Wall clock time and date at job start Wed Apr 1 2020 05:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47008 * 2 1 4 4 C 1.50704 * 109.47128 * 240.00115 * 2 1 3 5 5 H 1.07995 * 119.99788 * 245.11881 * 4 2 1 6 6 C 1.37875 * 119.99883 * 65.11485 * 4 2 1 7 7 N 1.31519 * 119.99561 * 185.75018 * 6 4 2 8 8 Si 1.86795 * 120.00410 * 5.75097 * 6 4 2 9 9 H 1.48501 * 109.47402 * 270.00030 * 8 6 4 10 10 H 1.48501 * 109.47470 * 149.99680 * 8 6 4 11 11 H 1.48502 * 109.47110 * 29.99803 * 8 6 4 12 12 N 1.46495 * 109.47082 * 120.00214 * 2 1 3 13 13 C 1.46497 * 120.00281 * 54.67507 * 12 2 1 14 14 S 1.65602 * 119.99901 * 234.67755 * 12 2 1 15 15 O 1.42099 * 106.40232 * 209.45304 * 14 12 2 16 16 O 1.42104 * 106.40041 * 342.36670 * 14 12 2 17 17 N 1.65593 * 107.22087 * 95.90738 * 14 12 2 18 18 C 1.46500 * 120.00210 * 94.71755 * 17 14 12 19 19 C 1.46766 * 120.00392 * 274.71700 * 17 14 12 20 20 H 1.09544 * 108.55190 * 352.48776 * 19 17 14 21 21 C 1.52643 * 109.46352 * 233.50773 * 19 17 14 22 22 C 1.52624 * 111.21191 * 188.94882 * 21 19 17 23 23 N 1.46207 * 111.39818 * 51.16054 * 22 21 19 24 24 C 1.45928 * 113.57873 * 66.96344 * 23 22 21 25 25 C 1.52246 * 112.68025 * 285.53463 * 24 23 22 26 26 O 1.41381 * 113.83089 * 321.66548 * 25 24 23 27 27 C 1.41744 * 119.30112 * 39.25736 * 26 25 24 28 28 H 1.09843 * 109.35960 * 191.01015 * 27 26 25 29 29 C 1.46795 * 111.47965 * 299.83667 * 23 22 21 30 30 H 1.09000 * 109.47053 * 184.41256 * 1 2 3 31 31 H 1.08997 * 109.47066 * 304.41828 * 1 2 3 32 32 H 1.09007 * 109.47025 * 64.41873 * 1 2 3 33 33 H 0.96994 * 120.00377 * 354.98252 * 7 6 4 34 34 H 1.08999 * 109.47430 * 90.00144 * 13 12 2 35 35 H 1.08999 * 109.47105 * 210.00218 * 13 12 2 36 36 H 1.09004 * 109.47056 * 330.00101 * 13 12 2 37 37 H 1.08995 * 109.47705 * 95.60822 * 18 17 14 38 38 H 1.08999 * 109.47270 * 215.61727 * 18 17 14 39 39 H 1.09001 * 109.46869 * 335.61298 * 18 17 14 40 40 H 1.08461 * 110.83923 * 312.58241 * 21 19 17 41 41 H 1.10127 * 108.29290 * 70.12854 * 21 19 17 42 42 H 1.09424 * 109.17116 * 172.09824 * 22 21 19 43 43 H 1.09425 * 109.17526 * 290.23127 * 22 21 19 44 44 H 1.09742 * 109.26966 * 46.96639 * 24 23 22 45 45 H 1.09759 * 109.23377 * 164.15584 * 24 23 22 46 46 H 1.10734 * 107.73007 * 201.93741 * 25 24 23 47 47 H 1.09125 * 110.29573 * 87.02023 * 25 24 23 48 48 H 1.08847 * 110.02410 * 184.61867 * 29 23 22 49 49 H 1.08844 * 110.04879 * 306.03502 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5834 -1.6341 -1.1336 6 6 1.7885 -0.1810 -2.4800 7 7 2.1265 -0.8555 -3.5573 8 14 0.9779 1.4940 -2.6428 9 1 -0.4966 1.3272 -2.6988 10 1 1.4491 2.1532 -3.8873 11 1 1.3369 2.3336 -1.4716 12 7 2.0184 -0.6906 1.1961 13 6 1.5709 -2.0546 1.4884 14 16 3.0761 0.0706 2.2179 15 8 3.8672 -0.9506 2.8101 16 8 3.6291 1.1564 1.4868 17 7 2.1816 0.7379 3.4413 18 6 1.9936 0.0045 4.6954 19 6 1.5772 2.0642 3.2692 20 1 1.9431 2.4950 2.3309 21 6 1.9925 2.9666 4.4282 22 6 1.2164 4.2807 4.4105 23 7 -0.2239 4.0483 4.3135 24 6 -0.7929 3.4094 5.4957 25 6 -0.4485 1.9292 5.5863 26 8 -0.4567 1.2635 4.3390 27 6 0.0574 1.9254 3.1960 28 1 -0.2040 1.3533 2.2955 29 6 -0.5695 3.3204 3.0865 30 1 -0.3633 -1.0246 0.0791 31 1 -0.3633 0.5809 0.8477 32 1 -0.3633 0.4438 -0.9270 33 1 2.6123 -1.6908 -3.4740 34 1 2.2504 -2.7678 1.0218 35 1 1.5642 -2.2115 2.5670 36 1 0.5652 -2.1995 1.0939 37 1 2.7359 0.3324 5.4230 38 1 0.9937 0.1988 5.0836 39 1 2.1111 -1.0637 4.5127 40 1 1.8650 2.4584 5.3778 41 1 3.0638 3.1975 4.3198 42 1 1.4338 4.8388 5.3262 43 1 1.5459 4.8813 3.5572 44 1 -0.4251 3.9191 6.3953 45 1 -1.8845 3.5231 5.4780 46 1 -1.2035 1.4465 6.2368 47 1 0.5083 1.7935 6.0931 48 1 -1.6507 3.2319 2.9977 49 1 -0.1652 3.8386 2.2189 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001424115598.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:35 Heat of formation + Delta-G solvation = -85.474034 kcal Electronic energy + Delta-G solvation = -32816.817910 eV Core-core repulsion = 28713.875554 eV Total energy + Delta-G solvation = -4102.942355 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.19770 -36.88520 -36.42543 -36.16893 -36.02749 -35.32563 -32.57463 -32.24701 -31.03208 -29.89783 -28.54867 -26.34495 -25.86003 -24.59671 -24.43884 -23.05893 -22.34161 -20.61357 -19.25313 -18.59087 -17.62558 -17.51003 -16.90986 -16.82062 -16.41988 -15.96915 -15.82010 -15.39158 -15.13086 -14.26137 -14.03230 -13.89434 -13.68689 -13.47808 -13.29410 -13.24376 -13.03315 -12.89539 -12.49882 -12.30260 -12.20611 -12.15437 -11.92528 -11.84917 -11.75397 -11.65422 -11.56814 -11.42735 -11.29551 -11.10381 -11.06674 -10.81750 -10.72786 -10.40093 -10.07190 -9.86810 -9.77230 -9.03766 -8.82025 -8.51467 -8.27824 -8.11501 -6.45850 -4.14082 1.01556 3.24689 3.29682 3.41225 3.45615 3.53441 3.66485 3.94172 4.38736 4.42762 4.47122 4.54741 4.59858 4.72892 4.76868 4.88091 5.02679 5.07732 5.17840 5.21000 5.23960 5.28794 5.35442 5.46300 5.50743 5.52951 5.56840 5.62875 5.74734 5.77789 5.83182 5.96589 6.02347 6.12178 6.19125 6.27991 6.33407 6.46198 6.48593 6.65382 6.72354 6.84438 6.85732 7.26417 7.28177 7.46071 7.90385 8.35113 8.86359 9.56643 10.92030 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013522 B = 0.005133 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.239191 B = 5453.713281 C = 6391.469373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.239 3.761 3 H 0.054 0.946 4 C -0.597 4.597 5 H 0.063 0.937 6 C 0.030 3.970 7 N -0.908 5.908 8 Si 1.047 2.953 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.984 5.984 13 C 0.111 3.889 14 S 2.775 3.225 15 O -0.988 6.988 16 O -0.973 6.973 17 N -1.002 6.002 18 C 0.083 3.917 19 C 0.128 3.872 20 H 0.107 0.893 21 C -0.168 4.168 22 C 0.061 3.939 23 N -0.541 5.541 24 C 0.031 3.969 25 C 0.025 3.975 26 O -0.360 6.360 27 C 0.043 3.957 28 H 0.122 0.878 29 C 0.028 3.972 30 H 0.058 0.942 31 H 0.029 0.971 32 H 0.056 0.944 33 H 0.268 0.732 34 H 0.049 0.951 35 H 0.048 0.952 36 H 0.072 0.928 37 H 0.043 0.957 38 H 0.091 0.909 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.052 0.948 48 H 0.091 0.909 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.425 8.269 20.225 23.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.134 3.866 3 H 0.072 0.928 4 C -0.637 4.637 5 H 0.081 0.919 6 C -0.175 4.175 7 N -0.543 5.543 8 Si 0.876 3.124 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.201 1.201 12 N -0.825 5.825 13 C -0.035 4.035 14 S 2.786 3.214 15 O -0.972 6.972 16 O -0.957 6.957 17 N -0.840 5.840 18 C -0.063 4.063 19 C 0.021 3.979 20 H 0.125 0.875 21 C -0.208 4.208 22 C -0.067 4.067 23 N -0.263 5.263 24 C -0.098 4.098 25 C -0.054 4.054 26 O -0.278 6.278 27 C -0.017 4.017 28 H 0.139 0.861 29 C -0.100 4.100 30 H 0.077 0.923 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.062 0.938 38 H 0.109 0.891 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.101 0.899 44 H 0.099 0.901 45 H 0.099 0.901 46 H 0.102 0.898 47 H 0.070 0.930 48 H 0.110 0.890 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.302 9.644 19.014 22.536 hybrid contribution 0.787 -1.871 1.261 2.390 sum -6.515 7.773 20.276 22.671 Atomic orbital electron populations 1.22552 0.98990 1.01220 0.99253 1.19179 0.90598 0.93580 0.83235 0.92820 1.22267 1.39752 1.10871 0.90770 0.91865 1.25728 0.96559 1.03401 0.91844 1.70797 1.36724 1.16505 1.30249 0.83994 0.76188 0.75839 0.76341 1.20826 1.21272 1.20076 1.57544 1.65352 1.23279 1.36360 1.21163 1.01105 0.82993 0.98264 1.02165 0.73884 0.73183 0.72192 1.93542 1.66754 1.58674 1.78234 1.93574 1.76011 1.54869 1.71272 1.58179 1.70182 1.26136 1.29469 1.21685 1.03017 0.95795 0.85788 1.21327 0.93151 0.82957 1.00474 0.87496 1.22551 1.02034 0.96992 0.99253 1.22027 0.85474 0.95679 1.03549 1.60816 1.13269 1.49687 1.02480 1.22394 1.01120 0.92604 0.93647 1.22901 1.01740 0.94484 0.86226 1.87119 1.82574 1.42751 1.15362 1.23324 0.92408 0.96189 0.89766 0.86085 1.22756 1.01815 0.92256 0.93201 0.92342 0.95202 0.92503 0.92147 0.93182 0.93299 0.90913 0.93822 0.89101 0.91262 0.90568 0.90841 0.90270 0.89895 0.90056 0.90144 0.89755 0.93024 0.89033 0.88746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.16 8.77 37.16 0.33 -2.83 16 2 C 0.24 5.45 2.19 -69.08 -0.15 5.30 16 3 H 0.05 1.29 5.36 -51.93 -0.28 1.01 16 4 C -0.60 -16.43 8.84 -34.44 -0.30 -16.74 16 5 H 0.06 1.89 7.97 -52.49 -0.42 1.47 16 6 C 0.03 0.85 5.43 -17.82 -0.10 0.75 16 7 N -0.91 -27.65 13.70 55.43 0.76 -26.89 16 8 Si 1.05 24.73 25.33 -169.99 -4.31 20.43 16 9 H -0.28 -6.11 6.76 56.52 0.38 -5.73 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.27 -6.00 6.36 56.52 0.36 -5.64 16 12 N -0.98 -20.01 3.12 -115.85 -0.36 -20.37 16 13 C 0.11 1.98 9.73 59.85 0.58 2.56 16 14 S 2.78 54.67 5.99 -107.50 -0.64 54.02 16 15 O -0.99 -21.10 16.22 -57.17 -0.93 -22.03 16 16 O -0.97 -22.10 15.21 -57.17 -0.87 -22.97 16 17 N -1.00 -14.95 3.12 -114.53 -0.36 -15.30 16 18 C 0.08 1.03 8.86 59.85 0.53 1.56 16 19 C 0.13 1.70 2.48 -68.08 -0.17 1.53 16 20 H 0.11 1.60 6.91 -51.62 -0.36 1.24 16 21 C -0.17 -1.78 4.64 -27.11 -0.13 -1.90 16 22 C 0.06 0.55 5.78 -4.39 -0.03 0.53 16 23 N -0.54 -5.06 4.91 -235.69 -1.16 -6.21 16 24 C 0.03 0.24 5.86 -4.74 -0.03 0.21 16 25 C 0.02 0.21 5.22 36.77 0.19 0.40 16 26 O -0.36 -4.13 8.01 -35.07 -0.28 -4.41 16 27 C 0.04 0.52 3.41 -26.67 -0.09 0.43 16 28 H 0.12 1.63 5.38 -51.45 -0.28 1.35 16 29 C 0.03 0.29 5.87 -3.71 -0.02 0.27 16 30 H 0.06 1.11 6.31 -51.93 -0.33 0.78 16 31 H 0.03 0.48 5.31 -51.93 -0.28 0.20 16 32 H 0.06 1.16 4.36 -51.92 -0.23 0.93 16 33 H 0.27 8.17 8.72 -40.82 -0.36 7.82 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.05 0.73 7.65 -51.93 -0.40 0.33 16 36 H 0.07 1.22 6.08 -51.93 -0.32 0.90 16 37 H 0.04 0.49 8.03 -51.93 -0.42 0.08 16 38 H 0.09 1.02 3.75 -51.93 -0.19 0.82 16 39 H 0.07 0.89 7.17 -51.93 -0.37 0.52 16 40 H 0.08 0.75 4.52 -52.23 -0.24 0.52 16 41 H 0.07 0.81 8.24 -51.29 -0.42 0.38 16 42 H 0.08 0.59 8.10 -51.69 -0.42 0.17 16 43 H 0.08 0.75 8.18 -51.69 -0.42 0.33 16 44 H 0.08 0.52 8.08 -51.51 -0.42 0.10 16 45 H 0.08 0.60 8.21 -51.50 -0.42 0.17 16 46 H 0.08 0.61 8.28 -50.93 -0.42 0.18 16 47 H 0.05 0.43 5.12 -51.86 -0.27 0.17 16 48 H 0.09 0.88 8.13 -52.02 -0.42 0.46 16 49 H 0.09 0.95 8.12 -52.02 -0.42 0.53 16 LS Contribution 359.04 15.07 5.41 5.41 Total: -1.00 -33.57 359.04 -9.48 -43.05 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -7.36 Total: 3.18 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: 0.62 Total: -7.91 kcal Atomic # 7 Polarization: -67.66 SS G_CDS: -1.12 Total: -68.77 kcal Atomic # 8 Polarization: -47.33 SS G_CDS: -2.08 Total: -49.41 kcal Atomic # 14 Polarization: 24.73 SS G_CDS: -4.31 Total: 20.43 kcal Atomic # 16 Polarization: 54.67 SS G_CDS: -0.64 Total: 54.02 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.57 -9.48 -43.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001424115598.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.421 kcal (2) G-P(sol) polarization free energy of solvation -33.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds