Wall clock time and date at job start Wed Apr 1 2020 05:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47262 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46882 * 119.99668 * 8 6 4 11 11 H 1.48493 * 109.47394 * 239.99732 * 8 6 4 12 12 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 13 13 C 1.46509 * 119.99920 * 60.00125 * 12 2 1 14 14 S 1.65602 * 120.00679 * 239.99966 * 12 2 1 15 15 O 1.42100 * 106.40635 * 203.54125 * 14 12 2 16 16 O 1.42101 * 106.39740 * 336.46506 * 14 12 2 17 17 N 1.65609 * 107.21523 * 89.99672 * 14 12 2 18 18 C 1.46498 * 119.99588 * 65.00640 * 17 14 12 19 19 C 1.52997 * 109.46912 * 164.99807 * 18 17 14 20 20 H 1.08995 * 109.47599 * 55.00020 * 19 18 17 21 21 C 1.53006 * 109.47045 * 175.00299 * 19 18 17 22 22 C 1.53005 * 109.47184 * 180.02562 * 21 19 18 23 23 C 1.52999 * 109.46878 * 299.99468 * 22 21 19 24 24 H 1.09002 * 109.47393 * 300.00256 * 23 22 21 25 25 C 1.50694 * 109.47175 * 179.97438 * 23 22 21 26 26 N 1.34779 * 120.00181 * 179.97438 * 25 23 22 27 27 O 1.21283 * 119.99862 * 0.02562 * 25 23 22 28 28 C 1.53009 * 109.47152 * 59.99910 * 23 22 21 29 29 C 1.52999 * 109.47088 * 294.99810 * 19 18 17 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 33 33 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 34 34 H 1.09003 * 109.46975 * 89.99812 * 13 12 2 35 35 H 1.08995 * 109.47277 * 209.99863 * 13 12 2 36 36 H 1.09003 * 109.46743 * 330.00349 * 13 12 2 37 37 H 0.96997 * 120.00007 * 245.00053 * 17 14 12 38 38 H 1.09003 * 109.47531 * 284.99850 * 18 17 14 39 39 H 1.09004 * 109.47524 * 44.99568 * 18 17 14 40 40 H 1.09004 * 109.46688 * 299.99370 * 21 19 18 41 41 H 1.08990 * 109.47582 * 59.99638 * 21 19 18 42 42 H 1.08997 * 109.46945 * 59.99469 * 22 21 19 43 43 H 1.08995 * 109.47297 * 179.97438 * 22 21 19 44 44 H 0.96996 * 119.99816 * 0.02562 * 26 25 23 45 45 H 0.97000 * 120.00105 * 179.97438 * 26 25 23 46 46 H 1.09002 * 109.46689 * 59.99915 * 28 23 22 47 47 H 1.08994 * 109.47067 * 179.97438 * 28 23 22 48 48 H 1.08997 * 109.47334 * 299.99804 * 29 19 18 49 49 H 1.08995 * 109.46999 * 60.00052 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1456 -2.2877 -3.6037 10 1 1.1661 -1.5867 -4.8160 11 1 3.1467 -0.1875 -4.8164 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0932 1.4281 14 16 2.9704 0.1142 2.2863 15 8 3.7118 -0.8788 2.9816 16 8 3.5794 1.1830 1.5749 17 7 1.9606 0.8092 3.3998 18 6 1.1509 -0.0351 4.2817 19 6 0.6086 0.8077 5.4377 20 1 0.0666 1.6653 5.0392 21 6 -0.3368 -0.0424 6.2890 22 6 -0.8797 0.8006 7.4447 23 6 0.2838 1.2901 8.3093 24 1 0.8259 0.4327 8.7082 25 6 -0.2507 2.1209 9.4472 26 7 0.5981 2.6605 10.3444 27 8 -1.4448 2.3031 9.5563 28 6 1.2294 2.1401 7.4581 29 6 1.7724 1.2967 6.3021 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 0.7089 1.1612 -3.4844 34 1 2.4157 -2.7377 0.9718 35 1 1.6238 -2.2851 2.5002 36 1 0.6904 -2.3002 0.9847 37 1 1.9054 1.7752 3.4681 38 1 0.3187 -0.4566 3.7178 39 1 1.7668 -0.8423 4.6782 40 1 -1.1660 -0.3907 5.6731 41 1 0.2050 -0.9000 6.6875 42 1 -1.4217 1.6579 7.0457 43 1 -1.5535 0.1951 8.0508 44 1 1.5530 2.5145 10.2573 45 1 0.2540 3.1956 11.0766 46 1 0.6873 2.9975 7.0591 47 1 2.0580 2.4892 8.0741 48 1 2.3143 0.4391 6.7008 49 1 2.4459 1.9023 5.6958 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363934378.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:53:02 Heat of formation + Delta-G solvation = -143.443288 kcal Electronic energy + Delta-G solvation = -29813.199407 eV Core-core repulsion = 25707.743316 eV Total energy + Delta-G solvation = -4105.456091 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.44664 -38.40049 -36.64588 -36.15981 -35.21334 -35.02331 -34.03865 -32.57431 -31.19289 -30.85626 -29.09123 -26.03321 -25.56846 -25.12266 -23.01164 -22.64551 -20.83755 -20.56825 -20.03994 -18.70899 -17.87025 -17.25722 -16.96617 -16.83070 -16.43774 -15.74649 -15.64575 -15.11177 -14.82778 -14.68381 -14.36476 -14.14869 -14.03614 -13.47336 -13.26659 -13.18510 -12.80654 -12.70405 -12.53335 -12.25796 -12.02657 -11.80200 -11.73054 -11.48976 -11.40200 -11.36333 -11.34574 -11.22922 -10.98310 -10.82038 -10.77659 -10.66897 -10.46190 -10.36822 -10.26617 -10.08826 -10.03545 -10.01615 -9.29735 -9.20061 -8.45538 -7.96602 -6.06938 -4.13219 1.23375 2.29817 3.16255 3.28002 3.36191 3.40207 3.52539 4.12710 4.25934 4.31954 4.40302 4.41063 4.72080 4.78330 4.88002 5.00149 5.05102 5.14358 5.19311 5.24208 5.24717 5.42513 5.48511 5.53795 5.60284 5.71836 5.77682 5.82053 5.89242 5.95316 6.02449 6.13124 6.14207 6.25640 6.37678 6.38984 6.62990 6.77724 6.79940 6.93507 7.02429 7.17164 7.49848 7.64692 7.79866 7.90369 8.05057 8.28470 8.89459 9.52630 10.98786 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.024449 B = 0.002365 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.960495 B =11834.331289 C =12190.390951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.268 3.732 3 H 0.059 0.941 4 C -0.518 4.518 5 H 0.063 0.937 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.990 5.990 13 C 0.109 3.891 14 S 2.780 3.220 15 O -0.998 6.998 16 O -0.976 6.976 17 N -1.133 6.133 18 C 0.125 3.875 19 C -0.095 4.095 20 H 0.080 0.920 21 C -0.114 4.114 22 C -0.098 4.098 23 C -0.109 4.109 24 H 0.099 0.901 25 C 0.520 3.480 26 N -0.858 5.858 27 O -0.544 6.544 28 C -0.110 4.110 29 C -0.115 4.115 30 H 0.033 0.967 31 H 0.092 0.908 32 H 0.011 0.989 33 H 0.262 0.738 34 H 0.048 0.952 35 H 0.047 0.953 36 H 0.071 0.929 37 H 0.411 0.589 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.401 0.599 45 H 0.399 0.601 46 H 0.069 0.931 47 H 0.066 0.934 48 H 0.069 0.931 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.595 0.728 22.943 23.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.165 3.835 3 H 0.076 0.924 4 C -0.558 4.558 5 H 0.081 0.919 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.833 5.833 13 C -0.037 4.037 14 S 2.789 3.211 15 O -0.981 6.981 16 O -0.960 6.960 17 N -0.892 5.892 18 C -0.002 4.002 19 C -0.115 4.115 20 H 0.099 0.901 21 C -0.152 4.152 22 C -0.136 4.136 23 C -0.130 4.130 24 H 0.117 0.883 25 C 0.306 3.694 26 N -0.421 5.421 27 O -0.420 6.420 28 C -0.148 4.148 29 C -0.153 4.153 30 H 0.052 0.948 31 H 0.111 0.889 32 H 0.030 0.970 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.244 0.756 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.230 0.770 45 H 0.230 0.770 46 H 0.088 0.912 47 H 0.085 0.915 48 H 0.088 0.912 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.500 0.682 22.692 22.751 hybrid contribution 0.190 0.147 -0.558 0.608 sum -1.309 0.829 22.133 22.187 Atomic orbital electron populations 1.22114 0.98286 0.99665 1.00631 1.18725 0.91257 0.92990 0.80525 0.92369 1.21375 1.31422 1.12938 0.90044 0.91919 1.24914 0.95003 0.95030 0.99026 1.69864 1.36646 1.22777 1.23650 0.86445 0.78585 0.79670 0.82725 1.19747 1.21022 1.20924 1.57677 1.70014 1.19763 1.35837 1.21158 1.01719 0.82215 0.98645 1.01908 0.73652 0.73150 0.72415 1.93531 1.69178 1.60794 1.74581 1.93612 1.74449 1.56012 1.71927 1.56201 1.62622 1.17284 1.53070 1.21252 0.94888 0.93174 0.90870 1.21399 0.96374 0.98906 0.94791 0.90144 1.21574 0.99070 0.98096 0.96508 1.21334 0.95871 1.00424 0.95957 1.21409 0.98843 0.98634 0.94120 0.88314 1.20808 0.86409 0.79198 0.83029 1.43939 1.10965 1.56102 1.31135 1.90749 1.15858 1.60243 1.75147 1.21560 0.97934 0.98300 0.96977 1.21614 0.97563 1.00031 0.96055 0.94805 0.88924 0.97015 0.92777 0.93313 0.93411 0.90994 0.75611 0.91676 0.90713 0.90907 0.91412 0.91040 0.91135 0.77014 0.77029 0.91201 0.91540 0.91242 0.90971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 8.95 37.16 0.33 -2.94 16 2 C 0.27 6.45 2.62 -69.09 -0.18 6.27 16 3 H 0.06 1.56 6.91 -51.93 -0.36 1.20 16 4 C -0.52 -13.87 8.37 -34.44 -0.29 -14.16 16 5 H 0.06 1.68 7.65 -52.49 -0.40 1.28 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.69 11.32 55.43 0.63 -24.06 16 8 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 9 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 N -0.99 -19.95 3.12 -115.85 -0.36 -20.31 16 13 C 0.11 1.88 9.53 59.85 0.57 2.45 16 14 S 2.78 52.31 6.10 -107.50 -0.66 51.65 16 15 O -1.00 -19.90 16.68 -57.17 -0.95 -20.85 16 16 O -0.98 -22.25 16.70 -57.17 -0.95 -23.21 16 17 N -1.13 -15.36 5.58 -10.61 -0.06 -15.41 16 18 C 0.12 1.37 5.64 -4.04 -0.02 1.35 16 19 C -0.09 -0.81 2.21 -90.62 -0.20 -1.01 16 20 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 21 C -0.11 -0.86 5.20 -26.73 -0.14 -1.00 16 22 C -0.10 -0.79 4.49 -26.73 -0.12 -0.91 16 23 C -0.11 -0.74 2.53 -91.77 -0.23 -0.97 16 24 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 25 C 0.52 4.38 7.42 -10.99 -0.08 4.30 16 26 N -0.86 -4.07 8.77 31.22 0.27 -3.79 16 27 O -0.54 -7.02 16.82 5.55 0.09 -6.93 16 28 C -0.11 -0.69 5.10 -26.70 -0.14 -0.83 16 29 C -0.12 -0.88 5.09 -26.71 -0.14 -1.02 16 30 H 0.03 0.70 6.66 -51.93 -0.35 0.36 16 31 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 32 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.67 7.79 -51.93 -0.40 0.27 16 36 H 0.07 1.20 6.43 -51.93 -0.33 0.86 16 37 H 0.41 4.90 8.37 -34.48 -0.29 4.61 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.82 7.75 -51.93 -0.40 0.42 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 43 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 44 H 0.40 0.83 8.25 -40.82 -0.34 0.49 16 45 H 0.40 1.62 8.93 -40.82 -0.36 1.25 16 46 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.07 0.30 7.56 -51.93 -0.39 -0.09 16 48 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 49 H 0.07 0.60 7.53 -51.93 -0.39 0.21 16 LS Contribution 396.10 15.07 5.97 5.97 Total: -1.00 -35.14 396.10 -9.89 -45.03 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -8.12 Total: 2.71 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -0.73 Total: -6.88 kcal Atomic # 7 Polarization: -64.06 SS G_CDS: 0.48 Total: -63.58 kcal Atomic # 8 Polarization: -49.17 SS G_CDS: -1.82 Total: -50.99 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 52.31 SS G_CDS: -0.66 Total: 51.65 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.14 -9.89 -45.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363934378.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.415 kcal (2) G-P(sol) polarization free energy of solvation -35.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds