Wall clock time and date at job start Wed Apr 1 2020 04:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47485 * 2 1 4 4 N 1.46497 * 109.47122 * 179.97438 * 3 2 1 5 5 C 1.46768 * 124.34381 * 90.00725 * 4 3 2 6 6 C 1.54487 * 105.46844 * 197.01165 * 5 4 3 7 7 H 1.08996 * 110.96729 * 92.70209 * 6 5 4 8 8 C 1.52993 * 110.96601 * 216.42535 * 6 5 4 9 9 N 1.46505 * 109.47221 * 185.00070 * 8 6 5 10 10 S 1.65598 * 120.00271 * 164.99860 * 9 8 6 11 11 O 1.42105 * 106.40322 * 178.54015 * 10 9 8 12 12 O 1.42101 * 106.40485 * 311.46077 * 10 9 8 13 13 N 1.65600 * 107.21672 * 65.00156 * 10 9 8 14 14 C 1.46512 * 119.99872 * 89.99974 * 13 10 9 15 15 C 1.46493 * 120.00234 * 270.00060 * 13 10 9 16 16 H 1.09001 * 109.46820 * 359.97438 * 15 13 10 17 17 C 1.53002 * 109.47279 * 120.00056 * 15 13 10 18 18 C 1.50706 * 109.47069 * 239.99837 * 15 13 10 19 19 H 1.07995 * 119.99687 * 0.02562 * 18 15 13 20 20 C 1.37881 * 120.00078 * 179.97438 * 18 15 13 21 21 N 1.31519 * 119.99693 * 0.02562 * 20 18 15 22 22 Si 1.86797 * 120.00220 * 180.02562 * 20 18 15 23 23 H 1.48497 * 109.46974 * 90.00030 * 22 20 18 24 24 H 1.48496 * 109.47308 * 210.00290 * 22 20 18 25 25 H 1.48501 * 109.47066 * 330.00536 * 22 20 18 26 26 C 1.54619 * 101.76557 * 334.58255 * 6 5 4 27 27 C 1.34413 * 124.35463 * 269.99922 * 4 3 2 28 28 O 1.21283 * 124.94031 * 359.62849 * 27 4 3 29 29 H 1.08995 * 109.47175 * 60.00015 * 1 2 3 30 30 H 1.08998 * 109.47275 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46983 * 299.99724 * 1 2 3 32 32 H 1.09009 * 109.47223 * 239.99647 * 2 1 3 33 33 H 1.09004 * 109.47382 * 120.00553 * 2 1 3 34 34 H 1.09002 * 109.46785 * 60.00155 * 3 2 1 35 35 H 1.08995 * 109.46902 * 300.00152 * 3 2 1 36 36 H 1.09000 * 110.25007 * 78.01166 * 5 4 3 37 37 H 1.09004 * 110.24485 * 316.00872 * 5 4 3 38 38 H 1.09007 * 109.47635 * 305.00032 * 8 6 5 39 39 H 1.09006 * 109.47319 * 65.00237 * 8 6 5 40 40 H 0.97002 * 119.99450 * 345.00367 * 9 8 6 41 41 H 1.09002 * 109.46923 * 90.00006 * 14 13 10 42 42 H 1.09000 * 109.46801 * 209.99956 * 14 13 10 43 43 H 1.08996 * 109.46719 * 329.99807 * 14 13 10 44 44 H 1.09001 * 109.47353 * 60.00132 * 17 15 13 45 45 H 1.09001 * 109.47172 * 180.02562 * 17 15 13 46 46 H 1.08995 * 109.46939 * 299.99788 * 17 15 13 47 47 H 0.97002 * 119.99855 * 179.97438 * 21 20 18 48 48 H 1.09007 * 110.48907 * 143.47513 * 26 6 5 49 49 H 1.09001 * 110.48711 * 265.98708 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.3336 1.4423 -1.2108 6 6 5.7413 1.0066 -0.7472 7 1 5.8672 -0.0718 -0.8431 8 6 6.8285 1.7530 -1.5228 9 7 8.1441 1.2314 -1.1440 10 16 9.4706 1.5762 -2.0735 11 8 10.5807 0.9642 -1.4313 12 8 9.1013 1.3005 -3.4177 13 7 9.7209 3.2107 -1.9832 14 6 10.5826 3.7630 -0.9349 15 6 9.0807 4.1044 -2.9515 16 1 8.4837 3.5167 -3.6488 17 6 8.1767 5.0933 -2.2128 18 6 10.1387 4.8622 -3.7115 19 1 11.1834 4.6945 -3.4952 20 6 9.7729 5.7689 -4.6838 21 7 8.5007 5.9727 -4.9475 22 14 11.0842 6.7077 -5.6263 23 1 11.4682 5.9397 -6.8379 24 1 10.5506 8.0336 -6.0291 25 1 12.2764 6.8959 -4.7612 26 6 5.7296 1.4323 0.7392 27 6 4.2631 1.4425 1.1106 28 8 3.8338 1.4492 2.2449 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 4.3713 2.4426 -1.6422 37 1 3.9391 0.7320 -1.9375 38 1 6.6752 1.6098 -2.5925 39 1 6.7778 2.8162 -1.2876 40 1 8.2381 0.6840 -0.3488 41 1 11.6100 3.8096 -1.2962 42 1 10.2426 4.7657 -0.6760 43 1 10.5363 3.1245 -0.0528 44 1 8.7741 5.6809 -1.5157 45 1 7.7000 5.7579 -2.9333 46 1 7.4115 4.5452 -1.6631 47 1 8.2433 6.6108 -5.6313 48 1 6.2721 0.7087 1.3476 49 1 6.1613 2.4265 0.8547 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365715826.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:04 Heat of formation + Delta-G solvation = -118.002205 kcal Electronic energy + Delta-G solvation = -29971.707417 eV Core-core repulsion = 25867.354535 eV Total energy + Delta-G solvation = -4104.352883 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.70901 -37.18058 -36.69005 -36.21508 -35.95162 -35.25856 -34.13363 -32.61456 -31.35341 -29.15571 -28.25457 -26.74954 -25.63548 -25.20700 -24.77478 -22.09832 -21.20945 -20.80102 -19.74199 -18.72426 -17.36606 -17.20412 -16.96994 -16.64251 -16.25220 -15.84366 -15.44798 -15.01759 -14.84810 -14.47441 -14.37267 -13.96597 -13.89588 -13.63105 -13.32680 -13.25298 -12.92491 -12.78084 -12.55282 -12.43261 -12.24282 -12.01296 -11.77209 -11.69350 -11.62159 -11.52501 -11.43751 -11.31129 -11.25786 -11.12045 -11.03961 -10.98266 -10.85279 -10.48406 -10.32013 -10.06192 -9.91736 -9.35789 -9.29966 -8.94290 -8.48972 -8.02534 -6.11877 -4.17681 1.15187 2.41935 2.75693 3.26864 3.33508 3.36266 3.45354 4.02457 4.11510 4.21490 4.37103 4.43117 4.60698 4.63218 4.77452 4.92397 4.99790 5.06276 5.12342 5.20068 5.23204 5.28884 5.32424 5.46496 5.47490 5.51338 5.58838 5.66042 5.67574 5.76296 5.85048 5.89830 6.01644 6.12603 6.32120 6.35381 6.58490 6.70473 6.74211 6.89306 6.92959 7.08473 7.43184 7.58663 7.74271 7.98917 7.99210 8.23092 8.84627 9.48417 10.93873 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013842 B = 0.002874 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.381570 B = 9740.243021 C =10745.585906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.141 4.141 3 C 0.125 3.875 4 N -0.620 5.620 5 C 0.106 3.894 6 C -0.105 4.105 7 H 0.099 0.901 8 C 0.127 3.873 9 N -1.134 6.134 10 S 2.780 3.220 11 O -0.996 6.996 12 O -0.974 6.974 13 N -0.991 5.991 14 C 0.111 3.889 15 C 0.267 3.733 16 H 0.059 0.941 17 C -0.150 4.150 18 C -0.519 4.519 19 H 0.062 0.938 20 C 0.064 3.936 21 N -0.891 5.891 22 Si 0.898 3.102 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.274 1.274 26 C -0.153 4.153 27 C 0.519 3.481 28 O -0.536 6.536 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.409 0.591 41 H 0.048 0.952 42 H 0.071 0.929 43 H 0.049 0.951 44 H 0.034 0.966 45 H 0.093 0.907 46 H 0.011 0.989 47 H 0.263 0.737 48 H 0.102 0.898 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.988 -8.747 8.969 17.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.180 4.180 3 C 0.003 3.997 4 N -0.354 5.354 5 C -0.018 4.018 6 C -0.126 4.126 7 H 0.117 0.883 8 C 0.000 4.000 9 N -0.893 5.893 10 S 2.789 3.211 11 O -0.980 6.980 12 O -0.957 6.957 13 N -0.834 5.834 14 C -0.035 4.035 15 C 0.164 3.836 16 H 0.077 0.923 17 C -0.209 4.209 18 C -0.559 4.559 19 H 0.080 0.920 20 C -0.138 4.138 21 N -0.530 5.530 22 Si 0.725 3.275 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.199 1.199 26 C -0.193 4.193 27 C 0.307 3.693 28 O -0.413 6.413 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.241 0.759 41 H 0.067 0.933 42 H 0.090 0.910 43 H 0.067 0.933 44 H 0.053 0.947 45 H 0.112 0.888 46 H 0.030 0.970 47 H 0.073 0.927 48 H 0.121 0.879 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -11.917 -9.138 8.765 17.388 hybrid contribution 0.482 0.639 -0.071 0.804 sum -11.435 -8.499 8.695 16.691 Atomic orbital electron populations 1.21693 0.94968 1.02049 1.02036 1.21914 0.96291 0.97141 1.02648 1.21450 0.77886 0.97068 1.03321 1.48323 1.06195 1.73473 1.07364 1.22145 0.89416 1.02949 0.87293 1.22365 0.94014 1.01879 0.94301 0.88264 1.21295 0.80920 0.97839 0.99897 1.56193 1.22344 1.67106 1.43627 1.01947 0.72586 0.73220 0.73369 1.93556 1.50352 1.76565 1.77514 1.93599 1.83651 1.83844 1.34581 1.57689 1.59793 1.25033 1.40842 1.21131 0.94323 0.99692 0.88404 1.18742 0.92065 0.87937 0.84868 0.92293 1.22183 0.97978 1.00719 1.00047 1.21330 0.93216 1.22433 1.18898 0.91966 1.24892 0.95554 0.96716 0.96669 1.69842 1.14956 1.35665 1.32510 0.86505 0.81665 0.79035 0.80258 1.20562 1.21198 1.19900 1.22499 0.94492 1.05409 0.96945 1.20945 0.89319 0.74749 0.84277 1.90716 1.78794 1.50584 1.21231 0.92454 0.92409 0.92486 0.91650 0.91655 0.90041 0.90133 0.89900 0.89775 0.89448 0.90472 0.75853 0.93316 0.91012 0.93267 0.94686 0.88817 0.96995 0.92711 0.87935 0.87068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.55 16 2 C -0.14 -1.06 6.26 -26.73 -0.17 -1.23 16 3 C 0.12 1.03 5.93 -4.04 -0.02 1.01 16 4 N -0.62 -5.94 2.93 -172.41 -0.51 -6.45 16 5 C 0.11 0.84 6.91 -3.12 -0.02 0.82 16 6 C -0.11 -0.89 3.21 -88.99 -0.29 -1.18 16 7 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 8 C 0.13 1.42 5.55 -4.04 -0.02 1.40 16 9 N -1.13 -14.11 6.01 -10.61 -0.06 -14.18 16 10 S 2.78 49.79 6.09 -107.50 -0.66 49.14 16 11 O -1.00 -19.47 17.21 -57.17 -0.98 -20.45 16 12 O -0.97 -21.04 16.17 -57.17 -0.92 -21.96 16 13 N -0.99 -19.03 3.12 -115.84 -0.36 -19.39 16 14 C 0.11 1.87 9.53 59.85 0.57 2.44 16 15 C 0.27 6.04 2.62 -69.08 -0.18 5.86 16 16 H 0.06 1.47 6.91 -51.93 -0.36 1.11 16 17 C -0.15 -3.09 8.95 37.16 0.33 -2.76 16 18 C -0.52 -13.42 8.37 -34.44 -0.29 -13.71 16 19 H 0.06 1.62 7.65 -52.49 -0.40 1.22 16 20 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 21 N -0.89 -23.71 11.32 55.43 0.63 -23.08 16 22 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 C -0.15 -1.42 6.24 -26.75 -0.17 -1.58 16 27 C 0.52 6.14 8.02 -10.86 -0.09 6.06 16 28 O -0.54 -8.41 17.59 5.56 0.10 -8.31 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.76 7.92 -51.93 -0.41 0.35 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.65 7.89 -51.93 -0.41 0.24 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.09 1.06 7.75 -51.93 -0.40 0.66 16 39 H 0.08 0.89 5.97 -51.93 -0.31 0.58 16 40 H 0.41 4.05 8.53 -34.47 -0.29 3.75 16 41 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.07 1.17 6.43 -51.93 -0.33 0.83 16 43 H 0.05 0.69 7.79 -51.93 -0.40 0.29 16 44 H 0.03 0.70 6.66 -51.93 -0.35 0.35 16 45 H 0.09 2.18 6.07 -51.93 -0.32 1.87 16 46 H 0.01 0.20 6.18 -51.93 -0.32 -0.13 16 47 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 48 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.11 1.02 7.76 -51.93 -0.40 0.62 16 LS Contribution 401.37 15.07 6.05 6.05 Total: -1.00 -33.55 401.37 -9.88 -43.44 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -8.07 Total: 1.45 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: -0.07 Total: -1.85 kcal Atomic # 7 Polarization: -62.79 SS G_CDS: -0.30 Total: -63.10 kcal Atomic # 8 Polarization: -48.91 SS G_CDS: -1.81 Total: -50.72 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: 49.79 SS G_CDS: -0.66 Total: 49.14 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.55 -9.88 -43.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365715826.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.567 kcal (2) G-P(sol) polarization free energy of solvation -33.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds