Wall clock time and date at job start Wed Apr 1 2020 05:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47344 * 2 1 4 4 C 1.50700 * 109.47194 * 240.00101 * 2 1 3 5 5 H 1.08006 * 119.99667 * 272.38750 * 4 2 1 6 6 C 1.37873 * 120.00056 * 92.37704 * 4 2 1 7 7 N 1.31517 * 120.00310 * 177.49219 * 6 4 2 8 8 Si 1.86804 * 119.99947 * 357.49516 * 6 4 2 9 9 H 1.48501 * 109.46843 * 84.83871 * 8 6 4 10 10 H 1.48498 * 109.47123 * 204.83255 * 8 6 4 11 11 H 1.48498 * 109.47154 * 324.83704 * 8 6 4 12 12 N 1.46506 * 109.47150 * 120.00020 * 2 1 3 13 13 C 1.46498 * 119.99976 * 59.99954 * 12 2 1 14 14 S 1.65598 * 119.99707 * 239.99771 * 12 2 1 15 15 O 1.42094 * 106.40508 * 336.46181 * 14 12 2 16 16 O 1.42100 * 106.39788 * 203.54082 * 14 12 2 17 17 N 1.65597 * 107.21667 * 90.00357 * 14 12 2 18 18 C 1.46929 * 120.63026 * 270.01884 * 17 14 12 19 19 C 1.53189 * 108.77454 * 126.36954 * 18 17 14 20 20 C 1.53038 * 109.33867 * 54.62064 * 19 18 17 21 21 C 1.53033 * 109.53987 * 298.68103 * 20 19 18 22 22 H 1.09002 * 109.49697 * 301.34995 * 21 20 19 23 23 C 1.50707 * 109.50029 * 181.28482 * 21 20 19 24 24 O 1.21278 * 119.99791 * 259.55367 * 23 21 20 25 25 N 1.34776 * 119.99936 * 79.55001 * 23 21 20 26 26 C 1.46493 * 119.99959 * 185.35543 * 25 23 21 27 27 C 1.46507 * 119.99741 * 5.07188 * 25 23 21 28 28 C 1.46927 * 120.63249 * 89.99803 * 17 14 12 29 29 H 1.08992 * 109.47124 * 175.53039 * 1 2 3 30 30 H 1.09004 * 109.46997 * 295.52468 * 1 2 3 31 31 H 1.08996 * 109.47434 * 55.52313 * 1 2 3 32 32 H 0.96996 * 120.00295 * 180.02562 * 7 6 4 33 33 H 1.08995 * 109.46922 * 270.00250 * 13 12 2 34 34 H 1.09003 * 109.47127 * 30.00057 * 13 12 2 35 35 H 1.08997 * 109.47115 * 149.99819 * 13 12 2 36 36 H 1.09002 * 109.58535 * 246.15705 * 18 17 14 37 37 H 1.08998 * 109.58349 * 6.58417 * 18 17 14 38 38 H 1.09002 * 109.49422 * 174.58577 * 19 18 17 39 39 H 1.08999 * 109.50184 * 294.65198 * 19 18 17 40 40 H 1.09001 * 109.48674 * 178.64233 * 20 19 18 41 41 H 1.09008 * 109.43629 * 58.68989 * 20 19 18 42 42 H 1.09000 * 109.46864 * 269.72028 * 26 25 23 43 43 H 1.08996 * 109.47789 * 29.72329 * 26 25 23 44 44 H 1.09000 * 109.47374 * 149.72245 * 26 25 23 45 45 H 1.09002 * 109.46448 * 180.57704 * 27 25 23 46 46 H 1.08996 * 109.47297 * 300.57636 * 27 25 23 47 47 H 1.08999 * 109.46913 * 60.58756 * 27 25 23 48 48 H 1.08999 * 109.58825 * 113.83821 * 28 17 14 49 49 H 1.09003 * 109.58828 * 353.41478 * 28 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.1756 -1.7808 -1.2153 6 6 2.3088 0.0061 -2.3755 7 7 2.7939 -0.6064 -3.4335 8 14 1.9946 1.8468 -2.4243 9 1 3.1658 2.5640 -1.8593 10 1 1.7825 2.2757 -3.8300 11 1 0.7858 2.1640 -1.6222 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 16 2.9705 0.1142 2.2862 15 8 3.5794 1.1829 1.5748 16 8 3.7119 -0.8789 2.9814 17 7 1.9608 0.8090 3.3998 18 6 1.4370 2.1658 3.1915 19 6 -0.0902 2.1275 3.3047 20 6 -0.4835 1.5008 4.6444 21 6 0.0426 0.0653 4.7120 22 1 -0.3690 -0.5123 3.8843 23 6 -0.3721 -0.5615 6.0182 24 8 0.4198 -0.6353 6.9338 25 7 -1.6231 -1.0399 6.1689 26 6 -2.0631 -1.5419 7.4729 27 6 -2.5447 -1.0522 5.0302 28 6 1.5714 0.0802 4.6147 29 1 -0.3633 -1.0245 -0.0801 30 1 -0.3633 0.4428 0.9274 31 1 -0.3634 0.5817 -0.8471 32 1 2.9888 -0.1023 -4.2389 33 1 0.7376 -2.1443 1.9993 34 1 1.5295 -2.5969 0.4708 35 1 2.4629 -2.5819 1.9863 36 1 1.8430 2.8348 3.9503 37 1 1.7211 2.5190 2.2002 38 1 -0.4848 3.1421 3.2479 39 1 -0.5007 1.5314 2.4897 40 1 -1.5695 1.4943 4.7379 41 1 -0.0527 2.0842 5.4582 42 1 -1.8473 -2.6079 7.5435 43 1 -1.5341 -1.0109 8.2642 44 1 -3.1357 -1.3804 7.5814 45 1 -3.5047 -1.4621 5.3442 46 1 -2.6858 -0.0347 4.6659 47 1 -2.1295 -1.6693 4.2334 48 1 1.9884 0.5790 5.4895 49 1 1.9441 -0.9428 4.5624 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413462000.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:54 Heat of formation + Delta-G solvation = -129.929481 kcal Electronic energy + Delta-G solvation = -31712.965871 eV Core-core repulsion = 27608.095782 eV Total energy + Delta-G solvation = -4104.870088 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.33891 -38.89493 -38.48655 -37.95918 -36.95938 -36.57426 -34.47624 -33.63616 -32.37495 -31.62162 -28.91963 -27.30117 -27.23538 -27.01840 -25.60724 -24.48029 -22.57872 -21.66396 -20.07575 -19.85527 -19.24578 -18.95373 -18.14814 -17.93602 -17.33537 -17.00380 -16.67292 -16.44908 -15.71749 -15.60992 -15.31153 -14.97239 -14.80552 -14.75417 -14.56018 -14.44820 -14.27659 -13.83605 -13.78774 -13.58530 -13.51078 -13.40922 -13.38436 -13.17523 -13.12959 -13.02096 -12.93637 -12.81371 -12.55461 -12.46184 -12.39662 -12.02299 -11.98338 -11.84745 -11.71355 -11.50185 -11.17968 -10.78322 -10.74788 -10.06268 -9.66458 -9.65070 -8.29625 -6.33668 -0.47139 1.33223 1.42999 1.44466 1.55103 1.86646 2.13508 2.35416 2.48343 3.09706 3.25501 3.43474 3.69653 3.74776 3.95090 4.07539 4.09855 4.25554 4.32387 4.35803 4.47242 4.48909 4.52344 4.55561 4.68790 4.73327 4.77175 4.82282 4.83480 4.87967 4.91586 4.94520 4.96483 4.96693 5.03914 5.14322 5.18909 5.20352 5.36729 5.42945 5.51413 5.54753 5.62257 5.67900 6.00563 6.32234 6.35574 6.73001 7.12354 7.32052 8.86239 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016008 B = 0.003929 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.757533 B = 7124.502033 C = 7352.876849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.239 3.761 3 H 0.043 0.957 4 C -0.520 4.520 5 H 0.048 0.952 6 C 0.018 3.982 7 N -0.942 5.942 8 Si 0.912 3.088 9 H -0.282 1.282 10 H -0.282 1.282 11 H -0.216 1.216 12 N -0.989 5.989 13 C 0.093 3.907 14 S 2.781 3.219 15 O -1.011 7.011 16 O -1.012 7.012 17 N -0.998 5.998 18 C 0.106 3.894 19 C -0.128 4.128 20 C -0.095 4.095 21 C -0.117 4.117 22 H 0.117 0.883 23 C 0.518 3.482 24 O -0.582 6.582 25 N -0.619 5.619 26 C 0.082 3.918 27 C 0.067 3.933 28 C 0.142 3.858 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.266 0.734 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.106 0.894 39 H 0.079 0.921 40 H 0.097 0.903 41 H 0.066 0.934 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.101 0.899 45 H 0.101 0.899 46 H 0.080 0.920 47 H 0.068 0.932 48 H 0.076 0.924 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.192 4.000 19.286 26.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.135 3.865 3 H 0.060 0.940 4 C -0.560 4.560 5 H 0.066 0.934 6 C -0.181 4.181 7 N -0.582 5.582 8 Si 0.736 3.264 9 H -0.209 1.209 10 H -0.208 1.208 11 H -0.138 1.138 12 N -0.831 5.831 13 C -0.052 4.052 14 S 2.792 3.208 15 O -0.995 6.995 16 O -0.996 6.996 17 N -0.839 5.839 18 C -0.019 4.019 19 C -0.167 4.167 20 C -0.133 4.133 21 C -0.140 4.140 22 H 0.135 0.865 23 C 0.306 3.694 24 O -0.462 6.462 25 N -0.352 5.352 26 C -0.061 4.061 27 C -0.075 4.075 28 C 0.016 3.984 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.124 0.876 39 H 0.098 0.902 40 H 0.115 0.885 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.120 0.880 45 H 0.119 0.881 46 H 0.099 0.901 47 H 0.086 0.914 48 H 0.094 0.906 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.782 4.017 19.596 26.111 hybrid contribution 0.489 0.215 -0.677 0.862 sum -16.293 4.232 18.919 25.324 Atomic orbital electron populations 1.22195 0.94729 1.02170 1.01040 1.18894 0.93646 0.91808 0.82171 0.93965 1.21492 1.43437 0.95320 0.95715 0.93420 1.25794 0.94042 1.02809 0.95423 1.70028 1.45392 1.38376 1.04445 0.86295 0.81121 0.80838 0.78182 1.20858 1.20798 1.13809 1.57669 1.69930 1.20998 1.34494 1.21455 1.00635 0.80640 1.02471 1.01716 0.74145 0.72438 0.72471 1.93532 1.75220 1.57232 1.73474 1.93495 1.70217 1.61095 1.74785 1.58082 1.66791 1.25339 1.33681 1.21731 0.96156 0.81302 1.02671 1.21980 0.93440 1.03511 0.97759 1.21409 1.02158 0.91477 0.98250 1.21696 0.96361 1.00139 0.95758 0.86517 1.20772 0.81787 0.77424 0.89447 1.90689 1.52353 1.58921 1.44272 1.47896 1.12638 1.61724 1.12916 1.21783 1.01449 0.99087 0.83746 1.22191 0.93788 1.03740 0.87789 1.21132 0.94186 0.96650 0.86465 0.92258 0.91161 0.92975 0.92512 0.90286 0.91284 0.92060 0.89755 0.90450 0.87605 0.90230 0.88462 0.91489 0.92781 0.92472 0.88048 0.88077 0.90145 0.91383 0.90597 0.90594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.66 8.96 71.98 0.65 -4.01 16 2 C 0.24 10.23 2.20 44.24 0.10 10.33 16 3 H 0.04 1.91 4.55 -2.39 -0.01 1.90 16 4 C -0.52 -28.12 8.72 25.60 0.22 -27.90 16 5 H 0.05 2.83 6.83 -2.91 -0.02 2.81 16 6 C 0.02 1.03 5.47 84.65 0.46 1.49 16 7 N -0.94 -58.00 13.96 21.45 0.30 -57.70 16 8 Si 0.91 42.66 26.38 68.60 1.81 44.46 16 9 H -0.28 -13.91 7.11 99.48 0.71 -13.20 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 11 H -0.22 -8.45 6.12 99.48 0.61 -7.84 16 12 N -0.99 -38.07 3.12 -520.45 -1.62 -39.69 16 13 C 0.09 3.07 9.79 127.77 1.25 4.32 16 14 S 2.78 108.70 6.10 -56.49 -0.34 108.35 16 15 O -1.01 -46.94 15.42 -128.00 -1.97 -48.91 16 16 O -1.01 -43.67 15.45 -128.00 -1.98 -45.65 16 17 N -1.00 -28.10 3.35 -513.07 -1.72 -29.82 16 18 C 0.11 2.39 6.38 86.36 0.55 2.94 16 19 C -0.13 -1.88 6.08 30.67 0.19 -1.69 16 20 C -0.10 -1.27 5.05 30.62 0.15 -1.12 16 21 C -0.12 -2.13 1.96 -11.46 -0.02 -2.15 16 22 H 0.12 1.76 6.97 -2.39 -0.02 1.75 16 23 C 0.52 10.84 6.83 87.66 0.60 11.44 16 24 O -0.58 -17.24 15.55 -3.02 -0.05 -17.29 16 25 N -0.62 -8.81 3.27 -871.90 -2.85 -11.67 16 26 C 0.08 0.98 10.37 127.77 1.33 2.30 16 27 C 0.07 0.45 9.54 127.77 1.22 1.67 16 28 C 0.14 3.62 5.23 86.36 0.45 4.07 16 29 H 0.06 1.87 7.82 -2.39 -0.02 1.85 16 30 H 0.07 1.70 6.29 -2.38 -0.02 1.69 16 31 H 0.05 1.75 6.73 -2.39 -0.02 1.74 16 32 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 33 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.07 2.50 6.57 -2.39 -0.02 2.48 16 35 H 0.06 2.05 7.02 -2.39 -0.02 2.03 16 36 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.08 2.02 7.13 -2.39 -0.02 2.00 16 38 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.08 1.17 6.29 -2.39 -0.02 1.15 16 40 H 0.10 0.81 6.34 -2.39 -0.02 0.79 16 41 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 42 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.06 0.91 7.49 -2.39 -0.02 0.89 16 44 H 0.10 0.54 7.92 -2.39 -0.02 0.52 16 45 H 0.10 0.25 7.79 -2.39 -0.02 0.23 16 46 H 0.08 0.35 6.17 -2.39 -0.01 0.34 16 47 H 0.07 0.48 7.61 -2.39 -0.02 0.46 16 48 H 0.08 2.03 7.72 -2.39 -0.02 2.01 16 49 H 0.08 2.17 7.13 -2.39 -0.02 2.15 16 Total: -1.00 -81.40 382.91 -0.43 -81.84 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 0.85 Total: 14.37 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: 7.14 Total: 1.71 kcal Atomic # 7 Polarization: -132.99 SS G_CDS: -5.90 Total: -138.89 kcal Atomic # 8 Polarization: -107.85 SS G_CDS: -4.00 Total: -111.85 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 1.81 Total: 44.46 kcal Atomic # 16 Polarization: 108.70 SS G_CDS: -0.34 Total: 108.35 kcal Total: -81.40 -0.43 -81.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413462000.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.093 kcal (2) G-P(sol) polarization free energy of solvation -81.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds