Wall clock time and date at job start Wed Apr 1 2020 04:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47361 * 2 1 4 4 N 1.46500 * 109.46940 * 180.02562 * 3 2 1 5 5 C 1.46763 * 124.34503 * 269.94961 * 4 3 2 6 6 C 1.54484 * 105.47008 * 197.04073 * 5 4 3 7 7 H 1.09001 * 110.99649 * 216.44953 * 6 5 4 8 8 C 1.52998 * 110.97165 * 92.70499 * 6 5 4 9 9 N 1.46497 * 109.46999 * 181.16717 * 8 6 5 10 10 S 1.65604 * 119.99842 * 164.99840 * 9 8 6 11 11 O 1.42103 * 106.40360 * 311.46040 * 10 9 8 12 12 O 1.42101 * 106.40002 * 178.53769 * 10 9 8 13 13 N 1.65603 * 107.21689 * 64.99780 * 10 9 8 14 14 C 1.46499 * 119.99954 * 269.99863 * 13 10 9 15 15 C 1.46506 * 120.00110 * 90.00259 * 13 10 9 16 16 H 1.08998 * 109.46566 * 359.97438 * 15 13 10 17 17 C 1.52997 * 109.47289 * 119.99604 * 15 13 10 18 18 C 1.50697 * 109.47015 * 240.00062 * 15 13 10 19 19 H 1.07998 * 120.00039 * 359.97438 * 18 15 13 20 20 C 1.37880 * 119.99815 * 179.97438 * 18 15 13 21 21 N 1.31508 * 119.99915 * 359.97438 * 20 18 15 22 22 Si 1.86805 * 119.99777 * 179.97438 * 20 18 15 23 23 H 1.48501 * 109.47152 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47204 * 119.99883 * 22 20 18 25 25 H 1.48496 * 109.47191 * 240.00215 * 22 20 18 26 26 C 1.54626 * 101.76535 * 334.58300 * 6 5 4 27 27 C 1.34415 * 124.35402 * 89.97289 * 4 3 2 28 28 O 1.21286 * 124.93841 * 359.60910 * 27 4 3 29 29 H 1.09002 * 109.46894 * 59.99801 * 1 2 3 30 30 H 1.08996 * 109.47366 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46715 * 300.00055 * 1 2 3 32 32 H 1.09003 * 109.46715 * 239.99944 * 2 1 3 33 33 H 1.09002 * 109.46894 * 120.00199 * 2 1 3 34 34 H 1.08991 * 109.47107 * 59.99887 * 3 2 1 35 35 H 1.09002 * 109.46590 * 300.00262 * 3 2 1 36 36 H 1.08997 * 110.25069 * 78.03869 * 5 4 3 37 37 H 1.09003 * 110.24665 * 316.03952 * 5 4 3 38 38 H 1.08997 * 109.47473 * 61.16126 * 8 6 5 39 39 H 1.09002 * 109.46854 * 301.16696 * 8 6 5 40 40 H 0.96995 * 120.00278 * 344.99120 * 9 8 6 41 41 H 1.09000 * 109.46842 * 270.00029 * 14 13 10 42 42 H 1.08994 * 109.47173 * 30.00563 * 14 13 10 43 43 H 1.08998 * 109.46730 * 150.00596 * 14 13 10 44 44 H 1.09002 * 109.47153 * 179.97438 * 17 15 13 45 45 H 1.09001 * 109.46832 * 60.00146 * 17 15 13 46 46 H 1.09004 * 109.47261 * 300.00128 * 17 15 13 47 47 H 0.97001 * 119.99839 * 180.02562 * 21 20 18 48 48 H 1.08996 * 110.48706 * 143.47916 * 26 6 5 49 49 H 1.09006 * 110.48601 * 265.99232 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.3336 1.4432 1.2108 6 6 5.7412 1.8791 0.7470 7 1 6.5163 1.3477 1.2992 8 6 5.9176 3.3929 0.8810 9 7 7.2507 3.7731 0.4073 10 16 7.5929 5.3608 0.0838 11 8 6.5292 5.8438 -0.7251 12 8 8.9556 5.4039 -0.3169 13 7 7.5008 6.1840 1.5178 14 6 6.2285 6.7714 1.9448 15 6 8.6917 6.3249 2.3594 16 1 9.5352 5.8267 1.8815 17 6 9.0133 7.8094 2.5436 18 6 8.4337 5.6961 3.7043 19 1 7.4780 5.2377 3.9117 20 6 9.4176 5.7060 4.6701 21 7 10.5815 6.2637 4.4174 22 14 9.0975 4.9271 6.3376 23 1 7.7202 4.3727 6.3687 24 1 10.0766 3.8351 6.5700 25 1 9.2408 5.9549 7.3998 26 6 5.7296 1.4527 -0.7393 27 6 4.2631 1.4419 -1.1106 28 8 3.8338 1.4348 -2.2449 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6768 1.9563 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 4.3716 0.4431 1.6426 37 1 3.9390 2.1537 1.9372 38 1 5.8079 3.6804 1.9267 39 1 5.1609 3.9012 0.2833 40 1 7.9329 3.0949 0.2831 41 1 6.1530 7.7902 1.5648 42 1 5.4038 6.1756 1.5536 43 1 6.1821 6.7854 3.0337 44 1 9.8991 7.9142 3.1701 45 1 8.1696 8.3072 3.0216 46 1 9.2000 8.2642 1.5707 47 1 11.2738 6.2704 5.0968 48 1 6.2720 2.1761 -1.3479 49 1 6.1615 0.4585 -0.8544 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365715827.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:06 Heat of formation + Delta-G solvation = -143.391831 kcal Electronic energy + Delta-G solvation = -30128.894860 eV Core-core repulsion = 26023.441000 eV Total energy + Delta-G solvation = -4105.453860 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.56931 -38.37055 -38.02637 -37.82687 -36.88995 -36.73342 -34.91747 -34.45714 -32.05850 -30.89401 -29.01269 -27.37703 -27.20099 -26.95721 -25.85642 -22.74972 -22.58843 -21.89456 -20.62363 -20.11923 -18.75088 -18.41810 -18.22688 -17.77494 -17.52278 -17.05448 -16.57824 -16.51817 -15.84400 -15.53195 -15.36281 -15.10921 -14.86476 -14.65543 -14.50206 -14.44238 -14.12944 -13.86233 -13.69193 -13.41675 -13.30157 -13.17663 -13.12500 -13.06971 -12.97480 -12.94704 -12.72256 -12.63309 -12.55931 -12.27290 -12.23033 -12.12079 -12.10031 -11.90660 -11.81216 -11.63069 -11.14252 -10.83962 -10.46142 -10.39868 -9.70521 -9.62540 -8.03529 -6.18408 -0.27132 1.50431 1.53473 1.54254 1.63144 2.01894 2.09261 2.51169 2.65507 3.25823 3.37645 3.41432 3.52589 3.70467 3.91924 4.03344 4.07603 4.12812 4.36400 4.39957 4.47542 4.55161 4.64391 4.66890 4.72412 4.73228 4.76380 4.82475 4.87428 4.95205 4.98686 5.00863 5.07632 5.15204 5.18894 5.20178 5.20465 5.30163 5.35916 5.64234 5.65353 5.71580 5.88495 6.10326 6.11982 6.22997 6.33714 6.91707 7.14285 7.51599 9.01481 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012792 B = 0.003184 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.388833 B = 8792.383857 C = 9985.988830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.133 4.133 3 C 0.119 3.881 4 N -0.616 5.616 5 C 0.108 3.892 6 C -0.096 4.096 7 H 0.137 0.863 8 C 0.121 3.879 9 N -1.116 6.116 10 S 2.797 3.203 11 O -1.013 7.013 12 O -1.020 7.020 13 N -0.995 5.995 14 C 0.099 3.901 15 C 0.273 3.727 16 H 0.025 0.975 17 C -0.141 4.141 18 C -0.522 4.522 19 H 0.077 0.923 20 C 0.013 3.987 21 N -0.922 5.922 22 Si 0.961 3.039 23 H -0.255 1.255 24 H -0.288 1.288 25 H -0.290 1.290 26 C -0.154 4.154 27 C 0.505 3.495 28 O -0.588 6.588 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.040 0.960 33 H 0.078 0.922 34 H 0.107 0.893 35 H 0.059 0.941 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.090 0.910 39 H 0.062 0.938 40 H 0.424 0.576 41 H 0.045 0.955 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.069 0.931 45 H 0.044 0.956 46 H 0.015 0.985 47 H 0.261 0.739 48 H 0.091 0.909 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.163 -12.706 -0.590 20.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.172 4.172 3 C -0.003 4.003 4 N -0.349 5.349 5 C -0.015 4.015 6 C -0.116 4.116 7 H 0.155 0.845 8 C -0.005 4.005 9 N -0.879 5.879 10 S 2.806 3.194 11 O -0.996 6.996 12 O -1.004 7.004 13 N -0.837 5.837 14 C -0.046 4.046 15 C 0.168 3.832 16 H 0.043 0.957 17 C -0.200 4.200 18 C -0.562 4.562 19 H 0.096 0.904 20 C -0.186 4.186 21 N -0.562 5.562 22 Si 0.787 3.213 23 H -0.178 1.178 24 H -0.214 1.214 25 H -0.217 1.217 26 C -0.194 4.194 27 C 0.294 3.706 28 O -0.469 6.469 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.125 0.875 35 H 0.077 0.923 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.108 0.892 39 H 0.081 0.919 40 H 0.259 0.741 41 H 0.064 0.936 42 H 0.093 0.907 43 H 0.100 0.900 44 H 0.087 0.913 45 H 0.063 0.937 46 H 0.034 0.966 47 H 0.071 0.929 48 H 0.109 0.891 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -16.269 -12.138 -1.915 20.388 hybrid contribution 0.624 -0.369 0.734 1.031 sum -15.646 -12.507 -1.180 20.065 Atomic orbital electron populations 1.21685 0.93976 1.02494 1.02387 1.21833 0.97123 0.96242 1.01980 1.21607 0.77332 0.97783 1.03560 1.48481 1.06828 1.72038 1.07527 1.22379 0.88228 1.04382 0.86478 1.22408 0.99444 0.94557 0.95183 0.84508 1.21468 0.82082 0.96391 1.00582 1.55625 1.21170 1.26446 1.84650 1.01164 0.71572 0.73549 0.73153 1.93533 1.58214 1.80556 1.67272 1.93541 1.37205 1.87078 1.82578 1.57567 1.17508 1.68569 1.40007 1.21403 0.82949 0.97809 1.02470 1.18408 0.81343 0.93797 0.89621 0.95735 1.21963 1.02067 0.97584 0.98416 1.21661 1.00434 1.36488 0.97589 0.90447 1.25736 0.94811 0.95915 1.02179 1.70042 1.05343 1.45314 1.35458 0.85461 0.78721 0.77744 0.79345 1.17840 1.21395 1.21655 1.22503 0.92917 1.05837 0.98139 1.21457 0.90775 0.74214 0.84167 1.90681 1.79816 1.53020 1.23423 0.93230 0.91892 0.91059 0.94117 0.90307 0.87502 0.92267 0.87568 0.87733 0.89231 0.91947 0.74052 0.93589 0.90669 0.89978 0.91261 0.93728 0.96619 0.92943 0.89083 0.85212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.91 71.98 0.71 -0.85 16 2 C -0.13 -1.78 6.26 30.59 0.19 -1.59 16 3 C 0.12 1.81 5.93 86.38 0.51 2.33 16 4 N -0.62 -10.78 2.93 -818.00 -2.40 -13.17 16 5 C 0.11 1.14 6.90 86.83 0.60 1.74 16 6 C -0.10 -1.32 3.22 -9.74 -0.03 -1.35 16 7 H 0.14 1.25 8.14 -2.39 -0.02 1.23 16 8 C 0.12 2.47 5.59 86.38 0.48 2.95 16 9 N -1.12 -29.74 5.53 -187.50 -1.04 -30.78 16 10 S 2.80 103.64 6.10 -56.49 -0.34 103.29 16 11 O -1.01 -40.24 16.68 -128.00 -2.14 -42.38 16 12 O -1.02 -45.96 16.70 -128.00 -2.14 -48.10 16 13 N -0.99 -38.15 3.12 -520.46 -1.62 -39.77 16 14 C 0.10 3.13 9.28 127.77 1.19 4.32 16 15 C 0.27 12.74 2.62 44.24 0.12 12.86 16 16 H 0.02 1.32 6.91 -2.39 -0.02 1.31 16 17 C -0.14 -6.59 8.97 71.98 0.65 -5.95 16 18 C -0.52 -24.61 7.99 25.60 0.20 -24.40 16 19 H 0.08 3.36 7.33 -2.91 -0.02 3.34 16 20 C 0.01 0.64 5.30 84.66 0.45 1.08 16 21 N -0.92 -49.59 11.32 21.45 0.24 -49.35 16 22 Si 0.96 38.68 29.54 68.60 2.03 40.70 16 23 H -0.25 -9.38 7.11 99.48 0.71 -8.68 16 24 H -0.29 -11.67 7.11 99.48 0.71 -10.96 16 25 H -0.29 -11.88 7.11 99.48 0.71 -11.17 16 26 C -0.15 -2.83 6.34 30.58 0.19 -2.63 16 27 C 0.50 12.53 8.02 87.90 0.71 13.23 16 28 O -0.59 -20.45 17.59 -3.05 -0.05 -20.50 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.06 1.18 7.93 -2.39 -0.02 1.16 16 36 H 0.11 0.63 8.14 -2.39 -0.02 0.62 16 37 H 0.10 0.79 7.91 -2.39 -0.02 0.77 16 38 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.06 1.44 7.75 -2.39 -0.02 1.42 16 40 H 0.42 9.71 8.65 -96.75 -0.84 8.87 16 41 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.07 1.94 7.79 -2.39 -0.02 1.93 16 43 H 0.08 2.56 7.02 -2.39 -0.02 2.55 16 44 H 0.07 3.59 6.07 -2.39 -0.01 3.57 16 45 H 0.04 1.92 7.67 -2.39 -0.02 1.90 16 46 H 0.01 0.67 8.14 -2.38 -0.02 0.65 16 47 H 0.26 13.46 8.31 -92.71 -0.77 12.69 16 48 H 0.09 2.00 7.52 -2.39 -0.02 1.99 16 49 H 0.13 1.75 8.14 -2.38 -0.02 1.73 16 Total: -1.00 -74.71 405.75 -1.39 -76.11 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.10 Total: 22.21 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 5.97 Total: 1.73 kcal Atomic # 7 Polarization: -128.26 SS G_CDS: -4.82 Total: -133.08 kcal Atomic # 8 Polarization: -106.65 SS G_CDS: -4.33 Total: -110.98 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.70 kcal Atomic # 16 Polarization: 103.64 SS G_CDS: -0.34 Total: 103.29 kcal Total: -74.71 -1.39 -76.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365715827.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.283 kcal (2) G-P(sol) polarization free energy of solvation -74.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds