Wall clock time and date at job start Wed Apr 1 2020 05:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46819 * 2 1 4 4 C 1.50697 * 109.46759 * 119.99738 * 2 1 3 5 5 H 1.08007 * 119.99613 * 119.99993 * 4 2 1 6 6 C 1.37878 * 120.00547 * 300.00257 * 4 2 1 7 7 N 1.31519 * 119.99687 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00451 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46771 * 359.97438 * 8 6 4 10 10 H 1.48489 * 109.47205 * 119.99610 * 8 6 4 11 11 H 1.48507 * 109.47045 * 240.00070 * 8 6 4 12 12 N 1.46491 * 109.47123 * 239.99844 * 2 1 3 13 13 C 1.46504 * 120.00120 * 300.00184 * 12 2 1 14 14 S 1.65600 * 119.99925 * 120.00352 * 12 2 1 15 15 O 1.42105 * 106.40162 * 336.45616 * 14 12 2 16 16 O 1.42104 * 106.40518 * 203.53837 * 14 12 2 17 17 N 1.65594 * 107.21944 * 89.99772 * 14 12 2 18 18 C 1.46930 * 120.63210 * 90.00352 * 17 14 12 19 19 C 1.53191 * 108.77518 * 233.58827 * 18 17 14 20 20 C 1.53044 * 109.31151 * 305.36339 * 19 18 17 21 21 C 1.53039 * 109.54057 * 61.36500 * 20 19 18 22 22 H 1.09004 * 109.52327 * 58.60304 * 21 20 19 23 23 C 1.50695 * 109.49632 * 178.68415 * 21 20 19 24 24 O 1.21283 * 120.00198 * 93.07573 * 23 21 20 25 25 N 1.34774 * 119.99885 * 273.07061 * 23 21 20 26 26 C 1.46507 * 119.99771 * 185.09303 * 25 23 21 27 27 C 1.46500 * 120.00172 * 5.09649 * 25 23 21 28 28 C 1.46927 * 120.63531 * 269.97941 * 17 14 12 29 29 H 1.08996 * 109.47009 * 300.00461 * 1 2 3 30 30 H 1.09004 * 109.46775 * 59.99570 * 1 2 3 31 31 H 1.08991 * 109.47159 * 179.97438 * 1 2 3 32 32 H 0.96995 * 120.00271 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.47133 * 269.99678 * 13 12 2 34 34 H 1.09001 * 109.46838 * 30.00296 * 13 12 2 35 35 H 1.08999 * 109.46737 * 150.00231 * 13 12 2 36 36 H 1.09005 * 109.58370 * 353.36795 * 18 17 14 37 37 H 1.08995 * 109.59029 * 113.79758 * 18 17 14 38 38 H 1.09003 * 109.49795 * 65.31066 * 19 18 17 39 39 H 1.08998 * 109.49935 * 185.40832 * 19 18 17 40 40 H 1.09000 * 109.45560 * 301.34261 * 20 19 18 41 41 H 1.09005 * 109.44640 * 181.38092 * 20 19 18 42 42 H 1.08999 * 109.47246 * 90.00264 * 26 25 23 43 43 H 1.09003 * 109.46970 * 209.99876 * 26 25 23 44 44 H 1.09000 * 109.47185 * 330.00090 * 26 25 23 45 45 H 1.09000 * 109.46876 * 5.23974 * 27 25 23 46 46 H 1.09001 * 109.47100 * 125.24664 * 27 25 23 47 47 H 1.09005 * 109.46833 * 245.24490 * 27 25 23 48 48 H 1.08998 * 109.58626 * 246.20586 * 28 17 14 49 49 H 1.09004 * 109.58098 * 6.62552 * 28 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9426 0.8297 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.1473 -2.2863 3.6039 10 1 3.1471 -0.1858 4.8161 11 1 1.1675 -1.5866 4.8166 12 7 2.0184 -0.6906 -1.1961 13 6 1.6644 -2.0932 -1.4279 14 16 2.9705 0.1142 -2.2861 15 8 2.6904 1.4973 -2.1192 16 8 2.8230 -0.5646 -3.5258 17 7 4.5438 -0.1042 -1.8178 18 6 5.3221 -1.2458 -2.3177 19 6 5.9049 -2.0064 -1.1224 20 6 6.7022 -1.0376 -0.2460 21 6 5.7726 0.0563 0.2843 22 1 4.9633 -0.3987 0.8554 23 6 6.5517 0.9912 1.1730 24 8 7.0485 1.9957 0.7092 25 7 6.6964 0.7111 2.4834 26 6 7.3568 1.6729 3.3694 27 6 6.1934 -0.5552 3.0217 28 6 5.1882 0.8402 -0.8950 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 0.7086 1.1613 3.4843 33 1 2.4157 -2.7377 -0.9716 34 1 0.6904 -2.3001 -0.9846 35 1 1.6239 -2.2852 -2.5001 36 1 4.6727 -1.9079 -2.8906 37 1 6.1321 -0.8862 -2.9521 38 1 5.0944 -2.4424 -0.5383 39 1 6.5626 -2.7983 -1.4807 40 1 7.4972 -0.5834 -0.8374 41 1 7.1383 -1.5814 0.5920 42 1 6.6141 2.3544 3.7840 43 1 7.8526 1.1390 4.1802 44 1 8.0952 2.2408 2.8034 45 1 5.8217 -1.1748 2.2056 46 1 7.0002 -1.0774 3.5361 47 1 5.3840 -0.3555 3.7239 48 1 5.9873 1.3700 -1.4135 49 1 4.4506 1.5546 -0.5294 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413462008.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:57 Heat of formation + Delta-G solvation = -125.403735 kcal Electronic energy + Delta-G solvation = -32408.248610 eV Core-core repulsion = 28303.574773 eV Total energy + Delta-G solvation = -4104.673837 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.35769 -38.84402 -38.42388 -37.85600 -36.93009 -36.60116 -34.46081 -33.62272 -32.31089 -30.87778 -29.01402 -27.33388 -27.25790 -26.92791 -25.55853 -24.51220 -22.57237 -21.81853 -20.05873 -19.82234 -18.87496 -18.42415 -18.27421 -18.02985 -17.15948 -17.11206 -16.70670 -16.47284 -15.66880 -15.53847 -15.21569 -14.95112 -14.83390 -14.79333 -14.70021 -14.41147 -13.90544 -13.74961 -13.64019 -13.51219 -13.43699 -13.39242 -13.18299 -13.16893 -13.00169 -12.97008 -12.88393 -12.73193 -12.57789 -12.37246 -12.22452 -12.10024 -11.97587 -11.90916 -11.82935 -11.45169 -11.08156 -10.76795 -10.46896 -9.99792 -9.71754 -9.59411 -8.03617 -6.18217 -0.36003 1.43929 1.49181 1.52015 1.58748 1.88876 2.11726 2.47663 2.55152 3.25720 3.30722 3.46070 3.73890 3.79371 3.98596 4.12220 4.17689 4.22858 4.31968 4.39531 4.44814 4.49135 4.56913 4.68553 4.74655 4.77916 4.83035 4.84244 4.85967 4.87196 4.95846 4.99466 5.01305 5.05331 5.14070 5.19101 5.20690 5.24490 5.44726 5.47977 5.56785 5.66216 5.80108 5.90921 6.13753 6.27191 6.33663 6.91091 7.08462 7.51227 9.01350 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008621 B = 0.007189 C = 0.004780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3247.059843 B = 3894.048569 C = 5856.023574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.274 3.726 3 H 0.015 0.985 4 C -0.514 4.514 5 H 0.078 0.922 6 C 0.016 3.984 7 N -0.922 5.922 8 Si 0.941 3.059 9 H -0.239 1.239 10 H -0.282 1.282 11 H -0.295 1.295 12 N -0.994 5.994 13 C 0.095 3.905 14 S 2.789 3.211 15 O -1.021 7.021 16 O -1.001 7.001 17 N -0.999 5.999 18 C 0.110 3.890 19 C -0.125 4.125 20 C -0.096 4.096 21 C -0.122 4.122 22 H 0.106 0.894 23 C 0.520 3.480 24 O -0.580 6.580 25 N -0.620 5.620 26 C 0.081 3.919 27 C 0.065 3.935 28 C 0.152 3.848 29 H 0.068 0.932 30 H 0.013 0.987 31 H 0.048 0.952 32 H 0.259 0.741 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.112 0.888 40 H 0.072 0.928 41 H 0.089 0.911 42 H 0.045 0.955 43 H 0.102 0.898 44 H 0.068 0.932 45 H 0.090 0.910 46 H 0.099 0.901 47 H 0.047 0.953 48 H 0.079 0.921 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.810 -10.385 -0.636 16.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.169 3.831 3 H 0.033 0.967 4 C -0.553 4.553 5 H 0.096 0.904 6 C -0.183 4.183 7 N -0.561 5.561 8 Si 0.767 3.233 9 H -0.162 1.162 10 H -0.208 1.208 11 H -0.222 1.222 12 N -0.836 5.836 13 C -0.050 4.050 14 S 2.800 3.200 15 O -1.005 7.005 16 O -0.984 6.984 17 N -0.839 5.839 18 C -0.014 4.014 19 C -0.163 4.163 20 C -0.134 4.134 21 C -0.145 4.145 22 H 0.124 0.876 23 C 0.308 3.692 24 O -0.461 6.461 25 N -0.352 5.352 26 C -0.061 4.061 27 C -0.078 4.078 28 C 0.025 3.975 29 H 0.087 0.913 30 H 0.032 0.968 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.112 0.888 37 H 0.103 0.897 38 H 0.090 0.910 39 H 0.130 0.870 40 H 0.090 0.910 41 H 0.108 0.892 42 H 0.064 0.936 43 H 0.121 0.879 44 H 0.087 0.913 45 H 0.109 0.891 46 H 0.118 0.882 47 H 0.066 0.934 48 H 0.097 0.903 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.693 -9.274 -1.523 15.793 hybrid contribution -0.397 0.325 1.469 1.556 sum 12.296 -8.948 -0.054 15.207 Atomic orbital electron populations 1.21963 0.98256 1.00110 0.99666 1.18388 0.91678 0.91133 0.81855 0.96670 1.21574 1.31145 1.12755 0.89829 0.90412 1.25689 0.95303 0.95468 1.01828 1.70050 1.37808 1.24345 1.23910 0.85781 0.78397 0.79526 0.79638 1.16215 1.20810 1.22234 1.57617 1.64929 1.22603 1.38435 1.21466 1.02405 0.80172 1.00982 1.01433 0.73022 0.72443 0.73114 1.93528 1.84687 1.35045 1.87237 1.93499 1.86425 1.76177 1.42347 1.58021 1.29368 1.36659 1.59849 1.21749 0.96502 0.86220 0.96911 1.21914 1.00595 0.97799 0.96014 1.21443 0.96698 0.94662 1.00588 1.21727 0.99723 0.97150 0.95896 0.87593 1.20876 0.79438 0.86009 0.82855 1.90634 1.50540 1.29798 1.75097 1.47835 1.58545 1.20871 1.07958 1.21744 0.97391 0.92894 0.94120 1.22186 1.00338 0.84429 1.00803 1.20916 0.97329 0.89854 0.89382 0.91308 0.96811 0.93302 0.93175 0.91633 0.90835 0.90797 0.88755 0.89729 0.90958 0.86977 0.90970 0.89207 0.93645 0.87936 0.91347 0.89127 0.88218 0.93402 0.90325 0.92616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.63 8.95 71.98 0.64 -5.98 16 2 C 0.27 13.01 2.62 44.25 0.12 13.13 16 3 H 0.02 0.86 6.91 -2.39 -0.02 0.85 16 4 C -0.51 -23.97 8.37 25.60 0.21 -23.76 16 5 H 0.08 3.33 7.65 -2.91 -0.02 3.31 16 6 C 0.02 0.80 5.30 84.65 0.45 1.25 16 7 N -0.92 -49.87 11.32 21.45 0.24 -49.63 16 8 Si 0.94 37.32 28.92 68.60 1.98 39.30 16 9 H -0.24 -8.24 7.11 99.48 0.71 -7.53 16 10 H -0.28 -11.09 7.11 99.48 0.71 -10.39 16 11 H -0.30 -12.23 7.11 99.48 0.71 -11.52 16 12 N -0.99 -39.26 3.12 -520.45 -1.62 -40.88 16 13 C 0.09 2.99 9.90 127.77 1.27 4.26 16 14 S 2.79 110.78 6.10 -56.49 -0.34 110.44 16 15 O -1.02 -49.72 15.42 -128.00 -1.97 -51.69 16 16 O -1.00 -39.47 15.46 -128.00 -1.98 -41.45 16 17 N -1.00 -32.28 3.35 -513.06 -1.72 -34.00 16 18 C 0.11 2.53 6.38 86.36 0.55 3.09 16 19 C -0.12 -2.22 6.08 30.67 0.19 -2.03 16 20 C -0.10 -1.96 4.91 30.62 0.15 -1.81 16 21 C -0.12 -3.61 1.80 -11.47 -0.02 -3.63 16 22 H 0.11 3.39 6.58 -2.39 -0.02 3.38 16 23 C 0.52 16.91 6.76 87.66 0.59 17.50 16 24 O -0.58 -22.58 15.57 -3.04 -0.05 -22.62 16 25 N -0.62 -16.88 3.27 -871.87 -2.85 -19.74 16 26 C 0.08 1.87 10.52 127.77 1.34 3.22 16 27 C 0.06 1.42 10.24 127.77 1.31 2.72 16 28 C 0.15 5.30 5.32 86.36 0.46 5.76 16 29 H 0.07 3.60 6.07 -2.39 -0.01 3.59 16 30 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.05 2.09 6.66 -2.39 -0.02 2.08 16 32 H 0.26 13.53 8.31 -92.71 -0.77 12.76 16 33 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.07 2.33 6.43 -2.39 -0.02 2.32 16 35 H 0.07 2.12 7.02 -2.39 -0.02 2.10 16 36 H 0.09 2.07 7.13 -2.38 -0.02 2.05 16 37 H 0.08 1.67 8.14 -2.39 -0.02 1.66 16 38 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.09 1.45 7.31 -2.38 -0.02 1.43 16 42 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.10 1.61 8.07 -2.39 -0.02 1.59 16 44 H 0.07 1.70 7.36 -2.39 -0.02 1.68 16 45 H 0.09 1.93 4.80 -2.39 -0.01 1.92 16 46 H 0.10 1.44 8.14 -2.39 -0.02 1.43 16 47 H 0.05 1.21 7.50 -2.38 -0.02 1.19 16 48 H 0.08 2.68 7.68 -2.39 -0.02 2.66 16 49 H 0.06 2.37 7.13 -2.39 -0.02 2.35 16 Total: -1.00 -70.09 388.71 -0.11 -70.20 By element: Atomic # 1 Polarization: 25.44 SS G_CDS: 0.94 Total: 26.38 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: 7.26 Total: 13.70 kcal Atomic # 7 Polarization: -138.29 SS G_CDS: -5.95 Total: -144.25 kcal Atomic # 8 Polarization: -111.77 SS G_CDS: -4.00 Total: -115.77 kcal Atomic # 14 Polarization: 37.32 SS G_CDS: 1.98 Total: 39.30 kcal Atomic # 16 Polarization: 110.78 SS G_CDS: -0.34 Total: 110.44 kcal Total: -70.09 -0.11 -70.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413462008.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.204 kcal (2) G-P(sol) polarization free energy of solvation -70.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds