Wall clock time and date at job start Wed Apr 1 2020 04:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47485 * 2 1 4 4 N 1.46497 * 109.47122 * 179.97438 * 3 2 1 5 5 C 1.46768 * 124.34381 * 90.00725 * 4 3 2 6 6 C 1.54487 * 105.46844 * 197.01165 * 5 4 3 7 7 H 1.08996 * 110.96729 * 92.70209 * 6 5 4 8 8 C 1.52993 * 110.96601 * 216.42535 * 6 5 4 9 9 N 1.46505 * 109.47221 * 185.00070 * 8 6 5 10 10 S 1.65598 * 120.00271 * 164.99860 * 9 8 6 11 11 O 1.42105 * 106.40322 * 178.54015 * 10 9 8 12 12 O 1.42101 * 106.40485 * 311.46077 * 10 9 8 13 13 N 1.65600 * 107.21672 * 65.00156 * 10 9 8 14 14 C 1.46512 * 119.99872 * 89.99974 * 13 10 9 15 15 C 1.46493 * 120.00234 * 270.00060 * 13 10 9 16 16 H 1.09001 * 109.46820 * 359.97438 * 15 13 10 17 17 C 1.53004 * 109.47174 * 239.99916 * 15 13 10 18 18 C 1.50703 * 109.47282 * 120.00129 * 15 13 10 19 19 H 1.07998 * 119.99842 * 359.97438 * 18 15 13 20 20 C 1.37883 * 119.99763 * 180.02562 * 18 15 13 21 21 N 1.31510 * 120.00171 * 359.97438 * 20 18 15 22 22 Si 1.86804 * 119.99647 * 179.97438 * 20 18 15 23 23 H 1.48498 * 109.46705 * 59.99879 * 22 20 18 24 24 H 1.48499 * 109.47020 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47100 * 299.99767 * 22 20 18 26 26 C 1.54619 * 101.76557 * 334.58255 * 6 5 4 27 27 C 1.34413 * 124.35463 * 269.99922 * 4 3 2 28 28 O 1.21283 * 124.94031 * 359.62849 * 27 4 3 29 29 H 1.08995 * 109.47175 * 60.00015 * 1 2 3 30 30 H 1.08998 * 109.47275 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46983 * 299.99724 * 1 2 3 32 32 H 1.09009 * 109.47223 * 239.99647 * 2 1 3 33 33 H 1.09004 * 109.47382 * 120.00553 * 2 1 3 34 34 H 1.09002 * 109.46785 * 60.00155 * 3 2 1 35 35 H 1.08995 * 109.46902 * 300.00152 * 3 2 1 36 36 H 1.09000 * 110.25007 * 78.01166 * 5 4 3 37 37 H 1.09004 * 110.24485 * 316.00872 * 5 4 3 38 38 H 1.09007 * 109.47635 * 305.00032 * 8 6 5 39 39 H 1.09006 * 109.47319 * 65.00237 * 8 6 5 40 40 H 0.97002 * 119.99450 * 345.00367 * 9 8 6 41 41 H 1.09002 * 109.46923 * 90.00006 * 14 13 10 42 42 H 1.09000 * 109.46801 * 209.99956 * 14 13 10 43 43 H 1.08996 * 109.46719 * 329.99807 * 14 13 10 44 44 H 1.09001 * 109.47203 * 299.99712 * 17 15 13 45 45 H 1.09001 * 109.46935 * 60.00256 * 17 15 13 46 46 H 1.09001 * 109.47124 * 179.97438 * 17 15 13 47 47 H 0.96999 * 119.99776 * 180.02562 * 21 20 18 48 48 H 1.09007 * 110.48907 * 143.47513 * 26 6 5 49 49 H 1.09001 * 110.48711 * 265.98708 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.3336 1.4423 -1.2108 6 6 5.7413 1.0066 -0.7472 7 1 5.8672 -0.0718 -0.8431 8 6 6.8285 1.7530 -1.5228 9 7 8.1441 1.2314 -1.1440 10 16 9.4706 1.5762 -2.0735 11 8 10.5807 0.9642 -1.4313 12 8 9.1013 1.3005 -3.4177 13 7 9.7209 3.2107 -1.9832 14 6 10.5826 3.7630 -0.9349 15 6 9.0807 4.1044 -2.9515 16 1 8.4837 3.5167 -3.6488 17 6 10.1548 4.8738 -3.7231 18 6 8.1903 5.0784 -2.2239 19 1 8.1090 5.0357 -1.1478 20 6 7.4786 6.0234 -2.9321 21 7 7.5772 6.0751 -4.2425 22 14 6.3743 7.2303 -2.0301 23 1 7.1879 8.0312 -1.0805 24 1 5.7255 8.1363 -3.0117 25 1 5.3321 6.4832 -1.2812 26 6 5.7296 1.4323 0.7392 27 6 4.2631 1.4425 1.1106 28 8 3.8338 1.4492 2.2449 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 4.3713 2.4426 -1.6422 37 1 3.9391 0.7320 -1.9375 38 1 6.6752 1.6098 -2.5925 39 1 6.7778 2.8162 -1.2876 40 1 8.2381 0.6840 -0.3488 41 1 11.6100 3.8096 -1.2962 42 1 10.2426 4.7657 -0.6760 43 1 10.5363 3.1245 -0.0528 44 1 10.7522 5.4614 -3.0261 45 1 10.7988 4.1693 -4.2495 46 1 9.6785 5.5384 -4.4439 47 1 7.0767 6.7402 -4.7406 48 1 6.2721 0.7087 1.3476 49 1 6.1613 2.4265 0.8547 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365715828.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:09 Heat of formation + Delta-G solvation = -121.151094 kcal Electronic energy + Delta-G solvation = -30349.411139 eV Core-core repulsion = 26244.921710 eV Total energy + Delta-G solvation = -4104.489429 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.56922 -37.03954 -36.67720 -36.18345 -35.84426 -35.28108 -34.01696 -32.66999 -31.23864 -29.12894 -28.10728 -26.63884 -25.55913 -25.25188 -24.62994 -22.00997 -21.00467 -20.80695 -19.63758 -18.74000 -17.19064 -17.08477 -16.92097 -16.57711 -16.38862 -15.71547 -15.35700 -14.96754 -14.76458 -14.36334 -14.29809 -13.86779 -13.77252 -13.55668 -13.30891 -13.12848 -12.77489 -12.65787 -12.42811 -12.33971 -12.15841 -12.01619 -11.81692 -11.61085 -11.57299 -11.45666 -11.43594 -11.26754 -11.21452 -11.01453 -11.00392 -10.94746 -10.93566 -10.49843 -10.27310 -10.12401 -9.79533 -9.42770 -9.12318 -8.81462 -8.56108 -8.02133 -6.17541 -4.26876 1.20715 2.54926 2.88169 3.18436 3.25648 3.27372 3.47596 4.08764 4.24045 4.27298 4.35236 4.59274 4.70403 4.71692 4.91085 5.00346 5.04023 5.12455 5.17871 5.26956 5.35138 5.41096 5.44567 5.56861 5.59342 5.67063 5.73808 5.80551 5.80973 5.85067 5.97544 6.04410 6.15564 6.26545 6.34489 6.44853 6.62499 6.83520 6.84249 7.01981 7.07143 7.18343 7.47266 7.55521 7.71238 7.98202 8.11800 8.18617 8.76700 9.40086 10.86946 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009779 B = 0.003922 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.509116 B = 7137.806021 C = 8843.662497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.141 4.141 3 C 0.124 3.876 4 N -0.620 5.620 5 C 0.105 3.895 6 C -0.104 4.104 7 H 0.096 0.904 8 C 0.128 3.872 9 N -1.131 6.131 10 S 2.784 3.216 11 O -0.999 6.999 12 O -0.981 6.981 13 N -0.991 5.991 14 C 0.108 3.892 15 C 0.267 3.733 16 H 0.059 0.941 17 C -0.145 4.145 18 C -0.529 4.529 19 H 0.063 0.937 20 C 0.068 3.932 21 N -0.884 5.884 22 Si 0.892 3.108 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 C -0.153 4.153 27 C 0.519 3.481 28 O -0.539 6.539 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.408 0.592 41 H 0.042 0.958 42 H 0.079 0.921 43 H 0.050 0.950 44 H 0.032 0.968 45 H 0.012 0.988 46 H 0.092 0.908 47 H 0.265 0.735 48 H 0.101 0.899 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.665 -9.071 5.568 13.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.179 4.179 3 C 0.003 3.997 4 N -0.353 5.353 5 C -0.018 4.018 6 C -0.125 4.125 7 H 0.114 0.886 8 C 0.002 3.998 9 N -0.890 5.890 10 S 2.792 3.208 11 O -0.983 6.983 12 O -0.965 6.965 13 N -0.834 5.834 14 C -0.038 4.038 15 C 0.164 3.836 16 H 0.077 0.923 17 C -0.205 4.205 18 C -0.568 4.568 19 H 0.081 0.919 20 C -0.135 4.135 21 N -0.521 5.521 22 Si 0.720 3.280 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.202 1.202 26 C -0.193 4.193 27 C 0.308 3.692 28 O -0.416 6.416 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.240 0.760 41 H 0.060 0.940 42 H 0.098 0.902 43 H 0.068 0.932 44 H 0.051 0.949 45 H 0.031 0.969 46 H 0.110 0.890 47 H 0.075 0.925 48 H 0.119 0.881 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.547 -9.464 5.307 13.217 hybrid contribution -0.820 0.846 0.949 1.513 sum -8.367 -8.618 6.257 13.543 Atomic orbital electron populations 1.21692 0.95036 1.01974 1.02023 1.21910 0.96217 0.97195 1.02611 1.21436 0.78039 0.96978 1.03288 1.48315 1.06133 1.73418 1.07456 1.22156 0.89411 1.03098 0.87169 1.22356 0.94179 1.01584 0.94341 0.88568 1.21304 0.80250 0.98707 0.99560 1.56023 1.22548 1.67027 1.43362 1.01773 0.72502 0.73146 0.73353 1.93554 1.50656 1.76610 1.77524 1.93579 1.83822 1.84011 1.35057 1.57701 1.59811 1.24925 1.40917 1.21168 0.93205 1.00662 0.88810 1.18735 0.90449 0.88459 0.85918 0.92315 1.22056 0.97896 1.00019 1.00542 1.21330 1.25872 1.15886 0.93751 0.91900 1.24894 0.96660 0.97158 0.94788 1.69866 1.41392 1.35271 1.05610 0.86666 0.80751 0.81151 0.79432 1.20272 1.21267 1.20241 1.22502 0.94364 1.05508 0.96966 1.20965 0.89389 0.74641 0.84243 1.90703 1.78849 1.50774 1.21253 0.92475 0.92449 0.92508 0.91667 0.91671 0.90106 0.90189 0.89690 0.89931 0.89697 0.89158 0.76001 0.93961 0.90238 0.93159 0.94895 0.96909 0.88957 0.92522 0.88085 0.86877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.69 16 2 C -0.14 -1.22 6.26 -26.73 -0.17 -1.39 16 3 C 0.12 1.22 5.93 -4.04 -0.02 1.20 16 4 N -0.62 -7.05 2.93 -172.41 -0.51 -7.56 16 5 C 0.11 1.05 6.91 -3.12 -0.02 1.03 16 6 C -0.10 -1.06 3.21 -88.99 -0.29 -1.35 16 7 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 8 C 0.13 1.68 5.55 -4.04 -0.02 1.66 16 9 N -1.13 -15.30 6.01 -10.61 -0.06 -15.36 16 10 S 2.78 49.81 6.09 -107.50 -0.66 49.16 16 11 O -1.00 -19.25 17.21 -57.17 -0.98 -20.24 16 12 O -0.98 -20.68 16.17 -57.17 -0.92 -21.61 16 13 N -0.99 -18.90 3.12 -115.84 -0.36 -19.26 16 14 C 0.11 1.81 9.28 59.85 0.56 2.37 16 15 C 0.27 5.99 2.62 -69.08 -0.18 5.81 16 16 H 0.06 1.45 6.91 -51.93 -0.36 1.09 16 17 C -0.15 -3.30 8.97 37.16 0.33 -2.96 16 18 C -0.53 -12.31 7.66 -34.44 -0.26 -12.58 16 19 H 0.06 1.42 7.33 -52.49 -0.38 1.03 16 20 C 0.07 1.66 5.30 -17.82 -0.09 1.57 16 21 N -0.88 -22.68 11.32 55.43 0.63 -22.06 16 22 Si 0.89 19.16 29.54 -169.99 -5.02 14.13 16 23 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 26 C -0.15 -1.69 6.24 -26.75 -0.17 -1.86 16 27 C 0.52 7.05 8.02 -10.86 -0.09 6.96 16 28 O -0.54 -9.25 17.59 5.56 0.10 -9.15 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.88 7.92 -51.93 -0.41 0.47 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.90 7.89 -51.93 -0.41 0.49 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 1.19 7.75 -51.93 -0.40 0.79 16 39 H 0.09 1.33 7.61 -51.93 -0.40 0.93 16 40 H 0.41 4.45 8.53 -34.47 -0.29 4.15 16 41 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.08 1.36 7.02 -51.93 -0.36 0.99 16 43 H 0.05 0.73 7.79 -51.93 -0.40 0.32 16 44 H 0.03 0.70 7.67 -51.93 -0.40 0.30 16 45 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 46 H 0.09 2.28 6.07 -51.93 -0.32 1.96 16 47 H 0.26 6.56 8.31 -40.82 -0.34 6.22 16 48 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 49 H 0.11 1.30 7.76 -51.93 -0.40 0.90 16 LS Contribution 405.32 15.07 6.11 6.11 Total: -1.00 -31.47 405.32 -10.07 -41.54 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -8.33 Total: 4.54 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -0.06 Total: -0.24 kcal Atomic # 7 Polarization: -63.94 SS G_CDS: -0.30 Total: -64.24 kcal Atomic # 8 Polarization: -49.18 SS G_CDS: -1.81 Total: -50.99 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.02 Total: 14.13 kcal Atomic # 16 Polarization: 49.81 SS G_CDS: -0.66 Total: 49.16 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.47 -10.07 -41.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365715828.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.611 kcal (2) G-P(sol) polarization free energy of solvation -31.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds