Wall clock time and date at job start Wed Apr 1 2020 05:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47344 * 2 1 4 4 C 1.50700 * 109.47194 * 240.00101 * 2 1 3 5 5 H 1.08006 * 119.99667 * 272.38750 * 4 2 1 6 6 C 1.37873 * 120.00056 * 92.37704 * 4 2 1 7 7 N 1.31517 * 120.00310 * 177.49219 * 6 4 2 8 8 Si 1.86804 * 119.99947 * 357.49516 * 6 4 2 9 9 H 1.48501 * 109.46843 * 84.83871 * 8 6 4 10 10 H 1.48498 * 109.47123 * 204.83255 * 8 6 4 11 11 H 1.48498 * 109.47154 * 324.83704 * 8 6 4 12 12 N 1.46506 * 109.47150 * 120.00020 * 2 1 3 13 13 C 1.46498 * 119.99976 * 59.99954 * 12 2 1 14 14 S 1.65598 * 119.99707 * 239.99771 * 12 2 1 15 15 O 1.42094 * 106.40508 * 336.46181 * 14 12 2 16 16 O 1.42100 * 106.39788 * 203.54082 * 14 12 2 17 17 N 1.65597 * 107.21667 * 90.00357 * 14 12 2 18 18 C 1.46929 * 120.63026 * 270.01884 * 17 14 12 19 19 C 1.53189 * 108.77454 * 126.36954 * 18 17 14 20 20 C 1.53038 * 109.33867 * 54.62064 * 19 18 17 21 21 C 1.53033 * 109.53987 * 298.68103 * 20 19 18 22 22 H 1.09002 * 109.49697 * 301.34995 * 21 20 19 23 23 C 1.50707 * 109.50029 * 181.28482 * 21 20 19 24 24 O 1.21278 * 119.99791 * 259.55367 * 23 21 20 25 25 N 1.34776 * 119.99936 * 79.55001 * 23 21 20 26 26 C 1.46493 * 119.99959 * 185.35543 * 25 23 21 27 27 C 1.46507 * 119.99741 * 5.07188 * 25 23 21 28 28 C 1.46927 * 120.63249 * 89.99803 * 17 14 12 29 29 H 1.08992 * 109.47124 * 175.53039 * 1 2 3 30 30 H 1.09004 * 109.46997 * 295.52468 * 1 2 3 31 31 H 1.08996 * 109.47434 * 55.52313 * 1 2 3 32 32 H 0.96996 * 120.00295 * 180.02562 * 7 6 4 33 33 H 1.08995 * 109.46922 * 270.00250 * 13 12 2 34 34 H 1.09003 * 109.47127 * 30.00057 * 13 12 2 35 35 H 1.08997 * 109.47115 * 149.99819 * 13 12 2 36 36 H 1.09002 * 109.58535 * 246.15705 * 18 17 14 37 37 H 1.08998 * 109.58349 * 6.58417 * 18 17 14 38 38 H 1.09002 * 109.49422 * 174.58577 * 19 18 17 39 39 H 1.08999 * 109.50184 * 294.65198 * 19 18 17 40 40 H 1.09001 * 109.48674 * 178.64233 * 20 19 18 41 41 H 1.09008 * 109.43629 * 58.68989 * 20 19 18 42 42 H 1.09000 * 109.46864 * 269.72028 * 26 25 23 43 43 H 1.08996 * 109.47789 * 29.72329 * 26 25 23 44 44 H 1.09000 * 109.47374 * 149.72245 * 26 25 23 45 45 H 1.09002 * 109.46448 * 180.57704 * 27 25 23 46 46 H 1.08996 * 109.47297 * 300.57636 * 27 25 23 47 47 H 1.08999 * 109.46913 * 60.58756 * 27 25 23 48 48 H 1.08999 * 109.58825 * 113.83821 * 28 17 14 49 49 H 1.09003 * 109.58828 * 353.41478 * 28 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.1756 -1.7808 -1.2153 6 6 2.3088 0.0061 -2.3755 7 7 2.7939 -0.6064 -3.4335 8 14 1.9946 1.8468 -2.4243 9 1 3.1658 2.5640 -1.8593 10 1 1.7825 2.2757 -3.8300 11 1 0.7858 2.1640 -1.6222 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 16 2.9705 0.1142 2.2862 15 8 3.5794 1.1829 1.5748 16 8 3.7119 -0.8789 2.9814 17 7 1.9608 0.8090 3.3998 18 6 1.4370 2.1658 3.1915 19 6 -0.0902 2.1275 3.3047 20 6 -0.4835 1.5008 4.6444 21 6 0.0426 0.0653 4.7120 22 1 -0.3690 -0.5123 3.8843 23 6 -0.3721 -0.5615 6.0182 24 8 0.4198 -0.6353 6.9338 25 7 -1.6231 -1.0399 6.1689 26 6 -2.0631 -1.5419 7.4729 27 6 -2.5447 -1.0522 5.0302 28 6 1.5714 0.0802 4.6147 29 1 -0.3633 -1.0245 -0.0801 30 1 -0.3633 0.4428 0.9274 31 1 -0.3634 0.5817 -0.8471 32 1 2.9888 -0.1023 -4.2389 33 1 0.7376 -2.1443 1.9993 34 1 1.5295 -2.5969 0.4708 35 1 2.4629 -2.5819 1.9863 36 1 1.8430 2.8348 3.9503 37 1 1.7211 2.5190 2.2002 38 1 -0.4848 3.1421 3.2479 39 1 -0.5007 1.5314 2.4897 40 1 -1.5695 1.4943 4.7379 41 1 -0.0527 2.0842 5.4582 42 1 -1.8473 -2.6079 7.5435 43 1 -1.5341 -1.0109 8.2642 44 1 -3.1357 -1.3804 7.5814 45 1 -3.5047 -1.4621 5.3442 46 1 -2.6858 -0.0347 4.6659 47 1 -2.1295 -1.6693 4.2334 48 1 1.9884 0.5790 5.4895 49 1 1.9441 -0.9428 4.5624 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413462000.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:55 Heat of formation + Delta-G solvation = -102.816934 kcal Electronic energy + Delta-G solvation = -31711.790183 eV Core-core repulsion = 27608.095782 eV Total energy + Delta-G solvation = -4103.694400 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.50496 -37.94184 -36.82293 -36.32112 -35.82614 -35.27960 -32.67153 -32.47267 -31.45802 -29.97677 -28.37832 -26.61490 -25.71515 -25.20733 -24.61913 -23.62883 -21.22120 -20.40746 -19.28178 -18.53581 -17.59906 -17.37087 -17.06141 -16.40343 -16.30624 -15.96851 -15.74741 -14.90580 -14.71588 -14.31623 -14.12775 -13.97517 -13.74772 -13.49641 -13.24096 -13.07745 -13.02918 -12.81449 -12.78776 -12.65288 -12.50149 -12.31521 -12.01984 -11.92116 -11.78051 -11.68265 -11.48782 -11.43486 -11.22996 -11.12966 -11.01276 -10.79404 -10.67573 -10.54067 -10.34496 -9.92298 -9.83174 -9.37568 -9.00962 -8.93565 -8.65244 -8.07182 -6.18188 -4.19038 1.05751 2.38085 2.69852 3.25049 3.30323 3.36412 3.39647 3.96904 4.22635 4.34944 4.50926 4.57242 4.71349 4.77994 4.83064 4.94040 5.02711 5.04431 5.15239 5.16188 5.20729 5.28249 5.34265 5.38396 5.48886 5.63610 5.68712 5.70309 5.71180 5.81407 5.87547 5.98843 6.04105 6.10205 6.14478 6.16757 6.35281 6.41111 6.50825 6.58884 6.65989 6.91740 7.01363 7.14855 7.48810 7.62700 7.91162 8.41447 8.85885 9.42832 10.93924 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016008 B = 0.003929 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.757533 B = 7124.502033 C = 7352.876849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.238 3.762 3 H 0.053 0.947 4 C -0.519 4.519 5 H 0.082 0.918 6 C 0.078 3.922 7 N -0.889 5.889 8 Si 0.864 3.136 9 H -0.265 1.265 10 H -0.286 1.286 11 H -0.261 1.261 12 N -0.983 5.983 13 C 0.096 3.904 14 S 2.769 3.231 15 O -0.972 6.972 16 O -0.988 6.988 17 N -1.011 6.011 18 C 0.120 3.880 19 C -0.136 4.136 20 C -0.101 4.101 21 C -0.123 4.123 22 H 0.101 0.899 23 C 0.523 3.477 24 O -0.535 6.535 25 N -0.624 5.624 26 C 0.086 3.914 27 C 0.076 3.924 28 C 0.144 3.856 29 H 0.052 0.948 30 H 0.026 0.974 31 H 0.055 0.945 32 H 0.267 0.733 33 H 0.034 0.966 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.054 0.946 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.077 0.923 46 H 0.066 0.934 47 H 0.066 0.934 48 H 0.081 0.919 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.214 2.490 17.516 22.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.134 3.866 3 H 0.071 0.929 4 C -0.559 4.559 5 H 0.100 0.900 6 C -0.126 4.126 7 N -0.526 5.526 8 Si 0.690 3.310 9 H -0.190 1.190 10 H -0.212 1.212 11 H -0.185 1.185 12 N -0.824 5.824 13 C -0.050 4.050 14 S 2.780 3.220 15 O -0.956 6.956 16 O -0.972 6.972 17 N -0.848 5.848 18 C -0.006 4.006 19 C -0.175 4.175 20 C -0.139 4.139 21 C -0.146 4.146 22 H 0.119 0.881 23 C 0.310 3.690 24 O -0.411 6.411 25 N -0.359 5.359 26 C -0.057 4.057 27 C -0.067 4.067 28 C 0.018 3.982 29 H 0.071 0.929 30 H 0.045 0.955 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.053 0.947 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.110 0.890 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.073 0.927 43 H 0.093 0.907 44 H 0.087 0.913 45 H 0.096 0.904 46 H 0.084 0.916 47 H 0.084 0.916 48 H 0.099 0.901 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.739 2.531 17.832 22.061 hybrid contribution -0.779 0.792 -0.280 1.146 sum -13.518 3.323 17.551 22.402 Atomic orbital electron populations 1.22348 0.98446 1.01225 0.98904 1.18990 0.91005 0.93028 0.83567 0.92945 1.21134 1.44530 0.96463 0.93752 0.90006 1.24972 0.93729 0.98292 0.95606 1.69883 1.42606 1.36580 1.03538 0.87078 0.80115 0.86341 0.77445 1.19050 1.21193 1.18548 1.57894 1.69930 1.19888 1.34719 1.21315 0.98696 0.82247 1.02758 1.02441 0.74012 0.73174 0.72358 1.93586 1.73808 1.56051 1.72149 1.93532 1.69066 1.60147 1.74434 1.58531 1.67190 1.24482 1.34618 1.21389 0.93522 0.82798 1.02902 1.21989 0.96333 1.01701 0.97462 1.21401 1.00506 0.93213 0.98777 1.21743 0.98851 0.98412 0.95611 0.88092 1.20616 0.81168 0.77402 0.89789 1.90704 1.50795 1.56789 1.42838 1.47770 1.13189 1.63312 1.11589 1.21658 0.99758 0.99481 0.84800 1.21911 0.93484 1.02547 0.88776 1.21073 0.91648 0.97781 0.87741 0.92855 0.95477 0.92649 0.92331 0.94696 0.89645 0.91661 0.91259 0.89001 0.90356 0.90416 0.91342 0.91175 0.92718 0.90689 0.91310 0.90400 0.91586 0.91577 0.90103 0.89087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 8.96 37.16 0.33 -2.40 16 2 C 0.24 5.24 2.20 -69.08 -0.15 5.08 16 3 H 0.05 1.23 4.55 -51.93 -0.24 0.99 16 4 C -0.52 -13.80 8.72 -34.44 -0.30 -14.10 16 5 H 0.08 2.33 6.83 -52.48 -0.36 1.97 16 6 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 7 N -0.89 -26.35 13.96 55.43 0.77 -25.57 16 8 Si 0.86 20.85 26.38 -169.99 -4.48 16.37 16 9 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.26 -5.69 6.12 56.52 0.35 -5.34 16 12 N -0.98 -19.36 3.12 -115.85 -0.36 -19.72 16 13 C 0.10 1.63 9.79 59.85 0.59 2.21 16 14 S 2.77 54.53 6.10 -107.50 -0.66 53.87 16 15 O -0.97 -22.39 15.42 -57.17 -0.88 -23.27 16 16 O -0.99 -21.04 15.45 -57.17 -0.88 -21.93 16 17 N -1.01 -15.11 3.35 -113.52 -0.38 -15.49 16 18 C 0.12 1.52 6.38 -3.71 -0.02 1.49 16 19 C -0.14 -1.33 6.08 -26.61 -0.16 -1.49 16 20 C -0.10 -0.91 5.05 -26.69 -0.13 -1.04 16 21 C -0.12 -1.33 1.96 -91.65 -0.18 -1.51 16 22 H 0.10 1.00 6.97 -51.93 -0.36 0.64 16 23 C 0.52 6.09 6.83 -10.98 -0.07 6.01 16 24 O -0.54 -8.10 15.55 5.56 0.09 -8.01 16 25 N -0.62 -5.49 3.27 -189.52 -0.62 -6.11 16 26 C 0.09 0.62 10.37 59.84 0.62 1.24 16 27 C 0.08 0.44 9.54 59.85 0.57 1.01 16 28 C 0.14 1.95 5.23 -3.71 -0.02 1.93 16 29 H 0.05 0.93 7.82 -51.93 -0.41 0.53 16 30 H 0.03 0.40 6.29 -51.93 -0.33 0.07 16 31 H 0.05 1.05 6.73 -51.93 -0.35 0.70 16 32 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 33 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 1.54 6.57 -51.93 -0.34 1.20 16 35 H 0.06 1.09 7.02 -51.93 -0.36 0.73 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.09 1.30 7.13 -51.93 -0.37 0.93 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.81 6.29 -51.93 -0.33 0.48 16 40 H 0.07 0.49 6.34 -51.93 -0.33 0.16 16 41 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 42 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.64 7.49 -51.93 -0.39 0.25 16 44 H 0.07 0.32 7.92 -51.93 -0.41 -0.09 16 45 H 0.08 0.30 7.79 -51.93 -0.40 -0.10 16 46 H 0.07 0.34 6.17 -51.93 -0.32 0.02 16 47 H 0.07 0.39 7.61 -51.93 -0.40 0.00 16 48 H 0.08 1.11 7.72 -51.93 -0.40 0.71 16 49 H 0.09 1.32 7.13 -51.93 -0.37 0.95 16 LS Contribution 382.91 15.07 5.77 5.77 Total: -1.00 -35.06 382.91 -8.44 -43.50 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -7.77 Total: 0.06 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: 0.97 Total: 0.54 kcal Atomic # 7 Polarization: -66.31 SS G_CDS: -0.59 Total: -66.90 kcal Atomic # 8 Polarization: -51.53 SS G_CDS: -1.68 Total: -53.21 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.48 Total: 16.37 kcal Atomic # 16 Polarization: 54.53 SS G_CDS: -0.66 Total: 53.87 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.06 -8.44 -43.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413462000.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.321 kcal (2) G-P(sol) polarization free energy of solvation -35.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds