Wall clock time and date at job start Wed Apr 1 2020 04:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47361 * 2 1 4 4 N 1.46500 * 109.46940 * 180.02562 * 3 2 1 5 5 C 1.46763 * 124.34503 * 269.94961 * 4 3 2 6 6 C 1.54484 * 105.47008 * 197.04073 * 5 4 3 7 7 H 1.09001 * 110.99649 * 216.44953 * 6 5 4 8 8 C 1.52998 * 110.97165 * 92.70499 * 6 5 4 9 9 N 1.46497 * 109.46999 * 181.16717 * 8 6 5 10 10 S 1.65604 * 119.99842 * 164.99840 * 9 8 6 11 11 O 1.42103 * 106.40360 * 311.46040 * 10 9 8 12 12 O 1.42101 * 106.40002 * 178.53769 * 10 9 8 13 13 N 1.65603 * 107.21689 * 64.99780 * 10 9 8 14 14 C 1.46499 * 119.99954 * 269.99863 * 13 10 9 15 15 C 1.46506 * 120.00110 * 90.00259 * 13 10 9 16 16 H 1.08998 * 109.46566 * 359.97438 * 15 13 10 17 17 C 1.52997 * 109.47289 * 119.99604 * 15 13 10 18 18 C 1.50697 * 109.47015 * 240.00062 * 15 13 10 19 19 H 1.07998 * 120.00039 * 359.97438 * 18 15 13 20 20 C 1.37880 * 119.99815 * 179.97438 * 18 15 13 21 21 N 1.31508 * 119.99915 * 359.97438 * 20 18 15 22 22 Si 1.86805 * 119.99777 * 179.97438 * 20 18 15 23 23 H 1.48501 * 109.47152 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47204 * 119.99883 * 22 20 18 25 25 H 1.48496 * 109.47191 * 240.00215 * 22 20 18 26 26 C 1.54626 * 101.76535 * 334.58300 * 6 5 4 27 27 C 1.34415 * 124.35402 * 89.97289 * 4 3 2 28 28 O 1.21286 * 124.93841 * 359.60910 * 27 4 3 29 29 H 1.09002 * 109.46894 * 59.99801 * 1 2 3 30 30 H 1.08996 * 109.47366 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46715 * 300.00055 * 1 2 3 32 32 H 1.09003 * 109.46715 * 239.99944 * 2 1 3 33 33 H 1.09002 * 109.46894 * 120.00199 * 2 1 3 34 34 H 1.08991 * 109.47107 * 59.99887 * 3 2 1 35 35 H 1.09002 * 109.46590 * 300.00262 * 3 2 1 36 36 H 1.08997 * 110.25069 * 78.03869 * 5 4 3 37 37 H 1.09003 * 110.24665 * 316.03952 * 5 4 3 38 38 H 1.08997 * 109.47473 * 61.16126 * 8 6 5 39 39 H 1.09002 * 109.46854 * 301.16696 * 8 6 5 40 40 H 0.96995 * 120.00278 * 344.99120 * 9 8 6 41 41 H 1.09000 * 109.46842 * 270.00029 * 14 13 10 42 42 H 1.08994 * 109.47173 * 30.00563 * 14 13 10 43 43 H 1.08998 * 109.46730 * 150.00596 * 14 13 10 44 44 H 1.09002 * 109.47153 * 179.97438 * 17 15 13 45 45 H 1.09001 * 109.46832 * 60.00146 * 17 15 13 46 46 H 1.09004 * 109.47261 * 300.00128 * 17 15 13 47 47 H 0.97001 * 119.99839 * 180.02562 * 21 20 18 48 48 H 1.08996 * 110.48706 * 143.47916 * 26 6 5 49 49 H 1.09006 * 110.48601 * 265.99232 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.3336 1.4432 1.2108 6 6 5.7412 1.8791 0.7470 7 1 6.5163 1.3477 1.2992 8 6 5.9176 3.3929 0.8810 9 7 7.2507 3.7731 0.4073 10 16 7.5929 5.3608 0.0838 11 8 6.5292 5.8438 -0.7251 12 8 8.9556 5.4039 -0.3169 13 7 7.5008 6.1840 1.5178 14 6 6.2285 6.7714 1.9448 15 6 8.6917 6.3249 2.3594 16 1 9.5352 5.8267 1.8815 17 6 9.0133 7.8094 2.5436 18 6 8.4337 5.6961 3.7043 19 1 7.4780 5.2377 3.9117 20 6 9.4176 5.7060 4.6701 21 7 10.5815 6.2637 4.4174 22 14 9.0975 4.9271 6.3376 23 1 7.7202 4.3727 6.3687 24 1 10.0766 3.8351 6.5700 25 1 9.2408 5.9549 7.3998 26 6 5.7296 1.4527 -0.7393 27 6 4.2631 1.4419 -1.1106 28 8 3.8338 1.4348 -2.2449 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6768 1.9563 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 4.3716 0.4431 1.6426 37 1 3.9390 2.1537 1.9372 38 1 5.8079 3.6804 1.9267 39 1 5.1609 3.9012 0.2833 40 1 7.9329 3.0949 0.2831 41 1 6.1530 7.7902 1.5648 42 1 5.4038 6.1756 1.5536 43 1 6.1821 6.7854 3.0337 44 1 9.8991 7.9142 3.1701 45 1 8.1696 8.3072 3.0216 46 1 9.2000 8.2642 1.5707 47 1 11.2738 6.2704 5.0968 48 1 6.2720 2.1761 -1.3479 49 1 6.1615 0.4585 -0.8544 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365715827.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:07 Heat of formation + Delta-G solvation = -119.139258 kcal Electronic energy + Delta-G solvation = -30127.843189 eV Core-core repulsion = 26023.441000 eV Total energy + Delta-G solvation = -4104.402189 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.73970 -37.11351 -36.66987 -36.18685 -35.90525 -35.27383 -34.04993 -32.64852 -31.28097 -29.12411 -28.19271 -26.67906 -25.55982 -25.22816 -25.00470 -22.11970 -21.15756 -20.78472 -19.68181 -18.79100 -17.29061 -17.12854 -16.89084 -16.44191 -16.32958 -15.82528 -15.69546 -15.02897 -14.84094 -14.46837 -14.35691 -13.96480 -13.71278 -13.52418 -13.28844 -13.25584 -13.02146 -12.76962 -12.49363 -12.40529 -12.07369 -11.96508 -11.83585 -11.78817 -11.66189 -11.54431 -11.44719 -11.39645 -11.25806 -11.07772 -11.03018 -10.96169 -10.91128 -10.45260 -10.25720 -10.12947 -9.88171 -9.42596 -9.18134 -8.93131 -8.53659 -8.00879 -6.14392 -4.23147 1.21335 2.47371 2.78473 3.18715 3.27032 3.28572 3.43692 4.05860 4.14942 4.26015 4.30019 4.40907 4.60401 4.64180 4.74463 4.92121 4.98299 5.11733 5.16330 5.19089 5.22747 5.26885 5.32945 5.35751 5.46231 5.54142 5.59207 5.67422 5.73502 5.77112 5.85431 5.90481 6.04584 6.12615 6.30394 6.34734 6.61655 6.84210 6.84864 6.91904 7.07999 7.17830 7.48470 7.58202 7.74106 8.00754 8.03860 8.21228 8.79836 9.43228 10.90674 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012792 B = 0.003184 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.388833 B = 8792.383857 C = 9985.988830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.141 4.141 3 C 0.125 3.875 4 N -0.621 5.621 5 C 0.109 3.891 6 C -0.107 4.107 7 H 0.110 0.890 8 C 0.129 3.871 9 N -1.128 6.128 10 S 2.782 3.218 11 O -0.997 6.997 12 O -0.980 6.980 13 N -0.990 5.990 14 C 0.106 3.894 15 C 0.267 3.733 16 H 0.059 0.941 17 C -0.145 4.145 18 C -0.525 4.525 19 H 0.063 0.937 20 C 0.064 3.936 21 N -0.886 5.886 22 Si 0.897 3.103 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.284 1.284 26 C -0.155 4.155 27 C 0.519 3.481 28 O -0.533 6.533 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.414 0.586 41 H 0.043 0.957 42 H 0.048 0.952 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.032 0.968 46 H 0.012 0.988 47 H 0.263 0.737 48 H 0.108 0.892 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.351 -11.056 -2.966 18.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.179 4.179 3 C 0.003 3.997 4 N -0.356 5.356 5 C -0.015 4.015 6 C -0.127 4.127 7 H 0.128 0.872 8 C 0.003 3.997 9 N -0.886 5.886 10 S 2.791 3.209 11 O -0.980 6.980 12 O -0.964 6.964 13 N -0.832 5.832 14 C -0.041 4.041 15 C 0.165 3.835 16 H 0.077 0.923 17 C -0.205 4.205 18 C -0.564 4.564 19 H 0.081 0.919 20 C -0.139 4.139 21 N -0.524 5.524 22 Si 0.725 3.275 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.195 4.195 27 C 0.307 3.693 28 O -0.409 6.409 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.247 0.753 41 H 0.061 0.939 42 H 0.066 0.934 43 H 0.098 0.902 44 H 0.111 0.889 45 H 0.051 0.949 46 H 0.031 0.969 47 H 0.073 0.927 48 H 0.126 0.874 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -14.425 -10.489 -4.323 18.352 hybrid contribution 0.117 -0.885 1.515 1.758 sum -14.309 -11.374 -2.809 18.493 Atomic orbital electron populations 1.21695 0.95000 1.02000 1.02065 1.21911 0.96274 0.97191 1.02559 1.21455 0.77907 0.96994 1.03363 1.48319 1.06162 1.73749 1.07350 1.22121 0.89765 1.02193 0.87434 1.22400 0.97546 0.96707 0.96016 0.87201 1.21191 0.84133 0.94153 1.00272 1.56031 1.19640 1.28157 1.84816 1.01833 0.72807 0.72734 0.73567 1.93554 1.58065 1.79558 1.66859 1.93600 1.34853 1.86146 1.81815 1.57706 1.17518 1.67472 1.40547 1.21200 0.83551 0.97129 1.02189 1.18734 0.80900 0.94392 0.89511 0.92334 1.22055 1.02662 0.97086 0.98669 1.21389 1.00147 1.37230 0.97646 0.91870 1.24937 0.95011 0.95292 0.98671 1.69890 1.04354 1.43741 1.34414 0.86479 0.78171 0.79028 0.83855 1.19843 1.21022 1.21039 1.22472 0.94774 1.04898 0.97369 1.20932 0.89326 0.74696 0.84305 1.90720 1.78759 1.50219 1.21207 0.92436 0.92452 0.92489 0.91647 0.91754 0.90205 0.89991 0.90478 0.89626 0.90588 0.90807 0.75324 0.93859 0.93373 0.90167 0.88931 0.94891 0.96873 0.92670 0.87398 0.87519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.55 16 2 C -0.14 -1.05 6.26 -26.73 -0.17 -1.22 16 3 C 0.12 1.06 5.93 -4.04 -0.02 1.03 16 4 N -0.62 -6.08 2.93 -172.42 -0.51 -6.58 16 5 C 0.11 0.80 6.90 -3.12 -0.02 0.78 16 6 C -0.11 -0.92 3.22 -88.99 -0.29 -1.21 16 7 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 8 C 0.13 1.50 5.59 -4.04 -0.02 1.48 16 9 N -1.13 -15.91 5.53 -10.62 -0.06 -15.97 16 10 S 2.78 52.12 6.10 -107.50 -0.66 51.47 16 11 O -1.00 -20.08 16.68 -57.17 -0.95 -21.03 16 12 O -0.98 -21.69 16.70 -57.17 -0.95 -22.64 16 13 N -0.99 -19.47 3.12 -115.86 -0.36 -19.83 16 14 C 0.11 1.78 9.28 59.85 0.56 2.34 16 15 C 0.27 6.27 2.62 -69.08 -0.18 6.09 16 16 H 0.06 1.53 6.91 -51.93 -0.36 1.17 16 17 C -0.14 -3.38 8.97 37.16 0.33 -3.04 16 18 C -0.52 -12.73 7.99 -34.44 -0.28 -13.01 16 19 H 0.06 1.47 7.33 -52.49 -0.38 1.08 16 20 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 21 N -0.89 -23.63 11.32 55.43 0.63 -23.00 16 22 Si 0.90 19.44 29.54 -169.99 -5.02 14.42 16 23 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 C -0.16 -1.55 6.34 -26.75 -0.17 -1.72 16 27 C 0.52 6.59 8.02 -10.86 -0.09 6.50 16 28 O -0.53 -8.92 17.59 5.55 0.10 -8.82 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.81 7.93 -51.93 -0.41 0.40 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.09 0.55 7.91 -51.93 -0.41 0.14 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.93 7.75 -51.93 -0.40 0.53 16 40 H 0.41 5.06 8.65 -34.47 -0.30 4.76 16 41 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.05 0.69 7.79 -51.93 -0.40 0.28 16 43 H 0.08 1.36 7.02 -51.93 -0.36 0.99 16 44 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 45 H 0.03 0.71 7.67 -51.93 -0.40 0.31 16 46 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 48 H 0.11 1.22 7.52 -51.93 -0.39 0.83 16 49 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 405.75 15.07 6.11 6.11 Total: -1.00 -33.55 405.75 -10.09 -43.64 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -8.35 Total: 3.27 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -0.07 Total: -1.03 kcal Atomic # 7 Polarization: -65.09 SS G_CDS: -0.30 Total: -65.38 kcal Atomic # 8 Polarization: -50.69 SS G_CDS: -1.81 Total: -52.50 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.42 kcal Atomic # 16 Polarization: 52.12 SS G_CDS: -0.66 Total: 51.47 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.55 -10.09 -43.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365715827.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.499 kcal (2) G-P(sol) polarization free energy of solvation -33.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds