Wall clock time and date at job start Wed Apr 1 2020 05:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47262 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46882 * 119.99668 * 8 6 4 11 11 H 1.48493 * 109.47394 * 239.99732 * 8 6 4 12 12 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 13 13 C 1.46509 * 119.99920 * 60.00125 * 12 2 1 14 14 S 1.65602 * 120.00679 * 239.99966 * 12 2 1 15 15 O 1.42100 * 106.40635 * 203.54125 * 14 12 2 16 16 O 1.42101 * 106.39740 * 336.46506 * 14 12 2 17 17 N 1.65609 * 107.21523 * 89.99672 * 14 12 2 18 18 C 1.46498 * 119.99588 * 65.00640 * 17 14 12 19 19 C 1.52997 * 109.46912 * 164.99807 * 18 17 14 20 20 H 1.08995 * 109.47599 * 55.00020 * 19 18 17 21 21 C 1.53006 * 109.47045 * 175.00299 * 19 18 17 22 22 C 1.53005 * 109.47184 * 180.02562 * 21 19 18 23 23 C 1.52999 * 109.46878 * 299.99468 * 22 21 19 24 24 H 1.09002 * 109.47393 * 300.00256 * 23 22 21 25 25 C 1.50694 * 109.47175 * 179.97438 * 23 22 21 26 26 N 1.34779 * 120.00181 * 179.97438 * 25 23 22 27 27 O 1.21283 * 119.99862 * 0.02562 * 25 23 22 28 28 C 1.53009 * 109.47152 * 59.99910 * 23 22 21 29 29 C 1.52999 * 109.47088 * 294.99810 * 19 18 17 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 33 33 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 34 34 H 1.09003 * 109.46975 * 89.99812 * 13 12 2 35 35 H 1.08995 * 109.47277 * 209.99863 * 13 12 2 36 36 H 1.09003 * 109.46743 * 330.00349 * 13 12 2 37 37 H 0.96997 * 120.00007 * 245.00053 * 17 14 12 38 38 H 1.09003 * 109.47531 * 284.99850 * 18 17 14 39 39 H 1.09004 * 109.47524 * 44.99568 * 18 17 14 40 40 H 1.09004 * 109.46688 * 299.99370 * 21 19 18 41 41 H 1.08990 * 109.47582 * 59.99638 * 21 19 18 42 42 H 1.08997 * 109.46945 * 59.99469 * 22 21 19 43 43 H 1.08995 * 109.47297 * 179.97438 * 22 21 19 44 44 H 0.96996 * 119.99816 * 0.02562 * 26 25 23 45 45 H 0.97000 * 120.00105 * 179.97438 * 26 25 23 46 46 H 1.09002 * 109.46689 * 59.99915 * 28 23 22 47 47 H 1.08994 * 109.47067 * 179.97438 * 28 23 22 48 48 H 1.08997 * 109.47334 * 299.99804 * 29 19 18 49 49 H 1.08995 * 109.46999 * 60.00052 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1456 -2.2877 -3.6037 10 1 1.1661 -1.5867 -4.8160 11 1 3.1467 -0.1875 -4.8164 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0932 1.4281 14 16 2.9704 0.1142 2.2863 15 8 3.7118 -0.8788 2.9816 16 8 3.5794 1.1830 1.5749 17 7 1.9606 0.8092 3.3998 18 6 1.1509 -0.0351 4.2817 19 6 0.6086 0.8077 5.4377 20 1 0.0666 1.6653 5.0392 21 6 -0.3368 -0.0424 6.2890 22 6 -0.8797 0.8006 7.4447 23 6 0.2838 1.2901 8.3093 24 1 0.8259 0.4327 8.7082 25 6 -0.2507 2.1209 9.4472 26 7 0.5981 2.6605 10.3444 27 8 -1.4448 2.3031 9.5563 28 6 1.2294 2.1401 7.4581 29 6 1.7724 1.2967 6.3021 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 0.7089 1.1612 -3.4844 34 1 2.4157 -2.7377 0.9718 35 1 1.6238 -2.2851 2.5002 36 1 0.6904 -2.3002 0.9847 37 1 1.9054 1.7752 3.4681 38 1 0.3187 -0.4566 3.7178 39 1 1.7668 -0.8423 4.6782 40 1 -1.1660 -0.3907 5.6731 41 1 0.2050 -0.9000 6.6875 42 1 -1.4217 1.6579 7.0457 43 1 -1.5535 0.1951 8.0508 44 1 1.5530 2.5145 10.2573 45 1 0.2540 3.1956 11.0766 46 1 0.6873 2.9975 7.0591 47 1 2.0580 2.4892 8.0741 48 1 2.3143 0.4391 6.7008 49 1 2.4459 1.9023 5.6958 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363934378.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:53:01 Heat of formation + Delta-G solvation = -171.586387 kcal Electronic energy + Delta-G solvation = -29814.419783 eV Core-core repulsion = 25707.743316 eV Total energy + Delta-G solvation = -4106.676467 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.08132 -39.12648 -38.25400 -37.85804 -36.83272 -35.96754 -34.64005 -34.50514 -31.88864 -31.52137 -30.88591 -27.26817 -27.02227 -26.74720 -23.60826 -23.36323 -22.56269 -21.28889 -20.69299 -20.08283 -18.74495 -18.54095 -18.37854 -18.09546 -17.56522 -17.20309 -16.70199 -16.34389 -15.97525 -15.49943 -15.38748 -15.12656 -14.90091 -14.80884 -14.66972 -14.52599 -13.99289 -13.69596 -13.57685 -13.35891 -13.18805 -13.13680 -13.09892 -13.01880 -12.95614 -12.80690 -12.77451 -12.55966 -12.20937 -12.13609 -12.09279 -11.98356 -11.87742 -11.56431 -11.30267 -11.11454 -10.99653 -10.75464 -10.60405 -10.50379 -10.33584 -9.63248 -8.10746 -6.23848 -0.25501 1.41484 1.44481 1.54842 1.67297 2.10678 2.44297 2.66750 2.70378 3.17596 3.47791 3.70450 3.72139 3.81182 4.08260 4.12400 4.16761 4.25316 4.46456 4.54173 4.56967 4.62355 4.63648 4.71285 4.77231 4.86131 4.90569 5.00692 5.03101 5.08469 5.13130 5.17318 5.19159 5.22837 5.25183 5.32839 5.34933 5.48398 5.61099 5.63711 5.74388 5.90629 5.93630 6.09837 6.25200 6.32925 6.49877 6.84345 7.38907 7.45114 8.93420 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.024449 B = 0.002365 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.960495 B =11834.331289 C =12190.390951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.273 3.727 3 H 0.024 0.976 4 C -0.536 4.536 5 H 0.055 0.945 6 C 0.016 3.984 7 N -0.914 5.914 8 Si 0.955 3.045 9 H -0.270 1.270 10 H -0.275 1.275 11 H -0.285 1.285 12 N -0.998 5.998 13 C 0.102 3.898 14 S 2.797 3.203 15 O -1.008 7.008 16 O -1.021 7.021 17 N -1.116 6.116 18 C 0.117 3.883 19 C -0.090 4.090 20 H 0.076 0.924 21 C -0.108 4.108 22 C -0.096 4.096 23 C -0.103 4.103 24 H 0.121 0.879 25 C 0.517 3.483 26 N -0.839 5.839 27 O -0.597 6.597 28 C -0.104 4.104 29 C -0.117 4.117 30 H 0.043 0.957 31 H 0.064 0.936 32 H 0.036 0.964 33 H 0.264 0.736 34 H 0.038 0.962 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.420 0.580 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.052 0.948 43 H 0.063 0.937 44 H 0.417 0.583 45 H 0.405 0.595 46 H 0.058 0.942 47 H 0.090 0.910 48 H 0.078 0.922 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.261 -0.262 24.500 24.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.168 3.832 3 H 0.042 0.958 4 C -0.575 4.575 5 H 0.074 0.926 6 C -0.184 4.184 7 N -0.553 5.553 8 Si 0.781 3.219 9 H -0.195 1.195 10 H -0.200 1.200 11 H -0.211 1.211 12 N -0.839 5.839 13 C -0.043 4.043 14 S 2.806 3.194 15 O -0.991 6.991 16 O -1.005 7.005 17 N -0.880 5.880 18 C -0.009 4.009 19 C -0.110 4.110 20 H 0.095 0.905 21 C -0.146 4.146 22 C -0.134 4.134 23 C -0.125 4.125 24 H 0.139 0.861 25 C 0.303 3.697 26 N -0.403 5.403 27 O -0.477 6.477 28 C -0.142 4.142 29 C -0.154 4.154 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.256 0.744 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.100 0.900 42 H 0.071 0.929 43 H 0.081 0.919 44 H 0.249 0.751 45 H 0.236 0.764 46 H 0.077 0.923 47 H 0.108 0.892 48 H 0.096 0.904 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.116 -0.317 24.271 24.298 hybrid contribution 0.110 0.471 -0.925 1.044 sum -1.006 0.154 23.346 23.368 Atomic orbital electron populations 1.21901 0.96804 1.00225 1.00460 1.18380 0.92245 0.91300 0.81237 0.95779 1.21689 1.31409 1.12898 0.91534 0.92636 1.25637 0.95302 0.95755 1.01670 1.69978 1.37388 1.23745 1.24225 0.85562 0.78246 0.78588 0.79552 1.19462 1.20040 1.21072 1.57564 1.70015 1.21043 1.35323 1.21363 1.01613 0.80406 1.00935 1.01182 0.73617 0.72288 0.72317 1.93511 1.69832 1.61233 1.74536 1.93548 1.76051 1.57489 1.73462 1.55741 1.62269 1.18011 1.51942 1.21547 0.94759 0.93370 0.91220 1.21363 0.96858 0.98562 0.94198 0.90544 1.21527 0.98903 0.98126 0.96048 1.21272 0.96261 0.99693 0.96208 1.21399 0.98411 0.99169 0.93475 0.86073 1.21105 0.85922 0.79074 0.83644 1.43806 1.11553 1.54718 1.30181 1.90730 1.18105 1.62350 1.76544 1.21519 0.98351 0.97550 0.96738 1.21635 0.97089 1.00463 0.96243 0.93776 0.91702 0.94494 0.92699 0.94286 0.89943 0.90416 0.74447 0.91078 0.90112 0.90889 0.90025 0.92919 0.91870 0.75142 0.76447 0.92294 0.89193 0.90351 0.91597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.90 8.95 71.98 0.64 -5.25 16 2 C 0.27 13.22 2.62 44.24 0.12 13.33 16 3 H 0.02 1.34 6.91 -2.39 -0.02 1.32 16 4 C -0.54 -28.91 8.37 25.60 0.21 -28.69 16 5 H 0.06 2.99 7.65 -2.91 -0.02 2.97 16 6 C 0.02 0.87 5.30 84.66 0.45 1.32 16 7 N -0.91 -51.29 11.32 21.45 0.24 -51.04 16 8 Si 0.95 43.35 29.54 68.60 2.03 45.37 16 9 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 N -1.00 -39.54 3.12 -520.44 -1.62 -41.17 16 13 C 0.10 3.36 9.53 127.77 1.22 4.58 16 14 S 2.80 103.44 6.10 -56.49 -0.34 103.10 16 15 O -1.01 -38.79 16.68 -128.00 -2.14 -40.92 16 16 O -1.02 -47.27 16.70 -128.00 -2.14 -49.41 16 17 N -1.12 -28.60 5.58 -187.49 -1.05 -29.64 16 18 C 0.12 2.28 5.64 86.38 0.49 2.76 16 19 C -0.09 -1.34 2.21 -10.79 -0.02 -1.36 16 20 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 21 C -0.11 -1.39 5.20 30.60 0.16 -1.23 16 22 C -0.10 -1.44 4.49 30.60 0.14 -1.30 16 23 C -0.10 -1.18 2.53 -11.54 -0.03 -1.21 16 24 H 0.12 0.87 8.14 -2.39 -0.02 0.86 16 25 C 0.52 7.98 7.42 87.65 0.65 8.63 16 26 N -0.84 -6.15 8.77 -173.53 -1.52 -7.67 16 27 O -0.60 -15.37 16.82 -3.04 -0.05 -15.42 16 28 C -0.10 -1.05 5.10 30.61 0.16 -0.90 16 29 C -0.12 -1.49 5.09 30.61 0.16 -1.33 16 30 H 0.04 1.80 6.66 -2.39 -0.02 1.78 16 31 H 0.06 3.24 6.07 -2.39 -0.01 3.22 16 32 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 34 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.08 2.10 7.79 -2.39 -0.02 2.08 16 36 H 0.08 2.44 6.43 -2.39 -0.02 2.43 16 37 H 0.42 9.52 8.37 -96.74 -0.81 8.71 16 38 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.08 1.53 7.75 -2.38 -0.02 1.51 16 40 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 41 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.05 0.98 8.10 -2.39 -0.02 0.96 16 43 H 0.06 1.04 8.10 -2.39 -0.02 1.02 16 44 H 0.42 0.44 8.25 -92.71 -0.76 -0.32 16 45 H 0.40 2.56 8.93 -92.71 -0.83 1.73 16 46 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.09 0.51 7.56 -2.39 -0.02 0.49 16 48 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 49 H 0.07 0.95 7.53 -2.39 -0.02 0.93 16 Total: -1.00 -77.05 396.10 -3.68 -80.73 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -1.42 Total: 16.73 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: 4.33 Total: -10.65 kcal Atomic # 7 Polarization: -125.58 SS G_CDS: -3.95 Total: -129.53 kcal Atomic # 8 Polarization: -101.42 SS G_CDS: -4.32 Total: -105.75 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: 103.44 SS G_CDS: -0.34 Total: 103.10 kcal Total: -77.05 -3.68 -80.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363934378.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.860 kcal (2) G-P(sol) polarization free energy of solvation -77.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds