Wall clock time and date at job start Wed Apr 1 2020 05:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46819 * 2 1 4 4 C 1.50697 * 109.46759 * 119.99738 * 2 1 3 5 5 H 1.08007 * 119.99613 * 119.99993 * 4 2 1 6 6 C 1.37878 * 120.00547 * 300.00257 * 4 2 1 7 7 N 1.31519 * 119.99687 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00451 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46771 * 359.97438 * 8 6 4 10 10 H 1.48489 * 109.47205 * 119.99610 * 8 6 4 11 11 H 1.48507 * 109.47045 * 240.00070 * 8 6 4 12 12 N 1.46491 * 109.47123 * 239.99844 * 2 1 3 13 13 C 1.46504 * 120.00120 * 300.00184 * 12 2 1 14 14 S 1.65600 * 119.99925 * 120.00352 * 12 2 1 15 15 O 1.42105 * 106.40162 * 336.45616 * 14 12 2 16 16 O 1.42104 * 106.40518 * 203.53837 * 14 12 2 17 17 N 1.65594 * 107.21944 * 89.99772 * 14 12 2 18 18 C 1.46930 * 120.63210 * 90.00352 * 17 14 12 19 19 C 1.53191 * 108.77518 * 233.58827 * 18 17 14 20 20 C 1.53044 * 109.31151 * 305.36339 * 19 18 17 21 21 C 1.53039 * 109.54057 * 61.36500 * 20 19 18 22 22 H 1.09004 * 109.52327 * 58.60304 * 21 20 19 23 23 C 1.50695 * 109.49632 * 178.68415 * 21 20 19 24 24 O 1.21283 * 120.00198 * 93.07573 * 23 21 20 25 25 N 1.34774 * 119.99885 * 273.07061 * 23 21 20 26 26 C 1.46507 * 119.99771 * 185.09303 * 25 23 21 27 27 C 1.46500 * 120.00172 * 5.09649 * 25 23 21 28 28 C 1.46927 * 120.63531 * 269.97941 * 17 14 12 29 29 H 1.08996 * 109.47009 * 300.00461 * 1 2 3 30 30 H 1.09004 * 109.46775 * 59.99570 * 1 2 3 31 31 H 1.08991 * 109.47159 * 179.97438 * 1 2 3 32 32 H 0.96995 * 120.00271 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.47133 * 269.99678 * 13 12 2 34 34 H 1.09001 * 109.46838 * 30.00296 * 13 12 2 35 35 H 1.08999 * 109.46737 * 150.00231 * 13 12 2 36 36 H 1.09005 * 109.58370 * 353.36795 * 18 17 14 37 37 H 1.08995 * 109.59029 * 113.79758 * 18 17 14 38 38 H 1.09003 * 109.49795 * 65.31066 * 19 18 17 39 39 H 1.08998 * 109.49935 * 185.40832 * 19 18 17 40 40 H 1.09000 * 109.45560 * 301.34261 * 20 19 18 41 41 H 1.09005 * 109.44640 * 181.38092 * 20 19 18 42 42 H 1.08999 * 109.47246 * 90.00264 * 26 25 23 43 43 H 1.09003 * 109.46970 * 209.99876 * 26 25 23 44 44 H 1.09000 * 109.47185 * 330.00090 * 26 25 23 45 45 H 1.09000 * 109.46876 * 5.23974 * 27 25 23 46 46 H 1.09001 * 109.47100 * 125.24664 * 27 25 23 47 47 H 1.09005 * 109.46833 * 245.24490 * 27 25 23 48 48 H 1.08998 * 109.58626 * 246.20586 * 28 17 14 49 49 H 1.09004 * 109.58098 * 6.62552 * 28 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9426 0.8297 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.1473 -2.2863 3.6039 10 1 3.1471 -0.1858 4.8161 11 1 1.1675 -1.5866 4.8166 12 7 2.0184 -0.6906 -1.1961 13 6 1.6644 -2.0932 -1.4279 14 16 2.9705 0.1142 -2.2861 15 8 2.6904 1.4973 -2.1192 16 8 2.8230 -0.5646 -3.5258 17 7 4.5438 -0.1042 -1.8178 18 6 5.3221 -1.2458 -2.3177 19 6 5.9049 -2.0064 -1.1224 20 6 6.7022 -1.0376 -0.2460 21 6 5.7726 0.0563 0.2843 22 1 4.9633 -0.3987 0.8554 23 6 6.5517 0.9912 1.1730 24 8 7.0485 1.9957 0.7092 25 7 6.6964 0.7111 2.4834 26 6 7.3568 1.6729 3.3694 27 6 6.1934 -0.5552 3.0217 28 6 5.1882 0.8402 -0.8950 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 0.7086 1.1613 3.4843 33 1 2.4157 -2.7377 -0.9716 34 1 0.6904 -2.3001 -0.9846 35 1 1.6239 -2.2852 -2.5001 36 1 4.6727 -1.9079 -2.8906 37 1 6.1321 -0.8862 -2.9521 38 1 5.0944 -2.4424 -0.5383 39 1 6.5626 -2.7983 -1.4807 40 1 7.4972 -0.5834 -0.8374 41 1 7.1383 -1.5814 0.5920 42 1 6.6141 2.3544 3.7840 43 1 7.8526 1.1390 4.1802 44 1 8.0952 2.2408 2.8034 45 1 5.8217 -1.1748 2.2056 46 1 7.0002 -1.0774 3.5361 47 1 5.3840 -0.3555 3.7239 48 1 5.9873 1.3700 -1.4135 49 1 4.4506 1.5546 -0.5294 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413462008.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:57 Heat of formation + Delta-G solvation = -103.770941 kcal Electronic energy + Delta-G solvation = -32407.310542 eV Core-core repulsion = 28303.574773 eV Total energy + Delta-G solvation = -4103.735769 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.14406 -37.66751 -36.76207 -36.16578 -35.40780 -35.25341 -32.65980 -32.44558 -31.19761 -29.10051 -28.00641 -26.20001 -25.60350 -25.20542 -24.39418 -23.38475 -20.95683 -20.54941 -18.85623 -18.40278 -17.37662 -16.82685 -16.80166 -16.48183 -15.93633 -15.59786 -15.50189 -14.88168 -14.45952 -14.23756 -13.84462 -13.77304 -13.57012 -13.42111 -13.19266 -12.83397 -12.67793 -12.56621 -12.50072 -12.38205 -12.02556 -11.96814 -11.81164 -11.69038 -11.52433 -11.40655 -11.22908 -11.18971 -11.08261 -10.95703 -10.88343 -10.80080 -10.50119 -10.35627 -10.31070 -10.08464 -9.52576 -9.30326 -8.71788 -8.60304 -8.54310 -7.97124 -6.16512 -4.24847 1.19610 2.77691 3.08982 3.11323 3.19187 3.21987 3.45513 4.08056 4.24830 4.55646 4.79372 4.89719 4.97177 5.01503 5.13549 5.18522 5.24460 5.32647 5.37865 5.45254 5.56323 5.59236 5.65856 5.69635 5.80296 5.84417 5.85599 5.89421 5.94208 6.08784 6.13868 6.18438 6.30204 6.40495 6.43821 6.53232 6.60260 6.77610 6.81595 6.91576 7.07503 7.42509 7.47433 7.57861 7.73254 7.99567 8.20785 8.30931 8.78275 9.40719 10.88554 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008621 B = 0.007189 C = 0.004780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3247.059843 B = 3894.048569 C = 5856.023574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.267 3.733 3 H 0.057 0.943 4 C -0.521 4.521 5 H 0.063 0.937 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.884 3.116 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.284 1.284 12 N -0.990 5.990 13 C 0.101 3.899 14 S 2.779 3.221 15 O -0.977 6.977 16 O -0.996 6.996 17 N -1.005 6.005 18 C 0.123 3.877 19 C -0.132 4.132 20 C -0.102 4.102 21 C -0.129 4.129 22 H 0.118 0.882 23 C 0.528 3.472 24 O -0.543 6.543 25 N -0.619 5.619 26 C 0.085 3.915 27 C 0.070 3.930 28 C 0.149 3.851 29 H 0.092 0.908 30 H 0.012 0.988 31 H 0.033 0.967 32 H 0.263 0.737 33 H 0.042 0.958 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.087 0.913 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.065 0.935 44 H 0.076 0.924 45 H 0.088 0.912 46 H 0.061 0.939 47 H 0.062 0.938 48 H 0.077 0.923 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.593 -6.875 -1.147 12.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.164 3.836 3 H 0.075 0.925 4 C -0.561 4.561 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.712 3.288 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.211 1.211 12 N -0.832 5.832 13 C -0.046 4.046 14 S 2.790 3.210 15 O -0.961 6.961 16 O -0.981 6.981 17 N -0.843 5.843 18 C -0.002 4.002 19 C -0.171 4.171 20 C -0.140 4.140 21 C -0.152 4.152 22 H 0.136 0.864 23 C 0.316 3.684 24 O -0.420 6.420 25 N -0.353 5.353 26 C -0.058 4.058 27 C -0.073 4.073 28 C 0.023 3.977 29 H 0.111 0.889 30 H 0.031 0.969 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.095 0.905 45 H 0.106 0.894 46 H 0.080 0.920 47 H 0.080 0.920 48 H 0.095 0.905 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.473 -5.706 -2.028 12.097 hybrid contribution 0.290 -0.797 1.679 1.881 sum 10.763 -6.503 -0.349 12.579 Atomic orbital electron populations 1.22063 0.98089 0.99569 1.00811 1.18720 0.91833 0.92662 0.80350 0.92513 1.21366 1.31835 1.12884 0.89988 0.91912 1.24907 0.95089 0.94915 0.98774 1.69880 1.36079 1.22506 1.23631 0.86695 0.78998 0.79661 0.83463 1.19451 1.20832 1.21059 1.57758 1.64362 1.21376 1.39753 1.21238 1.01728 0.81841 0.99759 1.01951 0.72342 0.73503 0.73245 1.93587 1.83628 1.32153 1.86733 1.93516 1.85946 1.76394 1.42200 1.58294 1.30484 1.35522 1.59970 1.21329 0.96218 0.87228 0.95471 1.21910 1.00274 0.97631 0.97298 1.21401 0.97384 0.95616 0.99561 1.21792 0.99511 0.96718 0.97132 0.86410 1.20603 0.79587 0.86318 0.81887 1.90657 1.48784 1.28386 1.74203 1.47676 1.59260 1.19929 1.08429 1.21601 0.97763 0.92790 0.93628 1.21999 0.99343 0.85144 1.00808 1.21052 0.98517 0.89841 0.88303 0.88906 0.96886 0.94829 0.92693 0.93958 0.90699 0.92198 0.89458 0.91518 0.90605 0.90756 0.91336 0.91602 0.92672 0.91575 0.90548 0.89385 0.92022 0.91951 0.90497 0.88700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 8.95 37.16 0.33 -3.03 16 2 C 0.27 6.22 2.62 -69.08 -0.18 6.04 16 3 H 0.06 1.49 6.91 -51.93 -0.36 1.14 16 4 C -0.52 -12.27 8.37 -34.44 -0.29 -12.56 16 5 H 0.06 1.42 7.65 -52.48 -0.40 1.02 16 6 C 0.07 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.88 -23.17 11.32 55.43 0.63 -22.54 16 8 Si 0.88 18.62 28.92 -169.99 -4.92 13.70 16 9 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 10 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 N -0.99 -19.70 3.12 -115.85 -0.36 -20.06 16 13 C 0.10 1.69 9.90 59.85 0.59 2.29 16 14 S 2.78 54.76 6.10 -107.50 -0.66 54.10 16 15 O -0.98 -22.62 15.42 -57.17 -0.88 -23.51 16 16 O -1.00 -20.11 15.46 -57.17 -0.88 -20.99 16 17 N -1.01 -16.55 3.35 -113.52 -0.38 -16.93 16 18 C 0.12 1.59 6.38 -3.71 -0.02 1.57 16 19 C -0.13 -1.46 6.08 -26.61 -0.16 -1.62 16 20 C -0.10 -1.21 4.91 -26.69 -0.13 -1.34 16 21 C -0.13 -1.97 1.80 -91.66 -0.16 -2.14 16 22 H 0.12 1.95 6.58 -51.93 -0.34 1.61 16 23 C 0.53 8.71 6.76 -10.99 -0.07 8.63 16 24 O -0.54 -10.38 15.57 5.56 0.09 -10.29 16 25 N -0.62 -8.93 3.27 -189.51 -0.62 -9.55 16 26 C 0.08 1.04 10.52 59.85 0.63 1.67 16 27 C 0.07 0.88 10.24 59.85 0.61 1.49 16 28 C 0.15 2.55 5.32 -3.71 -0.02 2.53 16 29 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 30 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.03 0.72 6.66 -51.93 -0.35 0.37 16 32 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 1.26 6.43 -51.93 -0.33 0.93 16 35 H 0.06 0.93 7.02 -51.93 -0.36 0.56 16 36 H 0.09 1.10 7.13 -51.93 -0.37 0.73 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.68 7.31 -51.93 -0.38 0.30 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.62 8.07 -51.93 -0.42 0.20 16 44 H 0.08 0.97 7.36 -51.93 -0.38 0.59 16 45 H 0.09 1.09 4.80 -51.93 -0.25 0.84 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.06 0.87 7.50 -51.93 -0.39 0.48 16 48 H 0.08 1.28 7.68 -51.93 -0.40 0.88 16 49 H 0.09 1.87 7.13 -51.93 -0.37 1.50 16 LS Contribution 388.71 15.07 5.86 5.86 Total: -1.00 -30.92 388.71 -9.03 -39.95 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -7.94 Total: 5.18 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: 1.03 Total: 5.07 kcal Atomic # 7 Polarization: -68.35 SS G_CDS: -0.73 Total: -69.08 kcal Atomic # 8 Polarization: -53.11 SS G_CDS: -1.68 Total: -54.79 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -4.92 Total: 13.70 kcal Atomic # 16 Polarization: 54.76 SS G_CDS: -0.66 Total: 54.10 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.92 -9.03 -39.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413462008.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.817 kcal (2) G-P(sol) polarization free energy of solvation -30.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds