Wall clock time and date at job start Wed Apr 1 2020 04:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08996 * 109.50160 * 2 1 4 4 C 1.53040 * 109.49838 * 120.06923 * 2 1 3 5 5 C 1.53044 * 109.53662 * 181.34690 * 4 2 1 6 6 C 1.53191 * 109.31440 * 298.63203 * 5 4 2 7 7 N 1.46926 * 108.89109 * 54.56430 * 6 5 4 8 8 C 1.34780 * 120.62730 * 126.46248 * 7 6 5 9 9 O 1.21280 * 119.99699 * 180.02562 * 8 7 6 10 10 C 1.50691 * 120.00213 * 359.97438 * 8 7 6 11 11 C 1.53008 * 109.47282 * 179.97438 * 10 8 7 12 12 N 1.46496 * 109.47130 * 180.02562 * 11 10 8 13 13 S 1.65601 * 120.00058 * 165.00121 * 12 11 10 14 14 O 1.42098 * 106.40590 * 178.53679 * 13 12 11 15 15 O 1.42096 * 106.40115 * 311.46186 * 13 12 11 16 16 N 1.65605 * 107.21439 * 64.99812 * 13 12 11 17 17 C 1.46496 * 120.00279 * 269.99890 * 16 13 12 18 18 C 1.46495 * 119.99890 * 90.00591 * 16 13 12 19 19 C 1.50703 * 109.47634 * 94.99604 * 18 16 13 20 20 H 1.08001 * 119.99647 * 0.02562 * 19 18 16 21 21 C 1.37872 * 120.00382 * 180.02562 * 19 18 16 22 22 N 1.31523 * 119.99987 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00198 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.46925 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46837 * 119.99923 * 23 21 19 26 26 H 1.48492 * 109.47172 * 239.99981 * 23 21 19 27 27 C 1.46957 * 118.71783 * 306.64359 * 7 6 5 28 28 H 1.09002 * 109.47062 * 299.93194 * 1 2 3 29 29 H 1.09002 * 109.47288 * 59.92936 * 1 2 3 30 30 H 1.08999 * 109.47515 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.45892 * 61.32829 * 4 2 1 32 32 H 1.09000 * 109.46209 * 301.36577 * 4 2 1 33 33 H 1.09003 * 109.49852 * 178.68467 * 5 4 2 34 34 H 1.08997 * 109.49691 * 58.58900 * 5 4 2 35 35 H 1.09002 * 109.58786 * 174.42474 * 6 5 4 36 36 H 1.08996 * 109.58870 * 294.70753 * 6 5 4 37 37 H 1.08998 * 109.47452 * 300.00605 * 10 8 7 38 38 H 1.09005 * 109.46717 * 60.00766 * 10 8 7 39 39 H 1.09003 * 109.47131 * 300.00278 * 11 10 8 40 40 H 1.08995 * 109.46569 * 60.00639 * 11 10 8 41 41 H 0.96996 * 120.00150 * 345.00264 * 12 11 10 42 42 H 1.09001 * 109.47001 * 90.00398 * 17 16 13 43 43 H 1.08997 * 109.47620 * 210.00184 * 17 16 13 44 44 H 1.09002 * 109.47396 * 330.00360 * 17 16 13 45 45 H 1.09006 * 109.47275 * 214.99762 * 18 16 13 46 46 H 1.09008 * 109.47004 * 334.99556 * 18 16 13 47 47 H 0.96996 * 120.00165 * 179.97438 * 22 21 19 48 48 H 1.09001 * 109.46843 * 293.57352 * 27 7 6 49 49 H 1.08997 * 109.71602 * 173.28846 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0407 -0.7228 1.2485 5 6 3.5708 -0.6941 1.2665 6 6 4.1059 -1.4256 0.0314 7 7 3.5054 -0.8314 -1.1707 8 6 4.2822 -0.3904 -2.1800 9 8 3.7745 0.0986 -3.1669 10 6 5.7817 -0.5039 -2.0817 11 6 6.4205 0.0649 -3.3504 12 7 7.8781 -0.0460 -3.2551 13 16 8.8129 0.1391 -4.6094 14 8 10.1632 0.0111 -4.1857 15 8 8.2321 -0.6822 -5.6131 16 7 8.6297 1.7033 -5.1214 17 6 7.5686 2.0433 -6.0724 18 6 9.5290 2.7471 -4.6233 19 6 10.6626 2.9405 -5.5973 20 1 10.7084 2.3456 -6.4975 21 6 11.6412 3.8767 -5.3391 22 7 11.5852 4.6014 -4.2430 23 14 13.0467 4.1159 -6.5461 24 1 12.8795 3.1854 -7.6912 25 1 13.0409 5.5158 -7.0414 26 1 14.3366 3.8370 -5.8653 27 6 2.0419 -0.7236 -1.2495 28 1 -0.3633 0.5128 0.8906 29 1 -0.3634 0.5149 -0.8894 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6971 -1.7571 1.2353 32 1 1.6577 -0.2244 2.1390 33 1 3.9334 -1.1886 2.1676 34 1 3.9154 0.3399 1.2546 35 1 5.1901 -1.3230 -0.0128 36 1 3.8408 -2.4813 0.0886 37 1 6.1325 0.0566 -1.2151 38 1 6.0603 -1.5521 -1.9737 39 1 6.0696 -0.4960 -4.2167 40 1 6.1418 1.1130 -3.4589 41 1 8.2957 -0.2278 -2.3987 42 1 6.6629 2.3082 -5.5268 43 1 7.8852 2.8888 -6.6832 44 1 7.3681 1.1860 -6.7150 45 1 8.9777 3.6814 -4.5172 46 1 9.9294 2.4495 -3.6541 47 1 12.2739 5.2598 -4.0612 48 1 1.6062 -1.7216 -1.2979 49 1 1.7621 -0.1593 -2.1390 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365751535.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:41 Heat of formation + Delta-G solvation = -125.265541 kcal Electronic energy + Delta-G solvation = -29252.820921 eV Core-core repulsion = 25148.153076 eV Total energy + Delta-G solvation = -4104.667845 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.58776 -38.11350 -36.58303 -35.55039 -35.37187 -35.11918 -34.26511 -32.39574 -32.26332 -30.43164 -27.72180 -27.20318 -25.94856 -24.99821 -23.31579 -22.74649 -22.24320 -20.70945 -19.49132 -18.76131 -17.54393 -17.19917 -16.67311 -16.40443 -16.15356 -15.96721 -15.70474 -15.19562 -14.89061 -14.77950 -14.54536 -14.22142 -13.92183 -13.76139 -13.36382 -13.23362 -13.19283 -13.06389 -12.55358 -12.29798 -12.27038 -12.14664 -12.07008 -11.78659 -11.58865 -11.55512 -11.42778 -11.29816 -11.25765 -11.14573 -11.10184 -11.04256 -10.82730 -10.65831 -10.47369 -10.00871 -9.99919 -9.70997 -9.30044 -8.97906 -8.42141 -8.01165 -6.03809 -4.07338 1.26987 2.37909 2.62548 3.33190 3.40472 3.46156 3.55492 4.09700 4.18637 4.28590 4.36048 4.46663 4.48173 4.51843 4.61814 4.78096 4.87210 4.93023 5.02518 5.11446 5.14523 5.20917 5.25474 5.30033 5.31631 5.34419 5.40756 5.52774 5.61449 5.62966 5.68913 5.71492 5.74846 5.81207 5.92356 6.07445 6.12654 6.16798 6.39377 6.62590 7.03631 7.12824 7.29574 7.46499 7.66187 7.90443 7.94359 8.23939 8.95577 9.57718 11.04869 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020378 B = 0.002202 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.694136 B =12711.997967 C =12929.820202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 H 0.075 0.925 4 C -0.115 4.115 5 C -0.137 4.137 6 C 0.104 3.896 7 N -0.616 5.616 8 C 0.520 3.480 9 O -0.533 6.533 10 C -0.148 4.148 11 C 0.136 3.864 12 N -1.137 6.137 13 S 2.784 3.216 14 O -0.964 6.964 15 O -0.997 6.997 16 N -0.995 5.995 17 C 0.094 3.906 18 C 0.257 3.743 19 C -0.526 4.526 20 H 0.061 0.939 21 C 0.060 3.940 22 N -0.897 5.897 23 Si 0.897 3.103 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.282 1.282 27 C 0.115 3.885 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.070 0.930 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.411 0.589 42 H 0.040 0.960 43 H 0.077 0.923 44 H 0.066 0.934 45 H 0.035 0.965 46 H 0.037 0.963 47 H 0.262 0.738 48 H 0.065 0.935 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.378 -11.592 13.870 27.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 H 0.093 0.907 4 C -0.153 4.153 5 C -0.176 4.176 6 C -0.019 4.019 7 N -0.350 5.350 8 C 0.308 3.692 9 O -0.410 6.410 10 C -0.189 4.189 11 C 0.009 3.991 12 N -0.896 5.896 13 S 2.791 3.209 14 O -0.948 6.948 15 O -0.980 6.980 16 N -0.838 5.838 17 C -0.053 4.053 18 C 0.135 3.865 19 C -0.566 4.566 20 H 0.079 0.921 21 C -0.142 4.142 22 N -0.536 5.536 23 Si 0.725 3.275 24 H -0.196 1.196 25 H -0.210 1.210 26 H -0.208 1.208 27 C -0.007 4.007 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.243 0.757 42 H 0.059 0.941 43 H 0.096 0.904 44 H 0.085 0.915 45 H 0.053 0.947 46 H 0.055 0.945 47 H 0.072 0.928 48 H 0.084 0.916 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -21.104 -11.814 12.813 27.370 hybrid contribution 0.757 0.477 0.229 0.924 sum -20.347 -11.337 13.043 26.695 Atomic orbital electron populations 1.21762 0.94291 1.02056 1.02216 1.21514 0.96059 1.00278 0.94881 0.90662 1.21592 0.95148 1.00840 0.97684 1.21939 0.96275 1.01681 0.97669 1.21793 0.98762 0.97211 0.84112 1.48120 1.06826 1.61737 1.18343 1.20573 0.89243 0.77081 0.82297 1.90731 1.75540 1.43986 1.30693 1.21882 0.91747 1.04298 1.00965 1.20886 0.78937 1.01768 0.97507 1.56294 1.15883 1.89639 1.27736 1.01869 0.72799 0.73280 0.72936 1.93642 1.32714 1.86185 1.82245 1.93525 1.79730 1.66938 1.57844 1.57562 1.42724 1.27526 1.56006 1.21384 0.88930 1.02316 0.92667 1.19052 0.87216 0.85495 0.94760 1.21548 1.07887 1.20170 1.06981 0.92090 1.24942 0.98005 0.95593 0.95612 1.69933 1.34849 1.23792 1.25035 0.86447 0.82095 0.77753 0.81187 1.19635 1.21003 1.20831 1.21657 0.79190 1.00746 0.99100 0.92281 0.92251 0.92485 0.91717 0.91567 0.90444 0.91214 0.89304 0.91148 0.87996 0.88038 0.89809 0.90986 0.75677 0.94147 0.90418 0.91532 0.94713 0.94460 0.92794 0.91627 0.88828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.20 37.15 0.34 -0.39 16 2 C -0.11 -0.66 2.87 -90.50 -0.26 -0.92 16 3 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.12 -0.56 5.17 -26.69 -0.14 -0.70 16 5 C -0.14 -0.65 6.08 -26.61 -0.16 -0.82 16 6 C 0.10 0.56 6.34 -3.71 -0.02 0.54 16 7 N -0.62 -5.16 2.98 -172.75 -0.51 -5.68 16 8 C 0.52 5.79 7.70 -10.99 -0.08 5.70 16 9 O -0.53 -7.99 15.40 5.56 0.09 -7.90 16 10 C -0.15 -1.39 4.19 -27.88 -0.12 -1.50 16 11 C 0.14 1.79 5.54 -4.04 -0.02 1.76 16 12 N -1.14 -16.47 6.05 -10.61 -0.06 -16.54 16 13 S 2.78 55.56 6.10 -107.50 -0.66 54.91 16 14 O -0.96 -22.93 17.11 -57.17 -0.98 -23.90 16 15 O -1.00 -21.19 16.21 -57.17 -0.93 -22.12 16 16 N -1.00 -21.13 3.23 -123.05 -0.40 -21.52 16 17 C 0.09 1.70 10.68 59.84 0.64 2.34 16 18 C 0.26 6.52 5.08 -5.20 -0.03 6.49 16 19 C -0.53 -14.99 9.38 -34.44 -0.32 -15.32 16 20 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 21 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 22 N -0.90 -26.38 13.29 55.43 0.74 -25.64 16 23 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 24 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 27 C 0.12 0.90 5.71 -3.69 -0.02 0.88 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.09 0.39 5.93 -51.93 -0.31 0.08 16 36 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.10 0.75 7.69 -51.93 -0.40 0.35 16 38 H 0.10 0.75 7.94 -51.93 -0.41 0.34 16 39 H 0.08 1.20 7.71 -51.93 -0.40 0.80 16 40 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 41 H 0.41 4.90 8.65 -34.47 -0.30 4.61 16 42 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.08 1.42 8.07 -51.93 -0.42 1.00 16 44 H 0.07 1.15 7.02 -51.93 -0.36 0.79 16 45 H 0.03 0.90 8.11 -51.93 -0.42 0.48 16 46 H 0.04 0.99 7.61 -51.92 -0.40 0.60 16 47 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 48 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.09 0.91 7.02 -51.93 -0.36 0.54 16 LS Contribution 404.15 15.07 6.09 6.09 Total: -1.00 -36.52 404.15 -10.34 -46.85 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -8.40 Total: -1.35 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -0.29 Total: -0.30 kcal Atomic # 7 Polarization: -69.14 SS G_CDS: -0.24 Total: -69.38 kcal Atomic # 8 Polarization: -52.10 SS G_CDS: -1.82 Total: -53.92 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Atomic # 16 Polarization: 55.56 SS G_CDS: -0.66 Total: 54.91 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.52 -10.34 -46.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365751535.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.412 kcal (2) G-P(sol) polarization free energy of solvation -36.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds