Wall clock time and date at job start Wed Apr 1 2020 04:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47485 * 2 1 4 4 N 1.46497 * 109.47122 * 179.97438 * 3 2 1 5 5 C 1.46768 * 124.34381 * 90.00725 * 4 3 2 6 6 C 1.54487 * 105.46844 * 197.01165 * 5 4 3 7 7 H 1.08996 * 110.96729 * 92.70209 * 6 5 4 8 8 C 1.52993 * 110.96601 * 216.42535 * 6 5 4 9 9 N 1.46505 * 109.47221 * 185.00070 * 8 6 5 10 10 S 1.65598 * 120.00271 * 164.99860 * 9 8 6 11 11 O 1.42105 * 106.40322 * 178.54015 * 10 9 8 12 12 O 1.42101 * 106.40485 * 311.46077 * 10 9 8 13 13 N 1.65600 * 107.21672 * 65.00156 * 10 9 8 14 14 C 1.46512 * 119.99872 * 89.99974 * 13 10 9 15 15 C 1.46493 * 120.00234 * 270.00060 * 13 10 9 16 16 H 1.09001 * 109.46820 * 359.97438 * 15 13 10 17 17 C 1.53002 * 109.47279 * 120.00056 * 15 13 10 18 18 C 1.50706 * 109.47069 * 239.99837 * 15 13 10 19 19 H 1.07995 * 119.99687 * 0.02562 * 18 15 13 20 20 C 1.37881 * 120.00078 * 179.97438 * 18 15 13 21 21 N 1.31519 * 119.99693 * 0.02562 * 20 18 15 22 22 Si 1.86797 * 120.00220 * 180.02562 * 20 18 15 23 23 H 1.48497 * 109.46974 * 90.00030 * 22 20 18 24 24 H 1.48496 * 109.47308 * 210.00290 * 22 20 18 25 25 H 1.48501 * 109.47066 * 330.00536 * 22 20 18 26 26 C 1.54619 * 101.76557 * 334.58255 * 6 5 4 27 27 C 1.34413 * 124.35463 * 269.99922 * 4 3 2 28 28 O 1.21283 * 124.94031 * 359.62849 * 27 4 3 29 29 H 1.08995 * 109.47175 * 60.00015 * 1 2 3 30 30 H 1.08998 * 109.47275 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46983 * 299.99724 * 1 2 3 32 32 H 1.09009 * 109.47223 * 239.99647 * 2 1 3 33 33 H 1.09004 * 109.47382 * 120.00553 * 2 1 3 34 34 H 1.09002 * 109.46785 * 60.00155 * 3 2 1 35 35 H 1.08995 * 109.46902 * 300.00152 * 3 2 1 36 36 H 1.09000 * 110.25007 * 78.01166 * 5 4 3 37 37 H 1.09004 * 110.24485 * 316.00872 * 5 4 3 38 38 H 1.09007 * 109.47635 * 305.00032 * 8 6 5 39 39 H 1.09006 * 109.47319 * 65.00237 * 8 6 5 40 40 H 0.97002 * 119.99450 * 345.00367 * 9 8 6 41 41 H 1.09002 * 109.46923 * 90.00006 * 14 13 10 42 42 H 1.09000 * 109.46801 * 209.99956 * 14 13 10 43 43 H 1.08996 * 109.46719 * 329.99807 * 14 13 10 44 44 H 1.09001 * 109.47353 * 60.00132 * 17 15 13 45 45 H 1.09001 * 109.47172 * 180.02562 * 17 15 13 46 46 H 1.08995 * 109.46939 * 299.99788 * 17 15 13 47 47 H 0.97002 * 119.99855 * 179.97438 * 21 20 18 48 48 H 1.09007 * 110.48907 * 143.47513 * 26 6 5 49 49 H 1.09001 * 110.48711 * 265.98708 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.3336 1.4423 -1.2108 6 6 5.7413 1.0066 -0.7472 7 1 5.8672 -0.0718 -0.8431 8 6 6.8285 1.7530 -1.5228 9 7 8.1441 1.2314 -1.1440 10 16 9.4706 1.5762 -2.0735 11 8 10.5807 0.9642 -1.4313 12 8 9.1013 1.3005 -3.4177 13 7 9.7209 3.2107 -1.9832 14 6 10.5826 3.7630 -0.9349 15 6 9.0807 4.1044 -2.9515 16 1 8.4837 3.5167 -3.6488 17 6 8.1767 5.0933 -2.2128 18 6 10.1387 4.8622 -3.7115 19 1 11.1834 4.6945 -3.4952 20 6 9.7729 5.7689 -4.6838 21 7 8.5007 5.9727 -4.9475 22 14 11.0842 6.7077 -5.6263 23 1 11.4682 5.9397 -6.8379 24 1 10.5506 8.0336 -6.0291 25 1 12.2764 6.8959 -4.7612 26 6 5.7296 1.4323 0.7392 27 6 4.2631 1.4425 1.1106 28 8 3.8338 1.4492 2.2449 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 4.3713 2.4426 -1.6422 37 1 3.9391 0.7320 -1.9375 38 1 6.6752 1.6098 -2.5925 39 1 6.7778 2.8162 -1.2876 40 1 8.2381 0.6840 -0.3488 41 1 11.6100 3.8096 -1.2962 42 1 10.2426 4.7657 -0.6760 43 1 10.5363 3.1245 -0.0528 44 1 8.7741 5.6809 -1.5157 45 1 7.7000 5.7579 -2.9333 46 1 7.4115 4.5452 -1.6631 47 1 8.2433 6.6108 -5.6313 48 1 6.2721 0.7087 1.3476 49 1 6.1613 2.4265 0.8547 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365715826.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:03 Heat of formation + Delta-G solvation = -142.260315 kcal Electronic energy + Delta-G solvation = -29972.759328 eV Core-core repulsion = 25867.354535 eV Total energy + Delta-G solvation = -4105.404793 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.52304 -38.36462 -38.00182 -37.81216 -36.82124 -36.77049 -34.96311 -34.47444 -32.12256 -30.85153 -29.06277 -27.42857 -27.23348 -26.95341 -25.61712 -22.72023 -22.54368 -21.94503 -20.63866 -20.01957 -18.79363 -18.47668 -18.03021 -18.02369 -17.59602 -16.97852 -16.58743 -16.34593 -15.79440 -15.61462 -15.39259 -15.12722 -14.85131 -14.67477 -14.58866 -14.54309 -14.09862 -13.76026 -13.62772 -13.56409 -13.29119 -13.11936 -13.07087 -13.05966 -12.96036 -12.92730 -12.75833 -12.55053 -12.44620 -12.28719 -12.18225 -12.16833 -12.09052 -11.91922 -11.82977 -11.64724 -11.07656 -10.84746 -10.49628 -10.38581 -9.71054 -9.62062 -8.08508 -6.19974 -0.26837 1.43502 1.46445 1.53830 1.54182 1.99122 2.15837 2.46101 2.70955 3.20411 3.28601 3.43225 3.51030 3.78628 3.93798 4.03177 4.07841 4.15075 4.28584 4.35573 4.51946 4.55326 4.63270 4.64867 4.68250 4.74794 4.77727 4.79861 4.90442 4.91353 4.99927 5.09234 5.11142 5.14893 5.19070 5.19692 5.22958 5.30770 5.34475 5.61445 5.67160 5.77486 5.94796 6.10830 6.16875 6.26407 6.37669 6.87143 7.13434 7.48500 8.95110 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013842 B = 0.002874 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.381570 B = 9740.243021 C =10745.585906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.135 4.135 3 C 0.119 3.881 4 N -0.616 5.616 5 C 0.103 3.897 6 C -0.092 4.092 7 H 0.116 0.884 8 C 0.124 3.876 9 N -1.113 6.113 10 S 2.798 3.202 11 O -1.013 7.013 12 O -1.013 7.013 13 N -0.998 5.998 14 C 0.105 3.895 15 C 0.273 3.727 16 H 0.034 0.966 17 C -0.138 4.138 18 C -0.538 4.538 19 H 0.052 0.948 20 C 0.022 3.978 21 N -0.909 5.909 22 Si 0.947 3.053 23 H -0.283 1.283 24 H -0.280 1.280 25 H -0.271 1.271 26 C -0.149 4.149 27 C 0.509 3.491 28 O -0.584 6.584 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.043 0.957 34 H 0.066 0.934 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.425 0.575 41 H 0.037 0.963 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.038 0.962 45 H 0.066 0.934 46 H 0.045 0.955 47 H 0.264 0.736 48 H 0.115 0.885 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.467 -9.139 9.235 18.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C -0.002 4.002 4 N -0.348 5.348 5 C -0.020 4.020 6 C -0.112 4.112 7 H 0.134 0.866 8 C -0.002 4.002 9 N -0.876 5.876 10 S 2.807 3.193 11 O -0.997 6.997 12 O -0.997 6.997 13 N -0.840 5.840 14 C -0.041 4.041 15 C 0.169 3.831 16 H 0.051 0.949 17 C -0.197 4.197 18 C -0.578 4.578 19 H 0.070 0.930 20 C -0.179 4.179 21 N -0.549 5.549 22 Si 0.774 3.226 23 H -0.210 1.210 24 H -0.205 1.205 25 H -0.195 1.195 26 C -0.189 4.189 27 C 0.299 3.701 28 O -0.465 6.465 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.121 0.879 36 H 0.106 0.894 37 H 0.124 0.876 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.261 0.739 41 H 0.055 0.945 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.057 0.943 45 H 0.085 0.915 46 H 0.064 0.936 47 H 0.073 0.927 48 H 0.133 0.867 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -12.381 -9.534 9.018 18.042 hybrid contribution 0.597 0.712 -0.143 0.940 sum -11.784 -8.822 8.875 17.189 Atomic orbital electron populations 1.21680 0.93870 1.02511 1.02439 1.21843 0.97216 0.96331 1.01946 1.21597 0.77287 0.97721 1.03642 1.48464 1.06835 1.72092 1.07378 1.22294 0.88828 1.03971 0.86884 1.22253 0.93278 1.02408 0.93251 0.86635 1.21413 0.80641 0.98229 0.99958 1.55624 1.21439 1.66928 1.43629 1.01173 0.72834 0.72566 0.72741 1.93526 1.51884 1.76695 1.77558 1.93550 1.84337 1.84286 1.37498 1.57581 1.60419 1.25005 1.40955 1.21300 0.93299 1.00765 0.88716 1.18422 0.91396 0.88025 0.85300 0.94872 1.21978 0.98308 1.00030 0.99433 1.21672 0.93601 1.22893 1.19618 0.93003 1.25521 0.97157 0.97631 0.97544 1.69939 1.15978 1.36075 1.32860 0.85724 0.79850 0.78115 0.78931 1.20955 1.20510 1.19542 1.22512 0.92889 1.06070 0.97422 1.21396 0.90576 0.74171 0.84005 1.90687 1.79724 1.53010 1.23092 0.91241 0.91935 0.92901 0.90753 0.93832 0.91590 0.87923 0.89407 0.87614 0.90248 0.90473 0.73853 0.94469 0.90485 0.90135 0.94321 0.91496 0.93572 0.92696 0.86708 0.86707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.91 71.98 0.71 -0.88 16 2 C -0.13 -1.85 6.26 30.59 0.19 -1.66 16 3 C 0.12 1.81 5.93 86.38 0.51 2.32 16 4 N -0.62 -10.75 2.93 -817.98 -2.40 -13.15 16 5 C 0.10 1.36 6.91 86.83 0.60 1.96 16 6 C -0.09 -1.29 3.21 -9.74 -0.03 -1.32 16 7 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 8 C 0.12 2.47 5.55 86.38 0.48 2.95 16 9 N -1.11 -25.05 6.01 -187.48 -1.13 -26.18 16 10 S 2.80 97.00 6.09 -56.49 -0.34 96.66 16 11 O -1.01 -38.13 17.21 -128.00 -2.20 -40.33 16 12 O -1.01 -43.63 16.17 -128.00 -2.07 -45.70 16 13 N -1.00 -37.34 3.12 -520.42 -1.62 -38.96 16 14 C 0.10 3.37 9.53 127.76 1.22 4.59 16 15 C 0.27 12.28 2.62 44.25 0.12 12.39 16 16 H 0.03 1.67 6.91 -2.39 -0.02 1.66 16 17 C -0.14 -5.55 8.95 71.98 0.64 -4.90 16 18 C -0.54 -27.94 8.37 25.60 0.21 -27.72 16 19 H 0.05 2.72 7.65 -2.91 -0.02 2.70 16 20 C 0.02 1.13 5.30 84.65 0.45 1.58 16 21 N -0.91 -48.54 11.32 21.45 0.24 -48.30 16 22 Si 0.95 42.20 29.54 68.60 2.03 44.23 16 23 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 24 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 25 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 26 C -0.15 -2.41 6.24 30.58 0.19 -2.22 16 27 C 0.51 11.51 8.02 87.90 0.71 12.21 16 28 O -0.58 -18.40 17.59 -3.04 -0.05 -18.46 16 29 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.07 1.22 7.92 -2.39 -0.02 1.20 16 35 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.09 1.13 7.89 -2.39 -0.02 1.12 16 37 H 0.11 1.01 8.14 -2.38 -0.02 0.99 16 38 H 0.08 1.79 7.75 -2.38 -0.02 1.77 16 39 H 0.08 1.57 5.97 -2.38 -0.01 1.56 16 40 H 0.43 7.09 8.53 -96.74 -0.83 6.26 16 41 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.08 2.38 6.43 -2.39 -0.02 2.36 16 43 H 0.08 2.06 7.79 -2.39 -0.02 2.04 16 44 H 0.04 1.49 6.66 -2.39 -0.02 1.47 16 45 H 0.07 3.09 6.07 -2.39 -0.01 3.07 16 46 H 0.05 1.49 6.18 -2.39 -0.01 1.47 16 47 H 0.26 13.46 8.31 -92.71 -0.77 12.69 16 48 H 0.11 1.59 8.14 -2.38 -0.02 1.57 16 49 H 0.11 1.81 7.76 -2.39 -0.02 1.80 16 Total: -1.00 -73.16 401.37 -1.42 -74.58 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 0.12 Total: 16.30 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: 6.00 Total: -0.70 kcal Atomic # 7 Polarization: -121.68 SS G_CDS: -4.91 Total: -126.58 kcal Atomic # 8 Polarization: -100.16 SS G_CDS: -4.33 Total: -104.49 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Atomic # 16 Polarization: 97.00 SS G_CDS: -0.34 Total: 96.66 kcal Total: -73.16 -1.42 -74.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365715826.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.678 kcal (2) G-P(sol) polarization free energy of solvation -73.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds