Wall clock time and date at job start Wed Apr 1 2020 04:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08996 * 109.50160 * 2 1 4 4 C 1.53040 * 109.49838 * 120.06923 * 2 1 3 5 5 C 1.53044 * 109.53662 * 181.34690 * 4 2 1 6 6 C 1.53191 * 109.31440 * 298.63203 * 5 4 2 7 7 N 1.46926 * 108.89109 * 54.56430 * 6 5 4 8 8 C 1.34780 * 120.62730 * 126.46248 * 7 6 5 9 9 O 1.21280 * 119.99699 * 180.02562 * 8 7 6 10 10 C 1.50691 * 120.00213 * 359.97438 * 8 7 6 11 11 C 1.53008 * 109.47282 * 179.97438 * 10 8 7 12 12 N 1.46496 * 109.47130 * 180.02562 * 11 10 8 13 13 S 1.65601 * 120.00058 * 165.00121 * 12 11 10 14 14 O 1.42098 * 106.40590 * 178.53679 * 13 12 11 15 15 O 1.42096 * 106.40115 * 311.46186 * 13 12 11 16 16 N 1.65605 * 107.21439 * 64.99812 * 13 12 11 17 17 C 1.46496 * 120.00279 * 269.99890 * 16 13 12 18 18 C 1.46495 * 119.99890 * 90.00591 * 16 13 12 19 19 C 1.50703 * 109.47634 * 94.99604 * 18 16 13 20 20 H 1.08001 * 119.99647 * 0.02562 * 19 18 16 21 21 C 1.37872 * 120.00382 * 180.02562 * 19 18 16 22 22 N 1.31523 * 119.99987 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00198 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.46925 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46837 * 119.99923 * 23 21 19 26 26 H 1.48492 * 109.47172 * 239.99981 * 23 21 19 27 27 C 1.46957 * 118.71783 * 306.64359 * 7 6 5 28 28 H 1.09002 * 109.47062 * 299.93194 * 1 2 3 29 29 H 1.09002 * 109.47288 * 59.92936 * 1 2 3 30 30 H 1.08999 * 109.47515 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.45892 * 61.32829 * 4 2 1 32 32 H 1.09000 * 109.46209 * 301.36577 * 4 2 1 33 33 H 1.09003 * 109.49852 * 178.68467 * 5 4 2 34 34 H 1.08997 * 109.49691 * 58.58900 * 5 4 2 35 35 H 1.09002 * 109.58786 * 174.42474 * 6 5 4 36 36 H 1.08996 * 109.58870 * 294.70753 * 6 5 4 37 37 H 1.08998 * 109.47452 * 300.00605 * 10 8 7 38 38 H 1.09005 * 109.46717 * 60.00766 * 10 8 7 39 39 H 1.09003 * 109.47131 * 300.00278 * 11 10 8 40 40 H 1.08995 * 109.46569 * 60.00639 * 11 10 8 41 41 H 0.96996 * 120.00150 * 345.00264 * 12 11 10 42 42 H 1.09001 * 109.47001 * 90.00398 * 17 16 13 43 43 H 1.08997 * 109.47620 * 210.00184 * 17 16 13 44 44 H 1.09002 * 109.47396 * 330.00360 * 17 16 13 45 45 H 1.09006 * 109.47275 * 214.99762 * 18 16 13 46 46 H 1.09008 * 109.47004 * 334.99556 * 18 16 13 47 47 H 0.96996 * 120.00165 * 179.97438 * 22 21 19 48 48 H 1.09001 * 109.46843 * 293.57352 * 27 7 6 49 49 H 1.08997 * 109.71602 * 173.28846 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0407 -0.7228 1.2485 5 6 3.5708 -0.6941 1.2665 6 6 4.1059 -1.4256 0.0314 7 7 3.5054 -0.8314 -1.1707 8 6 4.2822 -0.3904 -2.1800 9 8 3.7745 0.0986 -3.1669 10 6 5.7817 -0.5039 -2.0817 11 6 6.4205 0.0649 -3.3504 12 7 7.8781 -0.0460 -3.2551 13 16 8.8129 0.1391 -4.6094 14 8 10.1632 0.0111 -4.1857 15 8 8.2321 -0.6822 -5.6131 16 7 8.6297 1.7033 -5.1214 17 6 7.5686 2.0433 -6.0724 18 6 9.5290 2.7471 -4.6233 19 6 10.6626 2.9405 -5.5973 20 1 10.7084 2.3456 -6.4975 21 6 11.6412 3.8767 -5.3391 22 7 11.5852 4.6014 -4.2430 23 14 13.0467 4.1159 -6.5461 24 1 12.8795 3.1854 -7.6912 25 1 13.0409 5.5158 -7.0414 26 1 14.3366 3.8370 -5.8653 27 6 2.0419 -0.7236 -1.2495 28 1 -0.3633 0.5128 0.8906 29 1 -0.3634 0.5149 -0.8894 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6971 -1.7571 1.2353 32 1 1.6577 -0.2244 2.1390 33 1 3.9334 -1.1886 2.1676 34 1 3.9154 0.3399 1.2546 35 1 5.1901 -1.3230 -0.0128 36 1 3.8408 -2.4813 0.0886 37 1 6.1325 0.0566 -1.2151 38 1 6.0603 -1.5521 -1.9737 39 1 6.0696 -0.4960 -4.2167 40 1 6.1418 1.1130 -3.4589 41 1 8.2957 -0.2278 -2.3987 42 1 6.6629 2.3082 -5.5268 43 1 7.8852 2.8888 -6.6832 44 1 7.3681 1.1860 -6.7150 45 1 8.9777 3.6814 -4.5172 46 1 9.9294 2.4495 -3.6541 47 1 12.2739 5.2598 -4.0612 48 1 1.6062 -1.7216 -1.2979 49 1 1.7621 -0.1593 -2.1390 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365751535.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:40 Heat of formation + Delta-G solvation = -152.355449 kcal Electronic energy + Delta-G solvation = -29253.995627 eV Core-core repulsion = 25148.153076 eV Total energy + Delta-G solvation = -4105.842551 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.31098 -38.79734 -38.27735 -37.22790 -36.85274 -36.63368 -34.87767 -34.49961 -32.75002 -31.37635 -29.66787 -27.74171 -26.80477 -26.55902 -24.26737 -24.17652 -23.20649 -21.30470 -20.59785 -19.80539 -18.98967 -18.44354 -18.25486 -18.18174 -17.22304 -16.93973 -16.79360 -16.55654 -15.94576 -15.67845 -15.39070 -15.25329 -15.04596 -14.95552 -14.58312 -14.37002 -14.07641 -14.00848 -13.87435 -13.56965 -13.36614 -13.26144 -13.15335 -13.03281 -13.02348 -12.92762 -12.82813 -12.64903 -12.48922 -12.45272 -12.36051 -11.99739 -11.96392 -11.78688 -11.72799 -11.61138 -11.28763 -10.85286 -10.61495 -10.52835 -9.79554 -9.64199 -8.20375 -6.31915 -0.31931 1.38866 1.40920 1.53014 1.56570 1.86582 2.13039 2.40888 2.64288 3.10415 3.43469 3.50397 3.71749 3.85798 3.90217 3.95792 4.03981 4.09850 4.11616 4.33536 4.40264 4.46286 4.53712 4.60138 4.68170 4.70189 4.79956 4.81750 4.83233 4.86980 4.89658 4.94133 5.00246 5.06823 5.13819 5.19971 5.20377 5.27815 5.32113 5.47213 5.48947 5.57958 5.69309 5.85842 6.09679 6.17801 6.35899 6.76439 7.11646 7.36789 8.87467 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020378 B = 0.002202 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.694136 B =12711.997967 C =12929.820202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.103 4.103 3 H 0.057 0.943 4 C -0.113 4.113 5 C -0.135 4.135 6 C 0.096 3.904 7 N -0.611 5.611 8 C 0.513 3.487 9 O -0.584 6.584 10 C -0.139 4.139 11 C 0.132 3.868 12 N -1.116 6.116 13 S 2.801 3.199 14 O -1.005 7.005 15 O -1.011 7.011 16 N -1.004 6.004 17 C 0.089 3.911 18 C 0.271 3.729 19 C -0.548 4.548 20 H 0.051 0.949 21 C 0.011 3.989 22 N -0.924 5.924 23 Si 0.958 3.042 24 H -0.271 1.271 25 H -0.270 1.270 26 H -0.278 1.278 27 C 0.112 3.888 28 H 0.065 0.935 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.058 0.942 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.426 0.574 42 H 0.066 0.934 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.027 0.973 46 H 0.021 0.979 47 H 0.268 0.732 48 H 0.079 0.921 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.800 -12.687 15.375 29.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.123 4.123 3 H 0.075 0.925 4 C -0.150 4.150 5 C -0.173 4.173 6 C -0.026 4.026 7 N -0.343 5.343 8 C 0.302 3.698 9 O -0.464 6.464 10 C -0.180 4.180 11 C 0.005 3.995 12 N -0.880 5.880 13 S 2.808 3.192 14 O -0.989 6.989 15 O -0.994 6.994 16 N -0.845 5.845 17 C -0.057 4.057 18 C 0.148 3.852 19 C -0.588 4.588 20 H 0.069 0.931 21 C -0.188 4.188 22 N -0.564 5.564 23 Si 0.783 3.217 24 H -0.195 1.195 25 H -0.196 1.196 26 H -0.203 1.203 27 C -0.010 4.010 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.116 0.884 34 H 0.077 0.923 35 H 0.122 0.878 36 H 0.105 0.895 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.262 0.738 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.045 0.955 46 H 0.039 0.961 47 H 0.076 0.924 48 H 0.097 0.903 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -21.540 -12.930 14.355 28.935 hybrid contribution 0.767 0.765 -0.176 1.098 sum -20.773 -12.165 14.178 27.938 Atomic orbital electron populations 1.21747 0.93478 1.02670 1.02187 1.21460 0.96728 0.99212 0.94880 0.92459 1.21593 0.95343 1.01207 0.96893 1.21939 0.96074 1.01186 0.98123 1.22107 0.99620 0.97964 0.82863 1.48233 1.06964 1.60554 1.18557 1.20864 0.90020 0.76708 0.82193 1.90712 1.76416 1.46514 1.32764 1.21855 0.90318 1.06129 0.99726 1.20971 0.77610 1.01607 0.99312 1.55714 1.16293 1.88947 1.27016 1.01126 0.72078 0.72667 0.73304 1.93582 1.35728 1.86616 1.82975 1.93505 1.79760 1.67018 1.59111 1.57478 1.43000 1.26964 1.57082 1.21551 0.89008 1.02470 0.92641 1.18632 0.87037 0.86081 0.93498 1.21865 1.09282 1.20312 1.07300 0.93061 1.25752 1.00419 0.95331 0.97347 1.70013 1.35804 1.24219 1.26333 0.85514 0.78982 0.78226 0.79022 1.19546 1.19559 1.20315 1.21711 0.79178 1.01246 0.98893 0.91549 0.93074 0.91521 0.90704 0.90916 0.88421 0.92332 0.87798 0.89470 0.85331 0.85328 0.91117 0.91695 0.73794 0.91541 0.90974 0.90802 0.95522 0.96091 0.92352 0.90314 0.91481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.20 71.98 0.66 -0.64 16 2 C -0.10 -1.18 2.87 -10.72 -0.03 -1.21 16 3 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 4 C -0.11 -0.83 5.17 30.62 0.16 -0.67 16 5 C -0.14 -0.91 6.08 30.67 0.19 -0.72 16 6 C 0.10 0.75 6.34 86.36 0.55 1.30 16 7 N -0.61 -9.34 2.98 -818.83 -2.44 -11.78 16 8 C 0.51 10.96 7.70 87.65 0.67 11.64 16 9 O -0.58 -17.85 15.40 -3.03 -0.05 -17.89 16 10 C -0.14 -2.31 4.19 29.85 0.13 -2.18 16 11 C 0.13 3.31 5.54 86.38 0.48 3.79 16 12 N -1.12 -31.02 6.05 -187.49 -1.14 -32.15 16 13 S 2.80 111.50 6.10 -56.49 -0.34 111.16 16 14 O -1.01 -48.20 17.11 -128.00 -2.19 -50.39 16 15 O -1.01 -42.66 16.21 -128.00 -2.07 -44.74 16 16 N -1.00 -42.87 3.23 -543.22 -1.75 -44.62 16 17 C 0.09 3.21 10.68 127.77 1.36 4.57 16 18 C 0.27 13.99 5.08 85.63 0.43 14.43 16 19 C -0.55 -31.61 9.38 25.60 0.24 -31.37 16 20 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 21 C 0.01 0.62 5.46 84.65 0.46 1.09 16 22 N -0.92 -54.53 13.29 21.45 0.28 -54.24 16 23 Si 0.96 45.25 29.54 68.60 2.03 47.28 16 24 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 25 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 26 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 27 C 0.11 1.68 5.71 86.36 0.49 2.18 16 28 H 0.07 0.51 8.14 -2.39 -0.02 0.50 16 29 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.10 0.51 5.93 -2.39 -0.01 0.49 16 36 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.13 1.47 7.69 -2.39 -0.02 1.45 16 38 H 0.13 1.46 7.94 -2.38 -0.02 1.44 16 39 H 0.07 2.00 7.71 -2.39 -0.02 1.98 16 40 H 0.06 1.75 8.10 -2.39 -0.02 1.73 16 41 H 0.43 9.36 8.65 -96.75 -0.84 8.53 16 42 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.07 2.66 8.07 -2.39 -0.02 2.64 16 44 H 0.07 2.54 7.02 -2.39 -0.02 2.53 16 45 H 0.03 1.40 8.11 -2.38 -0.02 1.38 16 46 H 0.02 1.15 7.61 -2.38 -0.02 1.13 16 47 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 48 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 49 H 0.07 1.38 7.02 -2.39 -0.02 1.36 16 Total: -1.00 -79.89 404.15 -1.78 -81.67 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 0.10 Total: 13.52 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: 5.80 Total: 2.20 kcal Atomic # 7 Polarization: -137.76 SS G_CDS: -5.04 Total: -142.80 kcal Atomic # 8 Polarization: -108.71 SS G_CDS: -4.31 Total: -113.02 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Atomic # 16 Polarization: 111.50 SS G_CDS: -0.34 Total: 111.16 kcal Total: -79.89 -1.78 -81.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365751535.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.687 kcal (2) G-P(sol) polarization free energy of solvation -79.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds