294.48552 * 5 4 2 8 8 O 1.42100 * 108.57781 * 65.51467 * 5 4 2 9 9 N 1.46501 * 109.46898 * 240.00380 * 2 1 3 10 10 C 1.46504 * 120.00101 * 299.99761 * 9 2 1 11 11 C 1.34776 * 120.00072 * 119.99692 * 9 2 1 12 12 O 1.21588 * 119.99893 * 0.02562 * 11 9 2 13 13 N 1.34776 * 119.99942 * 179.97438 * 11 9 2 14 14 C 1.46507 * 119.99934 * 180.02562 * 13 11 9 15 15 C 1.53350 * 109.41582 * 275.13368 * 14 13 11 16 16 C 1.53194 * 109.14857 * 178.67461 * 15 14 13 17 17 N 1.46934 * 108.89214 * 54.57312 * 16 15 14 18 18 C 1.36935 * 120.62776 * 126.34278 * 17 16 15 19 19 H 1.08003 * 120.00334 * 331.82288 * 18 17 16 20 20 C 1.38816 * 120.00109 * 151.82327 * 18 17 16 21 21 N 1.31624 * 119.99356 * 343.07479 * 20 18 17 22 22 Si 1.86793 * 120.00395 * 163.07501 * 20 18 17 23 23 H 1.48500 * 109.47341 * 59.99642 * 22 20 18 24 24 H 1.48496 * 109.47062 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46651 * 299.99824 * 22 20 18 26 26 C 1.46917 * 118.73910 * 306.32295 * 17 16 15 27 27 C 1.53038 * 109.46172 * 155.00137 * 14 13 11 28 28 H 1.08997 * 109.47344 * 59.99448 * 1 2 3 29 29 H 1.08998 * 109.46964 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46999 * 299.99175 * 1 2 3 31 31 H 1.09000 * 109.46806 * 305.00304 * 4 2 1 32 32 H 1.09000 * 109.46720 * 64.99847 * 4 2 1 33 33 H 1.09003 * 109.46822 * 59.99849 * 6 5 4 34 34 H 1.08991 * 109.47290 * 179.97438 * 6 5 4 35 35 H 1.09005 * 109.46839 * 300.00067 * 6 5 4 36 36 H 1.08998 * 109.46885 * 270.00309 * 10 9 2 37 37 H 1.08999 * 109.46588 * 29.99605 * 10 9 2 38 38 H 1.08996 * 109.46960 * 150.00012 * 10 9 2 39 39 H 0.97000 * 120.00504 * 0.02562 * 13 11 9 40 40 H 1.09005 * 109.45906 * 35.03004 * 14 13 11 41 41 H 1.08992 * 109.69166 * 58.70714 * 15 14 13 42 42 H 1.09002 * 109.47268 * 298.50915 * 15 14 13 43 43 H 1.08993 * 109.58759 * 294.71698 * 16 15 14 44 44 H 1.09001 * 109.58865 * 174.43210 * 16 15 14 45 45 H 0.96997 * 119.99488 * 180.02562 * 21 20 18 46 46 H 1.09003 * 109.58812 * 173.39821 * 26 17 16 47 47 H 1.09004 * 109.58911 * 293.67958 * 26 17 16 48 48 H 1.09007 * 109.49142 * 61.43364 * 27 14 13 49 49 H 1.08995 * 109.49863 * 301.33893 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 16 3.8479 -0.5933 1.3255 6 6 4.2237 -1.4993 2.8515 7 8 4.3991 -1.3079 0.2280 8 8 4.1977 0.7715 1.5109 9 7 2.0183 -0.6905 -1.1962 10 6 1.6643 -2.0932 -1.4282 11 6 2.7930 -0.0355 -2.0834 12 8 3.0871 1.1284 -1.8907 13 7 3.2426 -0.6710 -3.1836 14 6 4.0853 0.0409 -4.1478 15 6 3.1958 0.8112 -5.1311 16 6 4.0831 1.5796 -6.1156 17 7 5.0141 0.6376 -6.7519 18 6 5.1011 0.5569 -8.1161 19 1 4.2446 0.8006 -8.7272 20 6 6.2901 0.1617 -8.7136 21 7 7.4121 0.1859 -8.0258 22 14 6.2980 -0.4044 -10.4937 23 1 5.8064 0.6935 -11.3645 24 1 7.6813 -0.7701 -10.8907 25 1 5.4121 -1.5872 -10.6408 26 6 5.8502 -0.2156 -5.8967 27 6 4.9459 -0.9662 -4.9141 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 1.6054 -0.2618 2.1369 32 1 1.7517 -1.7715 1.2054 33 1 3.8711 -2.5267 2.7602 34 1 5.3007 -1.4987 3.0185 35 1 3.7248 -1.0173 3.6924 36 1 2.4157 -2.7376 -0.9718 37 1 0.6904 -2.3001 -0.9847 38 1 1.6237 -2.2851 -2.5003 39 1 3.0084 -1.5996 -3.3372 40 1 4.7311 0.7414 -3.6180 41 1 2.5664 1.5133 -4.5845 42 1 2.5674 0.1092 -5.6793 43 1 4.6460 2.3441 -5.5802 44 1 3.4615 2.0498 -6.8775 45 1 8.2430 -0.0898 -8.4434 46 1 6.3929 -0.9317 -6.5138 47 1 6.5589 0.4023 -5.3452 48 1 4.3008 -1.6515 -5.4641 49 1 5.5601 -1.5289 -4.2113 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318422184.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:52 Heat of formation + Delta-G solvation = -94.327370 kcal Electronic energy + Delta-G solvation = -30436.339011 eV Core-core repulsion = 26333.012747 eV Total energy + Delta-G solvation = -4103.326265 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.48624 -39.33751 -37.93287 -37.61090 -36.88461 -36.02959 -34.28238 -33.01829 -31.70209 -30.88075 -30.42519 -28.60317 -27.85800 -26.86818 -24.21911 -23.83928 -22.58118 -21.17836 -20.53445 -19.72889 -19.42424 -18.55835 -17.82022 -17.53166 -17.13207 -16.94987 -16.71565 -16.41224 -16.11785 -15.56639 -15.36721 -14.98127 -14.85382 -14.76480 -14.30606 -14.16427 -14.07374 -14.01481 -13.91370 -13.76107 -13.43253 -13.21257 -13.06768 -13.00817 -12.99834 -12.93522 -12.90353 -12.55633 -12.50969 -12.23664 -12.07403 -12.03456 -11.88512 -11.84469 -11.56244 -11.38641 -11.28369 -11.15771 -10.55000 -10.13209 -9.56358 -8.71852 -7.86984 -5.33653 -0.91368 1.49051 1.51356 1.58592 1.59357 1.93441 2.15711 2.52794 2.82068 2.96645 3.14655 3.29059 3.54451 3.65082 3.87977 3.92359 4.03678 4.06593 4.11642 4.24125 4.26225 4.32779 4.44343 4.46416 4.61753 4.63956 4.69888 4.79544 4.81599 4.82906 4.91409 4.93238 4.97103 5.05281 5.06469 5.14541 5.26993 5.30649 5.44523 5.53779 5.61580 5.63910 5.68508 5.91311 6.38807 6.97947 7.13752 7.57962 7.82903 8.37679 9.20450 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020959 B = 0.002593 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.617571 B =10795.122828 C =11329.322412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.150 3.850 3 H 0.077 0.923 4 C -0.603 4.603 5 S 2.381 3.619 6 C -0.635 4.635 7 O -0.976 6.976 8 O -1.000 7.000 9 N -0.632 5.632 10 C 0.060 3.940 11 C 0.701 3.299 12 O -0.638 6.638 13 N -0.723 5.723 14 C 0.178 3.822 15 C -0.120 4.120 16 C 0.145 3.855 17 N -0.608 5.608 18 C -0.266 4.266 19 H 0.070 0.930 20 C -0.051 4.051 21 N -0.937 5.937 22 Si 0.974 3.026 23 H -0.276 1.276 24 H -0.294 1.294 25 H -0.274 1.274 26 C 0.181 3.819 27 C -0.126 4.126 28 H 0.048 0.952 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.185 0.815 32 H 0.179 0.821 33 H 0.161 0.839 34 H 0.126 0.874 35 H 0.157 0.843 36 H 0.072 0.928 37 H 0.113 0.887 38 H 0.072 0.928 39 H 0.408 0.592 40 H 0.045 0.955 41 H 0.057 0.943 42 H 0.070 0.930 43 H 0.003 0.997 44 H 0.061 0.939 45 H 0.251 0.749 46 H 0.066 0.934 47 H -0.010 1.010 48 H 0.074 0.926 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.057 -11.668 26.093 33.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.046 3.954 3 H 0.095 0.905 4 C -0.735 4.735 5 S 2.570 3.430 6 C -0.787 4.787 7 O -0.973 6.973 8 O -0.997 6.997 9 N -0.370 5.370 10 C -0.081 4.081 11 C 0.402 3.598 12 O -0.520 6.520 13 N -0.378 5.378 14 C 0.072 3.928 15 C -0.160 4.160 16 C 0.019 3.981 17 N -0.331 5.331 18 C -0.396 4.396 19 H 0.087 0.913 20 C -0.247 4.247 21 N -0.583 5.583 22 Si 0.801 3.199 23 H -0.202 1.202 24 H -0.221 1.221 25 H -0.200 1.200 26 C 0.055 3.945 27 C -0.166 4.166 28 H 0.067 0.933 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.203 0.797 32 H 0.196 0.804 33 H 0.179 0.821 34 H 0.144 0.856 35 H 0.175 0.825 36 H 0.090 0.910 37 H 0.131 0.869 38 H 0.091 0.909 39 H 0.246 0.754 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.021 0.979 44 H 0.079 0.921 45 H 0.060 0.940 46 H 0.084 0.916 47 H 0.008 0.992 48 H 0.093 0.907 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.073 -10.458 25.562 32.469 hybrid contribution 0.339 -0.450 -0.633 0.848 sum -16.734 -10.908 24.929 31.945 Atomic orbital electron populations 1.22074 0.90437 1.04523 1.03371 1.20711 0.97794 0.95995 0.80948 0.90458 1.30620 1.22389 1.13447 1.07080 1.08480 0.80399 0.75487 0.78628 1.30103 1.12948 1.16237 1.19448 1.93556 1.77319 1.74632 1.51813 1.93552 1.83181 1.35647 1.87325 1.47224 1.52922 1.13919 1.22904 1.22130 1.03341 0.79464 1.03204 1.16149 0.78841 0.84288 0.80530 1.90905 1.64725 1.17921 1.78469 1.45204 1.54467 1.15885 1.22284 1.20569 0.90837 0.93627 0.87764 1.22214 0.97877 0.99284 0.96651 1.20957 0.91573 0.91164 0.94417 1.44337 1.45241 1.41288 1.02269 1.19515 0.95310 1.41868 0.82893 0.91269 1.25891 0.94444 1.02318 1.02012 1.70204 0.98074 1.51658 1.38367 0.85252 0.76254 0.78624 0.79741 1.20216 1.22062 1.19966 1.20535 0.90784 0.92630 0.90588 1.22240 0.98717 0.97741 0.97907 0.93297 0.89018 0.88819 0.79718 0.80362 0.82116 0.85585 0.82482 0.90956 0.86907 0.90898 0.75414 0.93631 0.92465 0.91175 0.97949 0.92069 0.93994 0.91561 0.99197 0.90700 0.91163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.17 71.98 0.66 -0.76 16 2 C 0.15 2.62 2.64 44.99 0.12 2.74 16 3 H 0.08 2.02 6.90 -2.39 -0.02 2.00 16 4 C -0.60 -4.63 5.22 71.98 0.38 -4.25 16 5 S 2.38 43.40 5.28 -56.49 -0.30 43.10 16 6 C -0.63 -3.49 10.62 113.37 1.20 -2.28 16 7 O -0.98 -26.70 16.74 -127.37 -2.13 -28.83 16 8 O -1.00 -30.55 18.10 -127.37 -2.31 -32.86 16 9 N -0.63 -13.98 1.80 -840.62 -1.51 -15.49 16 10 C 0.06 0.74 9.17 127.77 1.17 1.91 16 11 C 0.70 23.94 7.73 179.05 1.38 25.32 16 12 O -0.64 -28.35 15.33 -3.99 -0.06 -28.41 16 13 N -0.72 -23.49 4.94 -457.17 -2.26 -25.75 16 14 C 0.18 7.09 2.42 45.12 0.11 7.20 16 15 C -0.12 -4.78 5.68 30.78 0.17 -4.60 16 16 C 0.15 6.81 6.50 86.36 0.56 7.37 16 17 N -0.61 -32.55 2.99 -699.10 -2.09 -34.64 16 18 C -0.27 -15.13 9.58 84.03 0.81 -14.32 16 19 H 0.07 3.80 7.89 -2.91 -0.02 3.77 16 20 C -0.05 -2.94 4.92 84.86 0.42 -2.53 16 21 N -0.94 -57.22 11.20 21.65 0.24 -56.98 16 22 Si 0.97 45.58 29.59 68.60 2.03 47.61 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 24 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 25 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 26 C 0.18 9.34 5.30 86.36 0.46 9.80 16 27 C -0.13 -5.09 5.55 30.67 0.17 -4.92 16 28 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.09 0.36 6.66 -2.39 -0.02 0.34 16 30 H 0.09 0.51 8.14 -2.38 -0.02 0.49 16 31 H 0.19 -0.14 8.14 -2.39 -0.02 -0.16 16 32 H 0.18 -0.18 7.51 -2.39 -0.02 -0.20 16 33 H 0.16 -0.15 8.14 -2.39 -0.02 -0.17 16 34 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.16 -0.05 8.14 -2.39 -0.02 -0.07 16 36 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.11 0.48 6.43 -2.39 -0.02 0.46 16 38 H 0.07 0.89 6.36 -2.39 -0.02 0.88 16 39 H 0.41 10.34 6.33 -92.71 -0.59 9.75 16 40 H 0.05 2.16 7.58 -2.38 -0.02 2.15 16 41 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 43 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 44 H 0.06 2.74 7.93 -2.39 -0.02 2.72 16 45 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 46 H 0.07 3.74 6.06 -2.39 -0.01 3.72 16 47 H -0.01 -0.57 8.14 -2.38 -0.02 -0.59 16 48 H 0.07 2.79 8.14 -2.38 -0.02 2.77 16 49 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -95.89 395.59 -0.42 -96.32 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 0.35 Total: 15.26 kcal Atomic # 6 Polarization: 13.07 SS G_CDS: 7.61 Total: 20.68 kcal Atomic # 7 Polarization: -127.24 SS G_CDS: -5.62 Total: -132.86 kcal Atomic # 8 Polarization: -85.60 SS G_CDS: -4.50 Total: -90.10 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Atomic # 16 Polarization: 43.40 SS G_CDS: -0.30 Total: 43.10 kcal Total: -95.89 -0.42 -96.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318422184.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.991 kcal (2) G-P(sol) polarization free energy of solvation -95.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds