Wall clock time and date at job start Wed Apr 1 2020 05:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 110.00505 * 2 1 4 4 C 1.54329 * 109.88459 * 238.90042 * 2 1 3 5 5 H 1.08996 * 110.71745 * 144.23929 * 4 2 1 6 6 N 1.46496 * 110.71617 * 21.13920 * 4 2 1 7 7 C 1.36939 * 119.99433 * 154.99908 * 6 4 2 8 8 H 1.07997 * 120.00620 * 359.97438 * 7 6 4 9 9 C 1.38815 * 120.00181 * 180.02562 * 7 6 4 10 10 N 1.31618 * 120.00535 * 180.02562 * 9 7 6 11 11 Si 1.86811 * 119.99575 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.46679 * 90.00247 * 11 9 7 13 13 H 1.48500 * 109.47128 * 209.99887 * 11 9 7 14 14 H 1.48500 * 109.47051 * 330.00321 * 11 9 7 15 15 C 1.55159 * 102.94332 * 262.77675 * 4 2 1 16 16 C 1.55133 * 101.48515 * 324.33297 * 15 4 2 17 17 N 1.47023 * 109.88113 * 121.09596 * 2 1 3 18 18 C 1.34777 * 125.64579 * 300.43644 * 17 2 1 19 19 O 1.21285 * 120.00215 * 0.02562 * 18 17 2 20 20 C 1.50698 * 120.00112 * 179.97438 * 18 17 2 21 21 S 1.81397 * 109.47506 * 180.02562 * 20 18 17 22 22 O 1.42101 * 110.54547 * 284.09630 * 21 20 18 23 23 O 1.42106 * 110.53962 * 60.84172 * 21 20 18 24 24 N 1.65594 * 104.45343 * 172.46679 * 21 20 18 25 25 C 1.46502 * 120.00345 * 67.24727 * 24 21 20 26 26 C 1.53005 * 109.46734 * 68.35899 * 25 24 21 27 27 C 1.52998 * 109.47581 * 188.35893 * 25 24 21 28 28 C 1.53000 * 109.46754 * 308.36134 * 25 24 21 29 29 H 1.09000 * 109.47750 * 300.36348 * 1 2 3 30 30 H 1.09003 * 109.46848 * 60.36082 * 1 2 3 31 31 H 1.09006 * 109.47231 * 180.35674 * 1 2 3 32 32 H 0.96994 * 120.00475 * 335.00581 * 6 4 2 33 33 H 0.97000 * 120.00035 * 180.02562 * 10 9 7 34 34 H 1.09004 * 111.00028 * 82.56863 * 15 4 2 35 35 H 1.08992 * 111.00638 * 206.38521 * 15 4 2 36 36 H 1.08992 * 110.49769 * 278.44960 * 16 15 4 37 37 H 1.09002 * 110.33947 * 156.05879 * 16 15 4 38 38 H 1.09003 * 109.47320 * 300.00160 * 20 18 17 39 39 H 1.09006 * 109.47380 * 60.00288 * 20 18 17 40 40 H 0.97009 * 120.00096 * 247.25314 * 24 21 20 41 41 H 1.08995 * 109.46952 * 50.29144 * 26 25 24 42 42 H 1.08998 * 109.46729 * 170.29633 * 26 25 24 43 43 H 1.09001 * 109.46917 * 290.29144 * 26 25 24 44 44 H 1.08996 * 109.46981 * 59.99731 * 27 25 24 45 45 H 1.08996 * 109.46865 * 180.02562 * 27 25 24 46 46 H 1.09007 * 109.46853 * 300.00193 * 27 25 24 47 47 H 1.09000 * 109.47166 * 72.32540 * 28 25 24 48 48 H 1.09000 * 109.46784 * 192.32314 * 28 25 24 49 49 H 1.09001 * 109.47281 * 312.32252 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7496 -1.2427 5 1 2.9639 -0.2814 -1.6200 6 7 1.0293 -0.8027 -2.2874 7 6 1.3954 -0.9389 -3.5999 8 1 2.4402 -1.0068 -3.8649 9 6 0.4238 -0.9887 -4.5900 10 7 0.7756 -1.1201 -5.8515 11 14 -1.3834 -0.8707 -4.1319 12 1 -1.8035 0.5537 -4.1382 13 1 -2.1945 -1.6303 -5.1169 14 1 -1.5887 -1.4414 -2.7764 15 6 2.3519 -2.1696 -0.6923 16 6 2.8612 -1.8465 0.7370 17 7 2.0299 -0.7141 1.1839 18 6 1.7753 -0.3844 2.4657 19 8 1.0784 0.5757 2.7180 20 6 2.3554 -1.2094 3.5855 21 16 1.8343 -0.5173 5.1792 22 8 2.5723 0.6601 5.4768 23 8 0.4182 -0.5431 5.2949 24 7 2.3557 -1.6201 6.2990 25 6 3.7905 -1.8167 6.5207 26 6 4.3817 -0.5655 7.1735 27 6 4.0044 -3.0209 7.4399 28 6 4.4838 -2.0687 5.1803 29 1 -0.3634 0.5194 0.8867 30 1 -0.3633 0.5082 -0.8932 31 1 -0.3634 -1.0277 0.0064 32 1 0.0909 -0.7413 -2.0496 33 1 0.0966 -1.1546 -6.5433 34 1 1.4451 -2.7737 -0.6602 35 1 3.1265 -2.6622 -1.2798 36 1 3.9122 -1.5589 0.7117 37 1 2.7177 -2.7048 1.3934 38 1 1.9998 -2.2364 3.5021 39 1 3.4435 -1.1953 3.5212 40 1 1.7112 -2.1362 6.8082 41 1 3.7780 -0.2865 8.0371 42 1 5.4026 -0.7713 7.4950 43 1 4.3856 0.2527 6.4533 44 1 3.5831 -3.9122 6.9750 45 1 5.0718 -3.1667 7.6052 46 1 3.5103 -2.8413 8.3949 47 1 4.5223 -1.1400 4.6109 48 1 5.4973 -2.4284 5.3575 49 1 3.9257 -2.8171 4.6176 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331938063.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:26 Heat of formation + Delta-G solvation = -103.313845 kcal Electronic energy + Delta-G solvation = -30281.399800 eV Core-core repulsion = 26177.683852 eV Total energy + Delta-G solvation = -4103.715948 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.52291 -39.20853 -39.09503 -38.01394 -37.03457 -36.13325 -33.88117 -32.51843 -32.01545 -31.88702 -30.45936 -28.15789 -27.99604 -26.97531 -25.12339 -24.01146 -21.79933 -21.30900 -20.40185 -20.06821 -19.89975 -18.96716 -17.95507 -17.72968 -17.62721 -17.08724 -16.60878 -16.33266 -16.05801 -15.85446 -15.59610 -15.13973 -14.86554 -14.78788 -14.62540 -14.15352 -14.09362 -13.92872 -13.71446 -13.51516 -13.30701 -13.22052 -13.18924 -13.14441 -13.00324 -12.95069 -12.84567 -12.66354 -12.52791 -12.35016 -12.34160 -12.16126 -12.00971 -11.92267 -11.75502 -11.60649 -11.53214 -11.25582 -10.99402 -10.54209 -9.86625 -9.33924 -8.03702 -5.37010 -0.91349 1.25399 1.35269 1.37439 1.43400 1.58042 1.85476 2.45391 2.75015 3.07502 3.18503 3.28010 3.51406 3.63052 3.73830 3.79034 3.84913 4.01587 4.06997 4.08057 4.11529 4.29151 4.33849 4.39967 4.44027 4.53959 4.71193 4.71782 4.77915 4.79631 4.91105 4.97179 5.01884 5.06959 5.07426 5.17135 5.19059 5.23605 5.35648 5.42376 5.46729 5.56050 5.76895 6.13401 6.20344 6.29431 6.74979 7.05476 7.80785 7.98199 9.17220 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.024529 B = 0.002574 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.246751 B =10875.640553 C =11435.040757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.125 3.875 3 H 0.074 0.926 4 C 0.169 3.831 5 H 0.075 0.925 6 N -0.746 5.746 7 C -0.225 4.225 8 H 0.068 0.932 9 C -0.057 4.057 10 N -0.979 5.979 11 Si 0.937 3.063 12 H -0.282 1.282 13 H -0.295 1.295 14 H -0.255 1.255 15 C -0.148 4.148 16 C 0.096 3.904 17 N -0.595 5.595 18 C 0.543 3.457 19 O -0.587 6.587 20 C -0.668 4.668 21 S 2.646 3.354 22 O -0.976 6.976 23 O -0.992 6.992 24 N -1.099 6.099 25 C 0.165 3.835 26 C -0.185 4.185 27 C -0.147 4.147 28 C -0.209 4.209 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.369 0.631 33 H 0.257 0.743 34 H 0.066 0.934 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.115 0.885 38 H 0.202 0.798 39 H 0.205 0.795 40 H 0.427 0.573 41 H 0.052 0.948 42 H 0.086 0.914 43 H 0.063 0.937 44 H 0.077 0.923 45 H 0.087 0.913 46 H 0.061 0.939 47 H 0.060 0.940 48 H 0.108 0.892 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.402 -9.073 29.440 32.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.021 3.979 3 H 0.092 0.908 4 C 0.060 3.940 5 H 0.093 0.907 6 N -0.391 5.391 7 C -0.356 4.356 8 H 0.086 0.914 9 C -0.249 4.249 10 N -0.629 5.629 11 Si 0.765 3.235 12 H -0.209 1.209 13 H -0.222 1.222 14 H -0.180 1.180 15 C -0.188 4.188 16 C -0.025 4.025 17 N -0.326 5.326 18 C 0.331 3.669 19 O -0.469 6.469 20 C -0.797 4.797 21 S 2.737 3.263 22 O -0.965 6.965 23 O -0.982 6.982 24 N -0.862 5.862 25 C 0.078 3.922 26 C -0.243 4.243 27 C -0.205 4.205 28 C -0.267 4.267 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.205 0.795 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.109 0.891 36 H 0.121 0.879 37 H 0.133 0.867 38 H 0.219 0.781 39 H 0.222 0.778 40 H 0.264 0.736 41 H 0.071 0.929 42 H 0.105 0.895 43 H 0.082 0.918 44 H 0.096 0.904 45 H 0.106 0.894 46 H 0.081 0.919 47 H 0.079 0.921 48 H 0.126 0.874 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 10.826 -7.679 29.516 32.364 hybrid contribution -1.470 -0.206 -0.735 1.656 sum 9.356 -7.886 28.781 31.274 Atomic orbital electron populations 1.22021 0.95767 1.02196 1.02051 1.21769 0.94566 0.96414 0.85195 0.90816 1.21386 0.91856 0.94805 0.85984 0.90696 1.42975 1.04637 1.88932 1.02579 1.19041 0.93675 1.40123 0.82729 0.91365 1.25341 1.01526 1.02960 0.95054 1.69841 1.33741 1.59283 1.00068 0.85696 0.81874 0.77885 0.78048 1.20871 1.22168 1.17954 1.23420 1.02114 0.98117 0.95175 1.22811 0.95460 0.88616 0.95603 1.48444 1.49452 1.31009 1.03740 1.19497 0.80057 0.84125 0.83187 1.90833 1.41214 1.31169 1.83726 1.31712 1.16723 1.14723 1.16545 1.03696 0.72664 0.74212 0.75760 1.93536 1.73748 1.46681 1.82566 1.93536 1.31729 1.86836 1.86099 1.55648 1.14873 1.61060 1.54613 1.20418 0.77691 0.96981 0.97150 1.22644 1.02085 0.97772 1.01827 1.22069 1.04014 0.95742 0.98704 1.23092 1.04705 1.02951 0.95926 0.92018 0.91900 0.92266 0.79495 0.93371 0.91569 0.89063 0.87893 0.86682 0.78065 0.77791 0.73618 0.92932 0.89529 0.91763 0.90389 0.89405 0.91950 0.92124 0.87356 0.88431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.56 7.93 71.98 0.57 -4.99 16 2 C 0.13 3.94 3.48 45.34 0.16 4.09 16 3 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 4 C 0.17 5.67 3.48 46.18 0.16 5.83 16 5 H 0.08 2.55 8.09 -2.39 -0.02 2.53 16 6 N -0.75 -32.51 4.74 -317.33 -1.51 -34.02 16 7 C -0.22 -12.03 10.44 84.03 0.88 -11.15 16 8 H 0.07 3.92 8.06 -2.91 -0.02 3.90 16 9 C -0.06 -3.25 5.50 84.86 0.47 -2.78 16 10 N -0.98 -60.98 13.97 21.65 0.30 -60.68 16 11 Si 0.94 44.80 27.74 68.60 1.90 46.70 16 12 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 13 H -0.29 -14.31 7.11 99.48 0.71 -13.61 16 14 H -0.25 -11.09 6.52 99.48 0.65 -10.44 16 15 C -0.15 -3.75 6.78 32.07 0.22 -3.53 16 16 C 0.10 1.60 6.70 86.93 0.58 2.19 16 17 N -0.59 -14.73 3.08 -787.62 -2.42 -17.15 16 18 C 0.54 14.34 7.65 87.66 0.67 15.01 16 19 O -0.59 -21.39 14.53 0.43 0.01 -21.38 16 20 C -0.67 -9.67 3.94 71.24 0.28 -9.39 16 21 S 2.65 56.59 4.39 -56.49 -0.25 56.34 16 22 O -0.98 -27.29 15.14 -127.65 -1.93 -29.22 16 23 O -0.99 -30.55 17.79 -124.36 -2.21 -32.76 16 24 N -1.10 -12.45 5.47 -152.21 -0.83 -13.29 16 25 C 0.16 1.29 1.14 3.60 0.00 1.29 16 26 C -0.18 -2.25 8.06 71.98 0.58 -1.67 16 27 C -0.15 -0.46 8.55 71.98 0.62 0.16 16 28 C -0.21 -0.78 6.74 71.98 0.49 -0.30 16 29 H 0.06 2.20 6.74 -2.39 -0.02 2.18 16 30 H 0.06 2.27 6.82 -2.39 -0.02 2.25 16 31 H 0.06 1.97 8.01 -2.38 -0.02 1.95 16 32 H 0.37 15.95 2.92 -92.71 -0.27 15.68 16 33 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 34 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.12 1.03 7.48 -2.39 -0.02 1.01 16 38 H 0.20 1.15 7.80 -2.39 -0.02 1.13 16 39 H 0.21 1.47 4.65 -2.39 -0.01 1.46 16 40 H 0.43 3.43 8.58 -96.74 -0.83 2.60 16 41 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.09 0.64 8.12 -2.39 -0.02 0.62 16 43 H 0.06 1.11 5.94 -2.39 -0.01 1.10 16 44 H 0.08 0.08 8.14 -2.39 -0.02 0.06 16 45 H 0.09 0.06 8.14 -2.39 -0.02 0.04 16 46 H 0.06 0.25 8.14 -2.38 -0.02 0.23 16 47 H 0.06 0.33 5.66 -2.39 -0.01 0.32 16 48 H 0.11 0.02 8.09 -2.39 -0.02 0.00 16 49 H 0.10 -0.06 7.11 -2.39 -0.02 -0.08 16 Total: -1.00 -86.07 385.47 -1.46 -87.54 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: -0.19 Total: 23.14 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: 5.67 Total: -5.23 kcal Atomic # 7 Polarization: -120.67 SS G_CDS: -4.46 Total: -125.13 kcal Atomic # 8 Polarization: -79.22 SS G_CDS: -4.14 Total: -83.36 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.90 Total: 46.70 kcal Atomic # 16 Polarization: 56.59 SS G_CDS: -0.25 Total: 56.34 kcal Total: -86.07 -1.46 -87.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331938063.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.778 kcal (2) G-P(sol) polarization free energy of solvation -86.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds