Wall clock time and date at job start Wed Apr 1 2020 05:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47357 * 2 1 4 4 C 1.50703 * 109.46944 * 240.00382 * 2 1 3 5 5 H 1.08005 * 119.99909 * 245.76615 * 4 2 1 6 6 C 1.37869 * 120.00178 * 65.48302 * 4 2 1 7 7 N 1.31519 * 120.00174 * 355.36489 * 6 4 2 8 8 Si 1.86799 * 120.00174 * 175.36398 * 6 4 2 9 9 H 1.48500 * 109.47222 * 94.99781 * 8 6 4 10 10 H 1.48496 * 109.47374 * 215.00132 * 8 6 4 11 11 H 1.48506 * 109.46968 * 335.00113 * 8 6 4 12 12 N 1.46503 * 109.46971 * 120.00390 * 2 1 3 13 13 C 1.46495 * 120.00272 * 60.00116 * 12 2 1 14 14 S 1.65602 * 119.99749 * 239.99722 * 12 2 1 15 15 O 1.42102 * 106.40246 * 203.54351 * 14 12 2 16 16 O 1.42105 * 106.40322 * 336.46054 * 14 12 2 17 17 N 1.65592 * 107.21992 * 89.99895 * 14 12 2 18 18 C 1.46507 * 119.99684 * 89.99765 * 17 14 12 19 19 C 1.46787 * 120.00427 * 270.00125 * 17 14 12 20 20 H 1.09969 * 107.93140 * 44.78211 * 19 17 14 21 21 C 1.52397 * 109.63950 * 162.97710 * 19 17 14 22 22 C 1.52380 * 112.36954 * 76.27226 * 21 19 17 23 23 N 1.45902 * 112.29171 * 47.45134 * 22 21 19 24 24 C 1.46286 * 113.84462 * 68.08089 * 23 22 21 25 25 C 1.52729 * 111.51738 * 289.02358 * 24 23 22 26 26 O 1.42204 * 111.72018 * 314.05619 * 25 24 23 27 27 C 1.42233 * 117.18282 * 47.64342 * 26 25 24 28 28 H 1.09896 * 108.95280 * 186.55018 * 27 26 25 29 29 C 1.46863 * 111.57640 * 301.33833 * 23 22 21 30 30 H 1.09002 * 109.47008 * 294.68016 * 1 2 3 31 31 H 1.09001 * 109.47041 * 54.68169 * 1 2 3 32 32 H 1.09001 * 109.47247 * 174.68101 * 1 2 3 33 33 H 0.96995 * 120.00268 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.47315 * 89.99400 * 13 12 2 35 35 H 1.08997 * 109.47223 * 210.00023 * 13 12 2 36 36 H 1.08999 * 109.46928 * 329.99295 * 13 12 2 37 37 H 1.09000 * 109.46754 * 95.43506 * 18 17 14 38 38 H 1.09007 * 109.46894 * 215.43091 * 18 17 14 39 39 H 1.08996 * 109.47090 * 335.43252 * 18 17 14 40 40 H 1.08398 * 111.33329 * 201.67122 * 21 19 17 41 41 H 1.10652 * 107.73616 * 317.80664 * 21 19 17 42 42 H 1.09664 * 109.02301 * 168.70032 * 22 21 19 43 43 H 1.09596 * 109.17662 * 285.98403 * 22 21 19 44 44 H 1.09470 * 109.42208 * 49.86588 * 24 23 22 45 45 H 1.09469 * 109.40687 * 168.19852 * 24 23 22 46 46 H 1.08236 * 111.25340 * 79.55284 * 25 24 23 47 47 H 1.10566 * 107.65004 * 195.98287 * 25 24 23 48 48 H 1.08977 * 109.78945 * 184.60580 * 29 23 22 49 49 H 1.08666 * 110.20369 * 305.75941 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5743 -1.6396 -1.1342 6 6 1.7950 -0.1770 -2.4796 7 7 1.0530 0.9018 -2.6039 8 14 2.5272 -0.9867 -3.9954 9 1 1.5314 -1.9131 -4.5916 10 1 2.8889 0.0568 -4.9881 11 1 3.7434 -1.7475 -3.6115 12 7 2.0183 -0.6907 1.1962 13 6 1.6644 -2.0933 1.4279 14 16 2.9704 0.1140 2.2862 15 8 3.7119 -0.8791 2.9814 16 8 3.5795 1.1828 1.5748 17 7 1.9608 0.8089 3.3998 18 6 1.5814 0.0696 4.6063 19 6 1.4460 2.1655 3.1780 20 1 1.1168 2.2358 2.1311 21 6 0.2458 2.4124 4.0841 22 6 0.6538 2.6735 5.5288 23 7 1.7356 3.6471 5.6310 24 6 1.3487 5.0038 5.2442 25 6 1.1255 5.1146 3.7374 26 8 2.1710 4.4901 3.0032 27 6 2.5588 3.1831 3.4086 28 1 3.4449 2.8793 2.8340 29 6 2.9289 3.2077 4.8963 30 1 -0.3633 0.4291 0.9338 31 1 -0.3633 0.5941 -0.8385 32 1 -0.3634 -1.0232 -0.0953 33 1 0.8863 1.2772 -3.4825 34 1 2.4157 -2.7378 0.9715 35 1 1.6238 -2.2853 2.5001 36 1 0.6904 -2.3002 0.9846 37 1 2.2425 0.3492 5.4267 38 1 0.5518 0.3103 4.8712 39 1 1.6676 -1.0007 4.4188 40 1 -0.3778 3.2131 3.7033 41 1 -0.3798 1.4997 4.0711 42 1 -0.2170 3.0401 6.0855 43 1 0.9688 1.7305 5.9900 44 1 0.4268 5.2819 5.7650 45 1 2.1342 5.7053 5.5431 46 1 0.1544 4.7289 3.4552 47 1 1.1263 6.1890 3.4765 48 1 3.7430 3.9138 5.0586 49 1 3.2286 2.2165 5.2258 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001424115592.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:30 Heat of formation + Delta-G solvation = -83.706858 kcal Electronic energy + Delta-G solvation = -32497.035164 eV Core-core repulsion = 28394.169439 eV Total energy + Delta-G solvation = -4102.865725 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.07078 -36.80288 -36.71411 -36.17741 -35.41685 -35.23259 -32.57002 -31.56921 -31.10135 -29.20868 -28.87417 -26.20717 -25.58679 -25.13218 -24.18464 -23.04715 -22.00213 -20.75261 -19.73822 -18.20615 -17.38399 -17.04850 -16.49680 -16.25842 -16.10386 -16.04650 -15.53569 -15.22039 -14.92107 -14.74756 -14.18572 -13.89604 -13.56110 -13.47158 -13.32042 -13.10841 -12.86143 -12.64679 -12.21304 -12.12743 -11.97481 -11.96870 -11.80310 -11.59255 -11.49910 -11.39753 -11.37040 -11.26671 -11.24051 -11.04478 -10.85118 -10.80464 -10.55462 -10.34607 -10.27667 -10.01849 -9.88882 -9.25060 -8.88933 -8.49437 -8.07778 -7.98217 -6.08918 -4.14270 1.08424 3.27847 3.28957 3.35852 3.40771 3.69795 3.85538 3.98875 4.39910 4.50565 4.61005 4.65514 4.73968 4.80030 4.88446 4.95623 5.11175 5.14676 5.20956 5.23721 5.33102 5.41898 5.50217 5.52417 5.56801 5.65026 5.66109 5.71485 5.75847 5.86729 5.97739 6.07255 6.10684 6.14969 6.33505 6.55674 6.62389 6.74616 6.75967 6.83606 6.97823 6.99286 7.36123 7.41722 7.59148 7.77164 7.98327 8.25167 8.87930 9.51581 10.97875 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016026 B = 0.004229 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.708552 B = 6619.633478 C = 7334.741467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.268 3.732 3 H 0.061 0.939 4 C -0.521 4.521 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.889 5.889 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.989 5.989 13 C 0.110 3.890 14 S 2.774 3.226 15 O -0.991 6.991 16 O -0.966 6.966 17 N -1.007 6.007 18 C 0.087 3.913 19 C 0.142 3.858 20 H 0.089 0.911 21 C -0.166 4.166 22 C 0.053 3.947 23 N -0.540 5.540 24 C 0.030 3.970 25 C 0.017 3.983 26 O -0.358 6.358 27 C 0.034 3.966 28 H 0.130 0.870 29 C 0.030 3.970 30 H 0.009 0.991 31 H 0.085 0.915 32 H 0.035 0.965 33 H 0.263 0.737 34 H 0.049 0.951 35 H 0.047 0.953 36 H 0.071 0.929 37 H 0.054 0.946 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.058 0.942 47 H 0.087 0.913 48 H 0.085 0.915 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.321 4.182 17.274 18.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.165 3.835 3 H 0.078 0.922 4 C -0.561 4.561 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.831 5.831 13 C -0.036 4.036 14 S 2.784 3.216 15 O -0.975 6.975 16 O -0.950 6.950 17 N -0.846 5.846 18 C -0.059 4.059 19 C 0.035 3.965 20 H 0.107 0.893 21 C -0.206 4.206 22 C -0.075 4.075 23 N -0.262 5.262 24 C -0.099 4.099 25 C -0.061 4.061 26 O -0.275 6.275 27 C -0.027 4.027 28 H 0.148 0.852 29 C -0.098 4.098 30 H 0.028 0.972 31 H 0.104 0.896 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.104 0.896 44 H 0.100 0.900 45 H 0.100 0.900 46 H 0.076 0.924 47 H 0.105 0.895 48 H 0.103 0.897 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.247 4.493 17.490 18.347 hybrid contribution -0.623 -0.633 -1.607 1.836 sum -3.871 3.860 15.882 16.797 Atomic orbital electron populations 1.22094 0.98435 1.00347 0.99315 1.18754 0.91079 0.93087 0.80575 0.92159 1.21300 1.35922 1.08707 0.90172 0.91962 1.24905 0.94855 0.95035 0.98981 1.69885 1.37312 1.21536 1.23964 0.86506 0.79564 0.79033 0.82463 1.20765 1.21017 1.19760 1.57769 1.70015 1.19731 1.35635 1.21146 1.01691 0.82172 0.98628 1.02240 0.73868 0.73146 0.72296 1.93541 1.68978 1.60295 1.74712 1.93583 1.73887 1.55443 1.72091 1.58346 1.68152 1.23094 1.35044 1.21670 1.01138 0.95844 0.87220 1.21070 0.93457 0.81252 1.00701 0.89327 1.22401 0.97501 1.03937 0.96730 1.22150 0.93999 0.96790 0.94520 1.60917 1.06248 1.01947 1.57084 1.22541 1.02427 0.90650 0.94254 1.23130 0.91583 0.98643 0.92788 1.87676 1.53813 1.28847 1.57173 1.23367 0.98835 0.82871 0.97581 0.85245 1.22704 0.92909 1.02485 0.91727 0.97176 0.89650 0.94608 0.92698 0.93244 0.93479 0.91014 0.92701 0.90747 0.91055 0.90011 0.90212 0.90773 0.89582 0.90039 0.90032 0.92410 0.89495 0.89658 0.89275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.82 37.16 0.33 -2.83 16 2 C 0.27 6.47 2.56 -69.08 -0.18 6.30 16 3 H 0.06 1.63 6.91 -51.93 -0.36 1.27 16 4 C -0.52 -14.02 8.34 -34.44 -0.29 -14.30 16 5 H 0.06 1.67 7.51 -52.48 -0.39 1.27 16 6 C 0.06 1.77 5.36 -17.82 -0.10 1.67 16 7 N -0.89 -24.80 11.61 55.43 0.64 -24.15 16 8 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.99 -20.31 3.12 -115.85 -0.36 -20.67 16 13 C 0.11 1.93 9.47 59.84 0.57 2.50 16 14 S 2.77 53.89 5.95 -107.50 -0.64 53.25 16 15 O -0.99 -20.21 16.17 -57.17 -0.92 -21.13 16 16 O -0.97 -22.01 13.82 -57.17 -0.79 -22.80 16 17 N -1.01 -14.85 2.92 -114.60 -0.33 -15.19 16 18 C 0.09 0.97 8.28 59.85 0.50 1.47 16 19 C 0.14 2.07 2.29 -68.32 -0.16 1.92 16 20 H 0.09 1.54 8.21 -51.38 -0.42 1.11 16 21 C -0.17 -1.81 4.17 -27.36 -0.11 -1.93 16 22 C 0.05 0.50 5.26 -4.68 -0.02 0.48 16 23 N -0.54 -5.79 4.92 -235.53 -1.16 -6.95 16 24 C 0.03 0.28 5.94 -4.30 -0.03 0.26 16 25 C 0.02 0.19 6.11 37.02 0.23 0.42 16 26 O -0.36 -5.55 10.44 -35.23 -0.37 -5.92 16 27 C 0.03 0.52 3.24 -26.80 -0.09 0.43 16 28 H 0.13 2.32 5.90 -51.42 -0.30 2.02 16 29 C 0.03 0.37 5.78 -3.68 -0.02 0.35 16 30 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.08 2.10 6.48 -51.93 -0.34 1.77 16 32 H 0.03 0.76 6.89 -51.93 -0.36 0.40 16 33 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.05 0.89 8.09 -51.93 -0.42 0.47 16 35 H 0.05 0.68 7.45 -51.93 -0.39 0.29 16 36 H 0.07 1.21 6.54 -51.93 -0.34 0.87 16 37 H 0.05 0.56 6.53 -51.93 -0.34 0.22 16 38 H 0.07 0.66 4.81 -51.93 -0.25 0.41 16 39 H 0.07 0.80 7.25 -51.93 -0.38 0.42 16 40 H 0.08 0.87 5.67 -52.27 -0.30 0.57 16 41 H 0.08 0.80 6.58 -50.98 -0.34 0.47 16 42 H 0.07 0.59 8.15 -51.55 -0.42 0.17 16 43 H 0.09 0.76 5.23 -51.59 -0.27 0.49 16 44 H 0.08 0.62 8.12 -51.66 -0.42 0.20 16 45 H 0.08 0.75 8.18 -51.66 -0.42 0.33 16 46 H 0.06 0.63 5.58 -52.36 -0.29 0.33 16 47 H 0.09 0.85 8.27 -51.03 -0.42 0.43 16 48 H 0.09 1.02 8.14 -51.94 -0.42 0.60 16 49 H 0.09 1.09 6.63 -52.12 -0.35 0.74 16 LS Contribution 365.02 15.07 5.50 5.50 Total: -1.00 -31.99 365.02 -10.32 -42.31 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -7.49 Total: 2.79 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: 0.63 Total: -3.26 kcal Atomic # 7 Polarization: -65.74 SS G_CDS: -1.21 Total: -66.95 kcal Atomic # 8 Polarization: -47.77 SS G_CDS: -2.08 Total: -49.86 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 53.89 SS G_CDS: -0.64 Total: 53.25 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.99 -10.32 -42.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001424115592.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.397 kcal (2) G-P(sol) polarization free energy of solvation -31.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds