Wall clock time and date at job start Wed Apr 1 2020 04:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47485 * 2 1 4 4 N 1.46497 * 109.47122 * 179.97438 * 3 2 1 5 5 C 1.46768 * 124.34381 * 90.00725 * 4 3 2 6 6 C 1.54487 * 105.46844 * 197.01165 * 5 4 3 7 7 H 1.08996 * 110.96729 * 92.70209 * 6 5 4 8 8 C 1.52993 * 110.96601 * 216.42535 * 6 5 4 9 9 N 1.46505 * 109.47221 * 185.00070 * 8 6 5 10 10 S 1.65598 * 120.00271 * 164.99860 * 9 8 6 11 11 O 1.42105 * 106.40322 * 178.54015 * 10 9 8 12 12 O 1.42101 * 106.40485 * 311.46077 * 10 9 8 13 13 N 1.65600 * 107.21672 * 65.00156 * 10 9 8 14 14 C 1.46512 * 119.99872 * 89.99974 * 13 10 9 15 15 C 1.46493 * 120.00234 * 270.00060 * 13 10 9 16 16 H 1.09001 * 109.46820 * 359.97438 * 15 13 10 17 17 C 1.53004 * 109.47174 * 239.99916 * 15 13 10 18 18 C 1.50703 * 109.47282 * 120.00129 * 15 13 10 19 19 H 1.07998 * 119.99842 * 359.97438 * 18 15 13 20 20 C 1.37883 * 119.99763 * 180.02562 * 18 15 13 21 21 N 1.31510 * 120.00171 * 359.97438 * 20 18 15 22 22 Si 1.86804 * 119.99647 * 179.97438 * 20 18 15 23 23 H 1.48498 * 109.46705 * 59.99879 * 22 20 18 24 24 H 1.48499 * 109.47020 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47100 * 299.99767 * 22 20 18 26 26 C 1.54619 * 101.76557 * 334.58255 * 6 5 4 27 27 C 1.34413 * 124.35463 * 269.99922 * 4 3 2 28 28 O 1.21283 * 124.94031 * 359.62849 * 27 4 3 29 29 H 1.08995 * 109.47175 * 60.00015 * 1 2 3 30 30 H 1.08998 * 109.47275 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46983 * 299.99724 * 1 2 3 32 32 H 1.09009 * 109.47223 * 239.99647 * 2 1 3 33 33 H 1.09004 * 109.47382 * 120.00553 * 2 1 3 34 34 H 1.09002 * 109.46785 * 60.00155 * 3 2 1 35 35 H 1.08995 * 109.46902 * 300.00152 * 3 2 1 36 36 H 1.09000 * 110.25007 * 78.01166 * 5 4 3 37 37 H 1.09004 * 110.24485 * 316.00872 * 5 4 3 38 38 H 1.09007 * 109.47635 * 305.00032 * 8 6 5 39 39 H 1.09006 * 109.47319 * 65.00237 * 8 6 5 40 40 H 0.97002 * 119.99450 * 345.00367 * 9 8 6 41 41 H 1.09002 * 109.46923 * 90.00006 * 14 13 10 42 42 H 1.09000 * 109.46801 * 209.99956 * 14 13 10 43 43 H 1.08996 * 109.46719 * 329.99807 * 14 13 10 44 44 H 1.09001 * 109.47203 * 299.99712 * 17 15 13 45 45 H 1.09001 * 109.46935 * 60.00256 * 17 15 13 46 46 H 1.09001 * 109.47124 * 179.97438 * 17 15 13 47 47 H 0.96999 * 119.99776 * 180.02562 * 21 20 18 48 48 H 1.09007 * 110.48907 * 143.47513 * 26 6 5 49 49 H 1.09001 * 110.48711 * 265.98708 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.3336 1.4423 -1.2108 6 6 5.7413 1.0066 -0.7472 7 1 5.8672 -0.0718 -0.8431 8 6 6.8285 1.7530 -1.5228 9 7 8.1441 1.2314 -1.1440 10 16 9.4706 1.5762 -2.0735 11 8 10.5807 0.9642 -1.4313 12 8 9.1013 1.3005 -3.4177 13 7 9.7209 3.2107 -1.9832 14 6 10.5826 3.7630 -0.9349 15 6 9.0807 4.1044 -2.9515 16 1 8.4837 3.5167 -3.6488 17 6 10.1548 4.8738 -3.7231 18 6 8.1903 5.0784 -2.2239 19 1 8.1090 5.0357 -1.1478 20 6 7.4786 6.0234 -2.9321 21 7 7.5772 6.0751 -4.2425 22 14 6.3743 7.2303 -2.0301 23 1 7.1879 8.0312 -1.0805 24 1 5.7255 8.1363 -3.0117 25 1 5.3321 6.4832 -1.2812 26 6 5.7296 1.4323 0.7392 27 6 4.2631 1.4425 1.1106 28 8 3.8338 1.4492 2.2449 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 4.3713 2.4426 -1.6422 37 1 3.9391 0.7320 -1.9375 38 1 6.6752 1.6098 -2.5925 39 1 6.7778 2.8162 -1.2876 40 1 8.2381 0.6840 -0.3488 41 1 11.6100 3.8096 -1.2962 42 1 10.2426 4.7657 -0.6760 43 1 10.5363 3.1245 -0.0528 44 1 10.7522 5.4614 -3.0261 45 1 10.7988 4.1693 -4.2495 46 1 9.6785 5.5384 -4.4439 47 1 7.0767 6.7402 -4.7406 48 1 6.2721 0.7087 1.3476 49 1 6.1613 2.4265 0.8547 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365715828.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:08 Heat of formation + Delta-G solvation = -142.991057 kcal Electronic energy + Delta-G solvation = -30350.358191 eV Core-core repulsion = 26244.921710 eV Total energy + Delta-G solvation = -4105.436481 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.52787 -38.34528 -37.99171 -37.80192 -36.82881 -36.76784 -34.95029 -34.44307 -32.12207 -30.85455 -29.05970 -27.43478 -27.20268 -26.93771 -25.60013 -22.72994 -22.52522 -21.93988 -20.66768 -20.06228 -18.62876 -18.37617 -18.25660 -17.98048 -17.57466 -16.97154 -16.55576 -16.34259 -15.74451 -15.60604 -15.34864 -15.12639 -14.83653 -14.73441 -14.60069 -14.38330 -14.05254 -13.67174 -13.63015 -13.59565 -13.32500 -13.15312 -13.09257 -13.07159 -12.95382 -12.93924 -12.67973 -12.64635 -12.43953 -12.29919 -12.19290 -12.16888 -12.07098 -11.92718 -11.80934 -11.66056 -11.14324 -10.85030 -10.43181 -10.36837 -9.72740 -9.60770 -8.03317 -6.16870 -0.22733 1.48361 1.52198 1.52439 1.56572 1.97036 2.13720 2.49110 2.70615 3.25734 3.29001 3.44028 3.52151 3.81458 3.93653 4.01621 4.07636 4.17834 4.31927 4.34845 4.51596 4.59981 4.63513 4.67319 4.69754 4.77280 4.81066 4.84846 4.86707 4.90961 5.00464 5.03712 5.10424 5.13168 5.17782 5.23168 5.28985 5.32798 5.33493 5.59965 5.67061 5.75868 5.90434 6.08689 6.13319 6.28475 6.36562 6.92632 7.11589 7.52739 9.00742 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009779 B = 0.003922 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.509116 B = 7137.806021 C = 8843.662497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.118 3.882 4 N -0.616 5.616 5 C 0.103 3.897 6 C -0.090 4.090 7 H 0.119 0.881 8 C 0.129 3.871 9 N -1.113 6.113 10 S 2.800 3.200 11 O -1.011 7.011 12 O -1.014 7.014 13 N -0.998 5.998 14 C 0.102 3.898 15 C 0.274 3.726 16 H 0.033 0.967 17 C -0.142 4.142 18 C -0.523 4.523 19 H 0.071 0.929 20 C 0.027 3.973 21 N -0.914 5.914 22 Si 0.946 3.054 23 H -0.277 1.277 24 H -0.293 1.293 25 H -0.269 1.269 26 C -0.149 4.149 27 C 0.509 3.491 28 O -0.583 6.583 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.044 0.956 34 H 0.065 0.935 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.108 0.892 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.424 0.576 41 H 0.047 0.953 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.040 0.960 45 H 0.016 0.984 46 H 0.069 0.931 47 H 0.262 0.738 48 H 0.118 0.882 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.221 -9.865 6.284 14.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.172 4.172 3 C -0.003 4.003 4 N -0.348 5.348 5 C -0.020 4.020 6 C -0.111 4.111 7 H 0.137 0.863 8 C 0.003 3.997 9 N -0.876 5.876 10 S 2.809 3.191 11 O -0.995 6.995 12 O -0.998 6.998 13 N -0.839 5.839 14 C -0.044 4.044 15 C 0.170 3.830 16 H 0.051 0.949 17 C -0.201 4.201 18 C -0.563 4.563 19 H 0.089 0.911 20 C -0.173 4.173 21 N -0.553 5.553 22 Si 0.773 3.227 23 H -0.203 1.203 24 H -0.219 1.219 25 H -0.194 1.194 26 C -0.189 4.189 27 C 0.299 3.701 28 O -0.464 6.464 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.118 0.882 36 H 0.098 0.902 37 H 0.126 0.874 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.260 0.740 41 H 0.066 0.934 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.059 0.941 45 H 0.036 0.964 46 H 0.088 0.912 47 H 0.072 0.928 48 H 0.136 0.864 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.087 -10.270 6.023 14.392 hybrid contribution -0.638 1.067 0.724 1.438 sum -8.725 -9.203 6.746 14.364 Atomic orbital electron populations 1.21679 0.93801 1.02588 1.02392 1.21832 0.97240 0.96043 1.02055 1.21606 0.77281 0.97967 1.03489 1.48463 1.06868 1.72081 1.07380 1.22277 0.89130 1.03638 0.86954 1.22259 0.93211 1.02405 0.93180 0.86290 1.21291 0.80567 0.98302 0.99575 1.55566 1.21621 1.66855 1.43539 1.01100 0.72670 0.72528 0.72799 1.93534 1.51782 1.76627 1.77521 1.93540 1.84384 1.84369 1.37502 1.57606 1.60315 1.24910 1.41090 1.21342 0.93007 1.01001 0.89055 1.18406 0.90149 0.88340 0.86135 0.94888 1.21973 0.97986 0.99869 1.00321 1.21541 1.25238 1.15416 0.94061 0.91133 1.25501 0.97923 0.98657 0.95214 1.69992 1.42442 1.36022 1.06834 0.85813 0.79409 0.79310 0.78214 1.20275 1.21938 1.19378 1.22507 0.92914 1.05875 0.97612 1.21390 0.90578 0.74137 0.84013 1.90674 1.79723 1.53059 1.22979 0.91328 0.91726 0.92937 0.90653 0.93674 0.91673 0.88206 0.90240 0.87352 0.90561 0.90697 0.74046 0.93422 0.90618 0.90635 0.94128 0.96448 0.91195 0.92845 0.86412 0.87259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 71.98 0.71 -1.13 16 2 C -0.13 -2.11 6.26 30.59 0.19 -1.91 16 3 C 0.12 2.17 5.93 86.38 0.51 2.68 16 4 N -0.62 -13.08 2.93 -817.98 -2.40 -15.48 16 5 C 0.10 1.81 6.91 86.83 0.60 2.41 16 6 C -0.09 -1.62 3.21 -9.74 -0.03 -1.65 16 7 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 8 C 0.13 3.16 5.55 86.38 0.48 3.64 16 9 N -1.11 -27.80 6.01 -187.48 -1.13 -28.93 16 10 S 2.80 96.63 6.09 -56.49 -0.34 96.28 16 11 O -1.01 -37.02 17.21 -128.00 -2.20 -39.23 16 12 O -1.01 -42.35 16.17 -128.00 -2.07 -44.42 16 13 N -1.00 -36.97 3.12 -520.42 -1.62 -38.60 16 14 C 0.10 3.22 9.28 127.76 1.19 4.40 16 15 C 0.27 12.23 2.62 44.25 0.12 12.34 16 16 H 0.03 1.66 6.91 -2.39 -0.02 1.64 16 17 C -0.14 -6.44 8.97 71.98 0.65 -5.79 16 18 C -0.52 -23.99 7.66 25.60 0.20 -23.79 16 19 H 0.07 3.08 7.33 -2.91 -0.02 3.06 16 20 C 0.03 1.32 5.30 84.66 0.45 1.77 16 21 N -0.91 -47.31 11.32 21.45 0.24 -47.07 16 22 Si 0.95 38.81 29.54 68.60 2.03 40.84 16 23 H -0.28 -11.32 7.11 99.48 0.71 -10.61 16 24 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 25 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 26 C -0.15 -3.00 6.24 30.58 0.19 -2.81 16 27 C 0.51 13.34 8.02 87.90 0.71 14.04 16 28 O -0.58 -20.09 17.59 -3.04 -0.05 -20.14 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.71 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.06 1.41 7.92 -2.39 -0.02 1.39 16 35 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.08 1.53 7.89 -2.39 -0.02 1.52 16 37 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 38 H 0.08 2.05 7.75 -2.38 -0.02 2.03 16 39 H 0.07 2.11 7.61 -2.38 -0.02 2.09 16 40 H 0.42 8.00 8.53 -96.74 -0.83 7.17 16 41 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.08 2.45 7.02 -2.39 -0.02 2.43 16 43 H 0.08 1.99 7.79 -2.39 -0.02 1.97 16 44 H 0.04 1.72 7.67 -2.39 -0.02 1.70 16 45 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.07 3.50 6.07 -2.39 -0.01 3.49 16 47 H 0.26 13.14 8.31 -92.71 -0.77 12.37 16 48 H 0.12 1.97 8.14 -2.38 -0.02 1.95 16 49 H 0.11 2.33 7.76 -2.39 -0.02 2.31 16 Total: -1.00 -67.45 405.32 -1.48 -68.93 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: 0.11 Total: 23.61 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: 5.96 Total: 4.20 kcal Atomic # 7 Polarization: -125.16 SS G_CDS: -4.91 Total: -130.07 kcal Atomic # 8 Polarization: -99.46 SS G_CDS: -4.33 Total: -103.79 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 2.03 Total: 40.84 kcal Atomic # 16 Polarization: 96.63 SS G_CDS: -0.34 Total: 96.28 kcal Total: -67.45 -1.48 -68.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365715828.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.062 kcal (2) G-P(sol) polarization free energy of solvation -67.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds