Wall clock time and date at job start Wed Apr 1 2020 05:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.00082 * 2 1 4 4 C 1.54327 * 109.88166 * 238.90397 * 2 1 3 5 5 H 1.08995 * 110.72133 * 336.93776 * 4 2 1 6 6 N 1.46510 * 110.71711 * 100.02696 * 4 2 1 7 7 C 1.36935 * 119.99677 * 202.56129 * 6 4 2 8 8 H 1.07997 * 120.00382 * 0.02562 * 7 6 4 9 9 C 1.38816 * 119.99853 * 180.02562 * 7 6 4 10 10 N 1.31621 * 119.99652 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00333 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46836 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47166 * 119.99620 * 11 9 7 14 14 H 1.48500 * 109.47368 * 240.00227 * 11 9 7 15 15 C 1.55146 * 103.10570 * 218.48006 * 4 2 1 16 16 C 1.54916 * 101.58052 * 35.41459 * 15 4 2 17 17 N 1.47320 * 110.06405 * 121.17808 * 2 1 3 18 18 C 1.34778 * 125.61280 * 298.24229 * 17 2 1 19 19 O 1.21281 * 120.00030 * 359.83876 * 18 17 2 20 20 C 1.50700 * 120.00072 * 179.84018 * 18 17 2 21 21 S 1.81391 * 109.47230 * 180.02562 * 20 18 17 22 22 O 1.42102 * 110.54478 * 283.36437 * 21 20 18 23 23 O 1.42100 * 110.54523 * 60.11430 * 21 20 18 24 24 N 1.65600 * 104.45091 * 171.74032 * 21 20 18 25 25 C 1.46500 * 119.99648 * 60.16196 * 24 21 20 26 26 C 1.52996 * 109.47298 * 37.71755 * 25 24 21 27 27 C 1.53001 * 109.47034 * 157.71874 * 25 24 21 28 28 C 1.53004 * 109.47119 * 277.71711 * 25 24 21 29 29 H 1.09000 * 109.47491 * 181.09186 * 1 2 3 30 30 H 1.09001 * 109.46891 * 301.09804 * 1 2 3 31 31 H 1.08998 * 109.46930 * 61.09027 * 1 2 3 32 32 H 0.96995 * 120.00024 * 22.83639 * 6 4 2 33 33 H 0.97004 * 119.99990 * 180.02562 * 10 9 7 34 34 H 1.09000 * 111.00853 * 153.48730 * 15 4 2 35 35 H 1.08995 * 111.00705 * 277.30428 * 15 4 2 36 36 H 1.08996 * 110.36379 * 81.83181 * 16 15 4 37 37 H 1.09000 * 110.36549 * 204.14765 * 16 15 4 38 38 H 1.09001 * 109.46713 * 300.00130 * 20 18 17 39 39 H 1.08993 * 109.47137 * 59.99401 * 20 18 17 40 40 H 0.96998 * 120.00295 * 240.15968 * 24 21 20 41 41 H 1.08999 * 109.46896 * 60.00268 * 26 25 24 42 42 H 1.09003 * 109.46800 * 179.97438 * 26 25 24 43 43 H 1.08995 * 109.47136 * 299.99929 * 26 25 24 44 44 H 1.09007 * 109.47156 * 59.99869 * 27 25 24 45 45 H 1.09002 * 109.47116 * 179.97438 * 27 25 24 46 46 H 1.08999 * 109.47401 * 299.99879 * 27 25 24 47 47 H 1.08995 * 109.46988 * 55.99522 * 28 25 24 48 48 H 1.08996 * 109.47108 * 176.00296 * 28 25 24 49 49 H 1.09003 * 109.46967 * 296.00316 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7495 -1.2427 5 1 1.3039 -1.4436 -1.6202 6 7 2.4555 0.1962 -2.2876 7 6 2.5062 -0.2089 -3.5947 8 1 2.2506 -1.2252 -3.8554 9 6 2.8863 0.6870 -4.5846 10 7 3.1984 1.9255 -4.2667 11 14 2.9564 0.1345 -6.3676 12 1 2.5619 -1.2942 -6.4589 13 1 2.0232 0.9578 -7.1780 14 1 4.3389 0.3007 -6.8835 15 6 3.2868 -1.5178 -0.6959 16 6 2.8160 -1.8832 0.7340 17 7 2.0354 -0.7164 1.1839 18 6 1.8176 -0.3643 2.4665 19 8 1.1573 0.6206 2.7213 20 6 2.3947 -1.1943 3.5842 21 16 1.9284 -0.4680 5.1796 22 8 2.7203 0.6791 5.4558 23 8 0.5145 -0.4325 5.3172 24 7 2.4200 -1.5832 6.3008 25 6 3.8345 -1.9525 6.3951 26 6 4.7016 -0.7132 6.1646 27 6 4.1209 -2.5240 7.7852 28 6 4.1584 -3.0061 5.3339 29 1 -0.3634 -1.0275 0.0196 30 1 -0.3633 0.5308 0.8800 31 1 -0.3633 0.4968 -0.8996 32 1 2.6886 1.1080 -2.0529 33 1 3.4637 2.5517 -4.9584 34 1 3.4810 -2.4145 -1.2844 35 1 4.1664 -0.8748 -0.6658 36 1 2.1879 -2.7737 0.7105 37 1 3.6742 -2.0404 1.3873 38 1 2.0054 -2.2105 3.5203 39 1 3.4809 -1.2153 3.4976 40 1 1.7714 -1.9919 6.8951 41 1 4.4709 0.0373 6.9206 42 1 5.7541 -0.9880 6.2352 43 1 4.4977 -0.3062 5.1743 44 1 3.5031 -3.4069 7.9494 45 1 5.1732 -2.7991 7.8552 46 1 3.8901 -1.7734 8.5412 47 1 3.8878 -2.6251 4.3492 48 1 5.2251 -3.2289 5.3568 49 1 3.5929 -3.9149 5.5398 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331938079.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:31 Heat of formation + Delta-G solvation = -115.338835 kcal Electronic energy + Delta-G solvation = -30146.122291 eV Core-core repulsion = 26041.884901 eV Total energy + Delta-G solvation = -4104.237390 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.44168 -39.15625 -39.04350 -38.02171 -37.05231 -35.98634 -33.71044 -32.53965 -31.92560 -31.69460 -30.24429 -28.24535 -27.99856 -26.88824 -24.90235 -24.02979 -21.88945 -21.55609 -20.62295 -20.01465 -19.25914 -18.92085 -18.01907 -17.67637 -17.57183 -17.07162 -16.54892 -16.40189 -15.92669 -15.58464 -15.45876 -15.11159 -14.87432 -14.86206 -14.62804 -14.23704 -14.09666 -13.81449 -13.59629 -13.47071 -13.32130 -13.24256 -13.16515 -13.09670 -12.95824 -12.72536 -12.69114 -12.58718 -12.49168 -12.41724 -12.33934 -12.16464 -12.07122 -11.94786 -11.72989 -11.60836 -11.51956 -11.28494 -10.92806 -10.53111 -9.85410 -9.03990 -7.94563 -5.24780 -0.93976 1.24532 1.48994 1.50291 1.56633 1.60069 1.83129 2.56568 2.72420 3.07213 3.18321 3.38621 3.65811 3.69750 3.73478 3.83910 3.97081 3.98162 4.07454 4.10090 4.15859 4.32321 4.37961 4.40307 4.47753 4.61097 4.70069 4.72305 4.82838 4.89911 4.93111 4.97699 5.00783 5.07360 5.17454 5.20782 5.23475 5.27742 5.34769 5.44002 5.48212 5.49528 5.54892 6.12645 6.25033 6.30892 6.74683 7.32132 8.03881 8.27201 9.29188 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022129 B = 0.002458 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.989045 B =11386.910603 C =11900.155657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.126 3.874 3 H 0.048 0.952 4 C 0.170 3.830 5 H 0.075 0.925 6 N -0.730 5.730 7 C -0.233 4.233 8 H 0.086 0.914 9 C -0.077 4.077 10 N -0.972 5.972 11 Si 0.973 3.027 12 H -0.260 1.260 13 H -0.299 1.299 14 H -0.296 1.296 15 C -0.149 4.149 16 C 0.097 3.903 17 N -0.594 5.594 18 C 0.542 3.458 19 O -0.589 6.589 20 C -0.658 4.658 21 S 2.646 3.354 22 O -0.978 6.978 23 O -0.989 6.989 24 N -1.097 6.097 25 C 0.161 3.839 26 C -0.187 4.187 27 C -0.148 4.148 28 C -0.188 4.188 29 H 0.074 0.926 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.370 0.630 33 H 0.250 0.750 34 H 0.095 0.905 35 H 0.057 0.943 36 H 0.105 0.895 37 H 0.112 0.888 38 H 0.206 0.794 39 H 0.196 0.804 40 H 0.427 0.573 41 H 0.058 0.942 42 H 0.096 0.904 43 H 0.054 0.946 44 H 0.077 0.923 45 H 0.087 0.913 46 H 0.056 0.944 47 H 0.067 0.933 48 H 0.090 0.910 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.043 -18.651 23.994 30.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.022 3.978 3 H 0.066 0.934 4 C 0.061 3.939 5 H 0.093 0.907 6 N -0.369 5.369 7 C -0.365 4.365 8 H 0.104 0.896 9 C -0.270 4.270 10 N -0.623 5.623 11 Si 0.802 3.198 12 H -0.184 1.184 13 H -0.227 1.227 14 H -0.223 1.223 15 C -0.190 4.190 16 C -0.024 4.024 17 N -0.326 5.326 18 C 0.330 3.670 19 O -0.471 6.471 20 C -0.787 4.787 21 S 2.737 3.263 22 O -0.968 6.968 23 O -0.979 6.979 24 N -0.861 5.861 25 C 0.073 3.927 26 C -0.245 4.245 27 C -0.207 4.207 28 C -0.246 4.246 29 H 0.093 0.907 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.202 0.798 33 H 0.058 0.942 34 H 0.113 0.887 35 H 0.076 0.924 36 H 0.123 0.877 37 H 0.130 0.870 38 H 0.224 0.776 39 H 0.213 0.787 40 H 0.265 0.735 41 H 0.077 0.923 42 H 0.114 0.886 43 H 0.072 0.928 44 H 0.096 0.904 45 H 0.106 0.894 46 H 0.075 0.925 47 H 0.086 0.914 48 H 0.109 0.891 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.371 -17.353 24.080 29.872 hybrid contribution 0.062 0.421 -1.312 1.379 sum 3.433 -16.933 22.768 28.581 Atomic orbital electron populations 1.21975 0.94100 1.02818 1.01819 1.21841 0.95037 0.95776 0.85168 0.93358 1.21462 0.95300 0.91031 0.86155 0.90687 1.42552 1.80506 1.10855 1.03033 1.19653 1.36385 0.96218 0.84222 0.89646 1.25593 1.03166 0.95972 1.02223 1.69844 1.54167 1.05126 1.33147 0.85076 0.76490 0.77996 0.80191 1.18386 1.22692 1.22340 1.23412 0.98867 1.01503 0.95237 1.22768 0.96379 0.87604 0.95648 1.48524 1.51295 1.29032 1.03764 1.19471 0.79987 0.84308 0.83242 1.90837 1.42879 1.29704 1.83657 1.31335 1.15369 1.15126 1.16840 1.03687 0.72571 0.74274 0.75753 1.93594 1.71368 1.48920 1.82913 1.93525 1.32032 1.86616 1.85750 1.55560 1.16205 1.63507 1.50851 1.20522 0.78015 0.95003 0.99132 1.22691 1.01907 0.97052 1.02844 1.22064 1.03882 1.01421 0.93298 1.22736 1.04669 0.99211 0.97979 0.90685 0.93098 0.92030 0.79772 0.94158 0.88669 0.92404 0.87718 0.87014 0.77640 0.78735 0.73509 0.92284 0.88564 0.92759 0.90443 0.89397 0.92529 0.91412 0.89068 0.89764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.00 9.11 71.98 0.66 -4.34 16 2 C 0.13 4.38 3.22 45.28 0.15 4.53 16 3 H 0.05 2.01 7.70 -2.39 -0.02 1.99 16 4 C 0.17 6.05 3.12 46.18 0.14 6.19 16 5 H 0.08 2.57 7.81 -2.39 -0.02 2.55 16 6 N -0.73 -34.89 5.24 -317.33 -1.66 -36.55 16 7 C -0.23 -12.13 9.97 84.03 0.84 -11.30 16 8 H 0.09 4.15 7.83 -2.91 -0.02 4.13 16 9 C -0.08 -4.30 5.50 84.86 0.47 -3.84 16 10 N -0.97 -58.90 13.06 21.65 0.28 -58.62 16 11 Si 0.97 44.65 29.55 68.60 2.03 46.67 16 12 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 13 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 14 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 15 C -0.15 -4.08 6.77 31.98 0.22 -3.87 16 16 C 0.10 1.80 6.69 86.86 0.58 2.38 16 17 N -0.59 -16.27 3.08 -787.35 -2.42 -18.69 16 18 C 0.54 15.65 7.67 87.66 0.67 16.32 16 19 O -0.59 -23.10 14.69 1.58 0.02 -23.08 16 20 C -0.66 -10.78 3.74 71.24 0.27 -10.52 16 21 S 2.65 60.87 4.25 -56.49 -0.24 60.63 16 22 O -0.98 -29.58 14.49 -127.65 -1.85 -31.43 16 23 O -0.99 -31.31 17.75 -124.01 -2.20 -33.52 16 24 N -1.10 -13.71 5.42 -152.21 -0.82 -14.53 16 25 C 0.16 1.42 1.16 3.60 0.00 1.42 16 26 C -0.19 -2.51 7.09 71.98 0.51 -2.00 16 27 C -0.15 -0.81 8.65 71.98 0.62 -0.19 16 28 C -0.19 -0.69 8.61 71.98 0.62 -0.07 16 29 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.05 1.84 6.94 -2.39 -0.02 1.82 16 31 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.37 19.84 7.54 -92.71 -0.70 19.14 16 33 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 34 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.11 1.24 7.48 -2.39 -0.02 1.22 16 38 H 0.21 1.41 7.93 -2.39 -0.02 1.39 16 39 H 0.20 1.83 5.50 -2.39 -0.01 1.82 16 40 H 0.43 3.84 8.67 -96.75 -0.84 3.00 16 41 H 0.06 1.05 7.69 -2.39 -0.02 1.03 16 42 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.05 0.87 5.23 -2.39 -0.01 0.85 16 44 H 0.08 0.23 8.14 -2.38 -0.02 0.21 16 45 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 46 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 47 H 0.07 0.17 4.22 -2.39 -0.01 0.16 16 48 H 0.09 0.13 8.14 -2.39 -0.02 0.11 16 49 H 0.08 0.11 8.14 -2.39 -0.02 0.09 16 Total: -1.00 -84.58 392.53 -1.69 -86.28 By element: Atomic # 1 Polarization: 28.68 SS G_CDS: -0.57 Total: 28.11 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: 5.74 Total: -5.27 kcal Atomic # 7 Polarization: -123.77 SS G_CDS: -4.63 Total: -128.39 kcal Atomic # 8 Polarization: -83.99 SS G_CDS: -4.03 Total: -88.02 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Atomic # 16 Polarization: 60.87 SS G_CDS: -0.24 Total: 60.63 kcal Total: -84.58 -1.69 -86.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331938079.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.062 kcal (2) G-P(sol) polarization free energy of solvation -84.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds