Wall clock time and date at job start Wed Apr 1 2020 05:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 110.26852 * 2 1 4 4 C 1.53998 * 110.30623 * 237.91501 * 2 1 3 5 5 N 1.47900 * 107.05419 * 242.20614 * 4 2 1 6 6 C 1.46901 * 110.99996 * 214.15887 * 5 4 2 7 7 C 1.53006 * 109.46970 * 307.39460 * 6 5 4 8 8 C 1.50693 * 109.46956 * 180.02562 * 7 6 5 9 9 O 1.21280 * 120.00379 * 359.97438 * 8 7 6 10 10 N 1.34786 * 119.99803 * 180.02562 * 8 7 6 11 11 C 1.46491 * 119.99833 * 359.97438 * 10 8 7 12 12 C 1.46496 * 119.99810 * 180.02562 * 10 8 7 13 13 C 1.50697 * 109.47294 * 89.99533 * 12 10 8 14 14 H 1.08000 * 119.99968 * 359.97438 * 13 12 10 15 15 C 1.37884 * 119.99839 * 179.97438 * 13 12 10 16 16 N 1.31511 * 120.00032 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 120.00124 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.46990 * 89.99910 * 17 15 13 19 19 H 1.48491 * 109.47361 * 210.00095 * 17 15 13 20 20 H 1.48501 * 109.47058 * 330.00293 * 17 15 13 21 21 C 1.48536 * 105.82189 * 334.66788 * 5 4 2 22 22 C 1.54591 * 110.39350 * 122.14651 * 2 1 3 23 23 H 1.08990 * 110.72764 * 22.55929 * 22 2 1 24 24 C 1.52997 * 110.72326 * 259.27353 * 22 2 1 25 25 S 1.81398 * 109.47281 * 180.02562 * 24 22 2 26 26 N 1.65598 * 104.45166 * 180.02562 * 25 24 22 27 27 O 1.42097 * 110.54200 * 291.62432 * 25 24 22 28 28 O 1.42098 * 110.54262 * 68.37943 * 25 24 22 29 29 H 1.09007 * 109.46720 * 180.63469 * 1 2 3 30 30 H 1.08996 * 109.47131 * 300.63210 * 1 2 3 31 31 H 1.08994 * 109.47608 * 60.63651 * 1 2 3 32 32 H 1.08998 * 109.91739 * 122.85446 * 4 2 1 33 33 H 1.08995 * 110.08105 * 1.64833 * 4 2 1 34 34 H 1.08998 * 109.47498 * 67.39328 * 6 5 4 35 35 H 1.09001 * 109.47092 * 187.39784 * 6 5 4 36 36 H 1.08998 * 109.46902 * 300.00233 * 7 6 5 37 37 H 1.09001 * 109.46949 * 60.00236 * 7 6 5 38 38 H 1.09000 * 109.47669 * 90.00217 * 11 10 8 39 39 H 1.09002 * 109.47446 * 210.00199 * 11 10 8 40 40 H 1.09001 * 109.47845 * 330.00441 * 11 10 8 41 41 H 1.09002 * 109.46932 * 209.99810 * 12 10 8 42 42 H 1.09004 * 109.47523 * 329.99285 * 12 10 8 43 43 H 0.96996 * 120.00473 * 180.02562 * 16 15 13 44 44 H 1.09004 * 110.66813 * 157.64005 * 21 5 4 45 45 H 1.09000 * 110.66721 * 280.77504 * 21 5 4 46 46 H 1.09004 * 109.47542 * 300.05174 * 24 22 2 47 47 H 1.09008 * 109.47371 * 60.04698 * 24 22 2 48 48 H 0.97003 * 120.00376 * 359.97438 * 26 25 24 49 49 H 0.97000 * 120.00260 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9076 1.0225 0.0000 4 6 2.0645 -0.7672 -1.2237 5 7 2.8333 -1.9215 -0.7101 6 6 3.9769 -2.2222 -1.5818 7 6 3.4919 -2.3736 -3.0251 8 6 4.6649 -2.6827 -3.9192 9 8 5.7791 -2.7726 -3.4487 10 7 4.4759 -2.8583 -5.2422 11 6 3.1302 -2.7492 -5.8106 12 6 5.6161 -3.1593 -6.1113 13 6 5.8031 -4.6523 -6.1957 14 1 5.1392 -5.3110 -5.6555 15 6 6.8217 -5.1773 -6.9625 16 7 6.9846 -6.4801 -7.0365 17 14 7.9694 -4.0379 -7.8973 18 1 9.1300 -3.6907 -7.0384 19 1 8.4495 -4.7186 -9.1266 20 1 7.2412 -2.7986 -8.2700 21 6 3.2883 -1.5325 0.6493 22 6 2.0687 -0.7710 1.2269 23 1 1.3208 -1.4690 1.6027 24 6 2.5070 0.1988 2.3260 25 16 3.1328 -0.7400 3.7465 26 7 3.5663 0.4177 4.8484 27 8 2.0766 -1.4482 4.3804 28 8 4.3547 -1.3865 3.4177 29 1 -0.3633 -1.0277 0.0114 30 1 -0.3633 0.5236 0.8842 31 1 -0.3634 0.5039 -0.8956 32 1 2.7147 -0.1203 -1.8125 33 1 1.2347 -1.1173 -1.8376 34 1 4.7007 -1.4092 -1.5251 35 1 4.4469 -3.1505 -1.2572 36 1 2.7681 -3.1866 -3.0817 37 1 3.0219 -1.4453 -3.3497 38 1 2.9431 -1.7168 -6.1061 39 1 3.0509 -3.3970 -6.6837 40 1 2.3951 -3.0526 -5.0652 41 1 5.4287 -2.7597 -7.1080 42 1 6.5167 -2.7030 -5.7004 43 1 7.7013 -6.8495 -7.5757 44 1 3.5092 -2.4158 1.2486 45 1 4.1582 -0.8782 0.5914 46 1 3.2944 0.8489 1.9444 47 1 1.6555 0.8039 2.6375 48 1 3.4511 1.3571 4.6357 49 1 3.9363 0.1565 5.7062 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413072743.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:51 Heat of formation + Delta-G solvation = -103.293312 kcal Electronic energy + Delta-G solvation = -29016.181555 eV Core-core repulsion = 24912.466498 eV Total energy + Delta-G solvation = -4103.715057 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.99824 -38.92348 -37.35944 -36.27659 -35.15705 -34.67086 -33.65784 -32.54746 -32.03585 -30.76844 -28.42028 -26.85890 -26.28070 -25.60306 -23.29919 -21.96596 -21.21730 -20.22738 -19.81687 -18.30314 -18.07186 -17.69335 -16.95952 -16.69300 -16.53753 -16.17393 -15.58960 -15.41098 -15.29444 -15.12868 -14.50603 -14.24790 -13.97088 -13.67088 -13.40121 -13.28511 -13.02679 -12.60997 -12.54028 -12.47847 -12.41521 -12.33452 -12.29169 -12.11684 -12.08071 -11.98382 -11.60085 -11.57812 -11.24516 -11.15477 -11.03787 -10.94843 -10.90228 -10.84904 -10.64999 -10.50270 -10.13793 -9.53020 -9.00588 -8.57592 -8.56830 -7.69689 -6.07082 -4.05804 -0.21192 2.42385 3.19883 3.29770 3.34924 3.35946 3.37362 3.51570 3.76198 3.89802 4.04477 4.18794 4.24490 4.40699 4.57629 4.63775 4.83725 4.99345 5.02486 5.05703 5.11395 5.15461 5.22862 5.29082 5.31800 5.47016 5.48405 5.52095 5.56546 5.64092 5.69291 5.71494 5.74391 5.84240 5.91431 6.03118 6.15066 6.19142 6.53446 6.67800 6.72016 6.86577 6.95498 7.34307 7.62413 8.25228 8.48610 8.94210 8.99940 9.53012 11.06356 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018839 B = 0.002080 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.912464 B =13455.508917 C =14344.188537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 H 0.079 0.921 4 C 0.032 3.968 5 N -0.512 5.512 6 C 0.062 3.938 7 C -0.138 4.138 8 C 0.507 3.493 9 O -0.542 6.542 10 N -0.599 5.599 11 C 0.084 3.916 12 C 0.215 3.785 13 C -0.528 4.528 14 H 0.074 0.926 15 C 0.071 3.929 16 N -0.897 5.897 17 Si 0.877 3.123 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.267 1.267 21 C 0.021 3.979 22 C -0.081 4.081 23 H 0.104 0.896 24 C -0.613 4.613 25 S 2.608 3.392 26 N -1.254 6.254 27 O -0.962 6.962 28 O -0.953 6.953 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.086 0.914 34 H 0.046 0.954 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.044 0.956 39 H 0.075 0.925 40 H 0.061 0.939 41 H 0.029 0.971 42 H 0.036 0.964 43 H 0.264 0.736 44 H 0.094 0.906 45 H 0.060 0.940 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.411 0.589 49 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.367 20.682 19.818 32.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 H 0.098 0.902 4 C -0.096 4.096 5 N -0.236 5.236 6 C -0.066 4.066 7 C -0.178 4.178 8 C 0.293 3.707 9 O -0.420 6.420 10 N -0.331 5.331 11 C -0.060 4.060 12 C 0.094 3.906 13 C -0.567 4.567 14 H 0.092 0.908 15 C -0.131 4.131 16 N -0.536 5.536 17 Si 0.704 3.296 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.191 1.191 21 C -0.107 4.107 22 C -0.101 4.101 23 H 0.122 0.878 24 C -0.743 4.743 25 S 2.700 3.300 26 N -0.927 5.927 27 O -0.951 6.951 28 O -0.942 6.942 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.104 0.896 34 H 0.064 0.936 35 H 0.109 0.891 36 H 0.116 0.884 37 H 0.103 0.897 38 H 0.062 0.938 39 H 0.094 0.906 40 H 0.080 0.920 41 H 0.047 0.953 42 H 0.054 0.946 43 H 0.074 0.926 44 H 0.113 0.887 45 H 0.078 0.922 46 H 0.155 0.845 47 H 0.157 0.843 48 H 0.237 0.763 49 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -14.933 18.892 19.950 31.271 hybrid contribution 1.091 2.118 -0.719 2.489 sum -13.842 21.010 19.231 31.668 Atomic orbital electron populations 1.21869 0.93843 1.02716 1.01835 1.22012 0.96743 0.98922 0.93149 0.90227 1.23080 0.98491 0.91541 0.96483 1.64837 1.21627 1.35420 1.01724 1.22054 0.90819 1.02782 0.90979 1.21703 0.98202 1.03581 0.94336 1.20301 0.90047 0.77650 0.82674 1.90674 1.25805 1.51420 1.74107 1.47843 1.09034 1.68855 1.07367 1.21659 0.83879 1.00529 0.99970 1.19657 0.84801 0.97381 0.88713 1.21332 1.15716 0.89951 1.29685 0.90753 1.24873 0.96972 0.94996 0.96272 1.69896 1.32276 1.10838 1.40552 0.86834 0.81899 0.81142 0.79689 1.19919 1.21073 1.19136 1.23617 0.95389 1.00006 0.91673 1.21944 0.98871 0.95595 0.93727 0.87801 1.30438 1.13145 1.13398 1.17274 1.04962 0.75241 0.74209 0.75583 1.53191 1.84101 1.21982 1.33441 1.93623 1.58477 1.70012 1.72955 1.93657 1.44304 1.72204 1.84025 0.91673 0.92616 0.92147 0.93215 0.89558 0.93600 0.89131 0.88369 0.89701 0.93794 0.90590 0.91997 0.95310 0.94620 0.92565 0.88742 0.92191 0.84473 0.84337 0.76331 0.75051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 8.90 37.16 0.33 -0.49 16 2 C -0.09 -0.59 3.16 -89.26 -0.28 -0.87 16 3 H 0.08 0.44 7.85 -51.93 -0.41 0.03 16 4 C 0.03 0.29 4.98 -2.75 -0.01 0.27 16 5 N -0.51 -5.93 5.40 -230.44 -1.24 -7.17 16 6 C 0.06 0.88 4.28 -3.82 -0.02 0.86 16 7 C -0.14 -1.98 4.00 -27.88 -0.11 -2.09 16 8 C 0.51 10.30 7.67 -10.98 -0.08 10.22 16 9 O -0.54 -13.41 15.56 5.56 0.09 -13.33 16 10 N -0.60 -12.40 2.86 -182.96 -0.52 -12.92 16 11 C 0.08 1.27 10.24 59.84 0.61 1.88 16 12 C 0.22 5.33 4.23 -5.20 -0.02 5.31 16 13 C -0.53 -15.41 9.94 -34.44 -0.34 -15.75 16 14 H 0.07 2.38 8.06 -52.49 -0.42 1.96 16 15 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 16 N -0.90 -28.01 13.96 55.43 0.77 -27.24 16 17 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 18 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 21 C 0.02 0.22 4.89 -1.89 -0.01 0.21 16 22 C -0.08 -0.60 2.64 -88.76 -0.23 -0.83 16 23 H 0.10 0.77 7.86 -51.93 -0.41 0.36 16 24 C -0.61 -2.61 5.45 37.16 0.20 -2.41 16 25 S 2.61 18.34 5.76 -107.50 -0.62 17.72 16 26 N -1.25 -4.43 9.43 60.35 0.57 -3.86 16 27 O -0.96 -10.43 18.10 -57.54 -1.04 -11.48 16 28 O -0.95 -10.73 16.78 -57.54 -0.97 -11.70 16 29 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.05 0.45 7.14 -51.93 -0.37 0.08 16 33 H 0.09 0.72 7.69 -51.93 -0.40 0.32 16 34 H 0.05 0.68 7.85 -51.93 -0.41 0.27 16 35 H 0.09 1.48 8.10 -51.93 -0.42 1.06 16 36 H 0.10 1.34 7.40 -51.93 -0.38 0.95 16 37 H 0.08 0.99 6.59 -51.93 -0.34 0.65 16 38 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 40 H 0.06 0.78 6.44 -51.93 -0.33 0.44 16 41 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 42 H 0.04 0.94 6.85 -51.93 -0.36 0.59 16 43 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 44 H 0.09 1.07 7.65 -51.93 -0.40 0.67 16 45 H 0.06 0.61 7.73 -51.93 -0.40 0.21 16 46 H 0.14 0.33 8.10 -51.92 -0.42 -0.09 16 47 H 0.14 0.20 8.14 -51.92 -0.42 -0.22 16 48 H 0.41 0.12 8.83 -34.47 -0.30 -0.18 16 49 H 0.42 1.29 8.96 -34.47 -0.31 0.98 16 LS Contribution 399.23 15.07 6.02 6.02 Total: -1.00 -41.10 399.23 -9.84 -50.94 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -8.16 Total: -2.45 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -0.07 Total: -1.68 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: -0.42 Total: -51.19 kcal Atomic # 8 Polarization: -34.58 SS G_CDS: -1.92 Total: -36.50 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Atomic # 16 Polarization: 18.34 SS G_CDS: -0.62 Total: 17.72 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -41.10 -9.84 -50.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413072743.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.352 kcal (2) G-P(sol) polarization free energy of solvation -41.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds