Wall clock time and date at job start Wed Apr 1 2020 05:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47357 * 2 1 4 4 C 1.50703 * 109.46944 * 240.00382 * 2 1 3 5 5 H 1.08005 * 119.99909 * 245.76615 * 4 2 1 6 6 C 1.37869 * 120.00178 * 65.48302 * 4 2 1 7 7 N 1.31519 * 120.00174 * 355.36489 * 6 4 2 8 8 Si 1.86799 * 120.00174 * 175.36398 * 6 4 2 9 9 H 1.48500 * 109.47222 * 94.99781 * 8 6 4 10 10 H 1.48496 * 109.47374 * 215.00132 * 8 6 4 11 11 H 1.48506 * 109.46968 * 335.00113 * 8 6 4 12 12 N 1.46503 * 109.46971 * 120.00390 * 2 1 3 13 13 C 1.46495 * 120.00272 * 60.00116 * 12 2 1 14 14 S 1.65602 * 119.99749 * 239.99722 * 12 2 1 15 15 O 1.42102 * 106.40246 * 203.54351 * 14 12 2 16 16 O 1.42105 * 106.40322 * 336.46054 * 14 12 2 17 17 N 1.65592 * 107.21992 * 89.99895 * 14 12 2 18 18 C 1.46507 * 119.99684 * 89.99765 * 17 14 12 19 19 C 1.46787 * 120.00427 * 270.00125 * 17 14 12 20 20 H 1.09969 * 107.93140 * 44.78211 * 19 17 14 21 21 C 1.52397 * 109.63950 * 162.97710 * 19 17 14 22 22 C 1.52380 * 112.36954 * 76.27226 * 21 19 17 23 23 N 1.45902 * 112.29171 * 47.45134 * 22 21 19 24 24 C 1.46286 * 113.84462 * 68.08089 * 23 22 21 25 25 C 1.52729 * 111.51738 * 289.02358 * 24 23 22 26 26 O 1.42204 * 111.72018 * 314.05619 * 25 24 23 27 27 C 1.42233 * 117.18282 * 47.64342 * 26 25 24 28 28 H 1.09896 * 108.95280 * 186.55018 * 27 26 25 29 29 C 1.46863 * 111.57640 * 301.33833 * 23 22 21 30 30 H 1.09002 * 109.47008 * 294.68016 * 1 2 3 31 31 H 1.09001 * 109.47041 * 54.68169 * 1 2 3 32 32 H 1.09001 * 109.47247 * 174.68101 * 1 2 3 33 33 H 0.96995 * 120.00268 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.47315 * 89.99400 * 13 12 2 35 35 H 1.08997 * 109.47223 * 210.00023 * 13 12 2 36 36 H 1.08999 * 109.46928 * 329.99295 * 13 12 2 37 37 H 1.09000 * 109.46754 * 95.43506 * 18 17 14 38 38 H 1.09007 * 109.46894 * 215.43091 * 18 17 14 39 39 H 1.08996 * 109.47090 * 335.43252 * 18 17 14 40 40 H 1.08398 * 111.33329 * 201.67122 * 21 19 17 41 41 H 1.10652 * 107.73616 * 317.80664 * 21 19 17 42 42 H 1.09664 * 109.02301 * 168.70032 * 22 21 19 43 43 H 1.09596 * 109.17662 * 285.98403 * 22 21 19 44 44 H 1.09470 * 109.42208 * 49.86588 * 24 23 22 45 45 H 1.09469 * 109.40687 * 168.19852 * 24 23 22 46 46 H 1.08236 * 111.25340 * 79.55284 * 25 24 23 47 47 H 1.10566 * 107.65004 * 195.98287 * 25 24 23 48 48 H 1.08977 * 109.78945 * 184.60580 * 29 23 22 49 49 H 1.08666 * 110.20369 * 305.75941 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5743 -1.6396 -1.1342 6 6 1.7950 -0.1770 -2.4796 7 7 1.0530 0.9018 -2.6039 8 14 2.5272 -0.9867 -3.9954 9 1 1.5314 -1.9131 -4.5916 10 1 2.8889 0.0568 -4.9881 11 1 3.7434 -1.7475 -3.6115 12 7 2.0183 -0.6907 1.1962 13 6 1.6644 -2.0933 1.4279 14 16 2.9704 0.1140 2.2862 15 8 3.7119 -0.8791 2.9814 16 8 3.5795 1.1828 1.5748 17 7 1.9608 0.8089 3.3998 18 6 1.5814 0.0696 4.6063 19 6 1.4460 2.1655 3.1780 20 1 1.1168 2.2358 2.1311 21 6 0.2458 2.4124 4.0841 22 6 0.6538 2.6735 5.5288 23 7 1.7356 3.6471 5.6310 24 6 1.3487 5.0038 5.2442 25 6 1.1255 5.1146 3.7374 26 8 2.1710 4.4901 3.0032 27 6 2.5588 3.1831 3.4086 28 1 3.4449 2.8793 2.8340 29 6 2.9289 3.2077 4.8963 30 1 -0.3633 0.4291 0.9338 31 1 -0.3633 0.5941 -0.8385 32 1 -0.3634 -1.0232 -0.0953 33 1 0.8863 1.2772 -3.4825 34 1 2.4157 -2.7378 0.9715 35 1 1.6238 -2.2853 2.5001 36 1 0.6904 -2.3002 0.9846 37 1 2.2425 0.3492 5.4267 38 1 0.5518 0.3103 4.8712 39 1 1.6676 -1.0007 4.4188 40 1 -0.3778 3.2131 3.7033 41 1 -0.3798 1.4997 4.0711 42 1 -0.2170 3.0401 6.0855 43 1 0.9688 1.7305 5.9900 44 1 0.4268 5.2819 5.7650 45 1 2.1342 5.7053 5.5431 46 1 0.1544 4.7289 3.4552 47 1 1.1263 6.1890 3.4765 48 1 3.7430 3.9138 5.0586 49 1 3.2286 2.2165 5.2258 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001424115592.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:29 Heat of formation + Delta-G solvation = -109.275007 kcal Electronic energy + Delta-G solvation = -32498.143882 eV Core-core repulsion = 28394.169439 eV Total energy + Delta-G solvation = -4103.974443 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.04893 -38.43844 -37.93567 -37.78998 -36.93996 -36.33914 -34.54035 -32.56228 -32.02604 -31.00314 -29.84563 -27.33220 -27.27660 -26.87431 -25.13511 -23.99235 -23.04526 -22.48143 -20.83049 -19.63699 -18.83623 -18.62274 -18.18895 -17.47465 -17.29817 -17.10059 -16.81416 -16.46303 -16.32997 -15.90914 -15.51504 -15.19329 -14.88932 -14.81369 -14.58494 -14.34779 -14.27598 -13.77517 -13.71993 -13.47878 -13.22027 -13.19105 -13.07330 -13.05348 -12.99516 -12.85797 -12.76811 -12.64946 -12.59386 -12.38164 -12.28401 -12.24901 -12.22345 -11.92614 -11.77407 -11.26976 -11.16423 -10.85600 -10.56684 -10.02997 -9.67984 -8.99571 -8.15947 -6.28233 -0.43461 1.38268 1.41493 1.51166 1.91433 2.38404 2.48132 2.77263 2.93377 3.13813 3.28289 3.46673 3.60508 3.74505 3.89913 3.93555 4.01736 4.11989 4.16305 4.22679 4.37766 4.48760 4.54754 4.57315 4.61746 4.65313 4.71710 4.76621 4.79838 4.86153 4.91701 4.92342 4.93383 4.98757 5.07633 5.08446 5.12934 5.16346 5.19359 5.50384 5.57591 5.73263 5.84726 5.96387 6.08737 6.20563 6.25574 6.35379 6.79502 7.40699 8.89419 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016026 B = 0.004229 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.708552 B = 6619.633478 C = 7334.741467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.276 3.724 3 H 0.021 0.979 4 C -0.540 4.540 5 H 0.056 0.944 6 C 0.018 3.982 7 N -0.913 5.913 8 Si 0.953 3.047 9 H -0.268 1.268 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.998 5.998 13 C 0.103 3.897 14 S 2.785 3.215 15 O -1.002 7.002 16 O -1.010 7.010 17 N -0.994 5.994 18 C 0.074 3.926 19 C 0.145 3.855 20 H 0.049 0.951 21 C -0.160 4.160 22 C 0.052 3.948 23 N -0.536 5.536 24 C 0.032 3.968 25 C 0.008 3.992 26 O -0.391 6.391 27 C 0.030 3.970 28 H 0.088 0.912 29 C 0.038 3.962 30 H 0.036 0.964 31 H 0.057 0.943 32 H 0.044 0.956 33 H 0.264 0.736 34 H 0.039 0.961 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.107 0.893 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.104 0.896 43 H 0.098 0.902 44 H 0.112 0.888 45 H 0.084 0.916 46 H 0.063 0.937 47 H 0.100 0.900 48 H 0.084 0.916 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.070 3.649 19.877 21.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.171 3.829 3 H 0.039 0.961 4 C -0.579 4.579 5 H 0.075 0.925 6 C -0.182 4.182 7 N -0.552 5.552 8 Si 0.779 3.221 9 H -0.193 1.193 10 H -0.209 1.209 11 H -0.199 1.199 12 N -0.839 5.839 13 C -0.042 4.042 14 S 2.796 3.204 15 O -0.986 6.986 16 O -0.994 6.994 17 N -0.837 5.837 18 C -0.070 4.070 19 C 0.038 3.962 20 H 0.067 0.933 21 C -0.200 4.200 22 C -0.076 4.076 23 N -0.258 5.258 24 C -0.096 4.096 25 C -0.070 4.070 26 O -0.309 6.309 27 C -0.031 4.031 28 H 0.106 0.894 29 C -0.091 4.091 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.058 0.942 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.125 0.875 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.114 0.886 42 H 0.122 0.878 43 H 0.116 0.884 44 H 0.130 0.870 45 H 0.102 0.898 46 H 0.081 0.919 47 H 0.118 0.882 48 H 0.102 0.898 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.000 3.930 20.108 21.089 hybrid contribution -0.072 -0.404 -2.360 2.396 sum -5.073 3.526 17.747 18.792 Atomic orbital electron populations 1.21848 0.96766 1.00472 0.99502 1.18367 0.92166 0.91117 0.81226 0.96099 1.21638 1.35924 1.08732 0.91644 0.92540 1.25645 0.95253 0.95656 1.01660 1.70001 1.38175 1.22555 1.24503 0.85621 0.78950 0.78290 0.79271 1.19336 1.20939 1.19884 1.57672 1.70019 1.21059 1.35164 1.21361 1.01663 0.80277 1.00945 1.01662 0.73982 0.72397 0.72344 1.93513 1.69663 1.60737 1.74701 1.93534 1.75427 1.56794 1.73604 1.57907 1.67494 1.23227 1.35071 1.22069 1.03459 0.95687 0.85767 1.21045 0.94739 0.80689 0.99701 0.93282 1.22407 0.95616 1.04992 0.96982 1.22302 0.94594 0.97292 0.93400 1.60976 1.06057 1.02710 1.56046 1.22613 1.03975 0.90160 0.92838 1.23402 0.90619 0.98959 0.93996 1.87611 1.55388 1.29010 1.58874 1.23227 0.97781 0.83122 0.98935 0.89391 1.22590 0.94032 1.02760 0.89705 0.94534 0.92411 0.93736 0.92662 0.94216 0.90004 0.90272 0.91122 0.87518 0.90658 0.89517 0.88589 0.87828 0.88437 0.87035 0.89771 0.91904 0.88237 0.89753 0.88997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.64 8.82 71.98 0.63 -5.01 16 2 C 0.28 13.75 2.56 44.25 0.11 13.86 16 3 H 0.02 1.22 6.91 -2.39 -0.02 1.20 16 4 C -0.54 -29.79 8.34 25.60 0.21 -29.57 16 5 H 0.06 3.10 7.51 -2.91 -0.02 3.07 16 6 C 0.02 1.00 5.36 84.65 0.45 1.45 16 7 N -0.91 -52.44 11.61 21.44 0.25 -52.19 16 8 Si 0.95 44.18 29.54 68.60 2.03 46.20 16 9 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 10 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 11 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 12 N -1.00 -41.44 3.12 -520.45 -1.62 -43.07 16 13 C 0.10 3.51 9.47 127.77 1.21 4.72 16 14 S 2.79 110.61 5.95 -56.49 -0.34 110.27 16 15 O -1.00 -40.69 16.17 -128.00 -2.07 -42.76 16 16 O -1.01 -49.13 13.82 -128.00 -1.77 -50.90 16 17 N -0.99 -28.61 2.92 -516.48 -1.51 -30.12 16 18 C 0.07 1.43 8.28 127.77 1.06 2.49 16 19 C 0.15 4.23 2.29 44.59 0.10 4.33 16 20 H 0.05 1.80 8.21 -1.87 -0.02 1.78 16 21 C -0.16 -3.06 4.17 30.19 0.13 -2.93 16 22 C 0.05 0.76 5.26 86.29 0.45 1.21 16 23 N -0.54 -9.88 4.92 -899.08 -4.43 -14.30 16 24 C 0.03 0.52 5.94 86.33 0.51 1.03 16 25 C 0.01 0.17 6.11 71.89 0.44 0.60 16 26 O -0.39 -12.53 10.44 -148.98 -1.56 -14.08 16 27 C 0.03 0.96 3.24 30.55 0.10 1.05 16 28 H 0.09 3.45 5.90 -1.91 -0.01 3.44 16 29 C 0.04 0.90 5.78 86.42 0.50 1.40 16 30 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.06 2.91 6.48 -2.39 -0.02 2.89 16 32 H 0.04 1.86 6.89 -2.39 -0.02 1.85 16 33 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 34 H 0.04 1.41 8.09 -2.39 -0.02 1.39 16 35 H 0.08 2.19 7.45 -2.39 -0.02 2.17 16 36 H 0.08 2.56 6.54 -2.39 -0.02 2.54 16 37 H 0.07 1.19 6.53 -2.39 -0.02 1.18 16 38 H 0.11 1.40 4.81 -2.38 -0.01 1.39 16 39 H 0.07 1.44 7.25 -2.39 -0.02 1.42 16 40 H 0.09 1.61 5.67 -2.70 -0.02 1.60 16 41 H 0.10 1.54 6.58 -1.50 -0.01 1.53 16 42 H 0.10 1.03 8.15 -2.03 -0.02 1.02 16 43 H 0.10 1.24 5.23 -2.07 -0.01 1.23 16 44 H 0.11 1.20 8.12 -2.14 -0.02 1.18 16 45 H 0.08 1.34 8.18 -2.14 -0.02 1.32 16 46 H 0.06 1.26 5.58 -2.79 -0.02 1.25 16 47 H 0.10 1.83 8.27 -1.54 -0.01 1.82 16 48 H 0.08 2.01 8.14 -2.40 -0.02 1.99 16 49 H 0.09 2.12 6.63 -2.56 -0.02 2.10 16 Total: -1.00 -73.14 365.02 -4.11 -77.25 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 0.98 Total: 19.05 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: 5.92 Total: -5.35 kcal Atomic # 7 Polarization: -132.37 SS G_CDS: -7.31 Total: -139.68 kcal Atomic # 8 Polarization: -102.35 SS G_CDS: -5.39 Total: -107.75 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 16 Polarization: 110.61 SS G_CDS: -0.34 Total: 110.27 kcal Total: -73.14 -4.11 -77.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001424115592.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.027 kcal (2) G-P(sol) polarization free energy of solvation -73.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds