Wall clock time and date at job start Wed Apr 1 2020 05:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47008 * 2 1 4 4 C 1.50704 * 109.47128 * 240.00115 * 2 1 3 5 5 H 1.07995 * 119.99788 * 245.11881 * 4 2 1 6 6 C 1.37875 * 119.99883 * 65.11485 * 4 2 1 7 7 N 1.31519 * 119.99561 * 185.75018 * 6 4 2 8 8 Si 1.86795 * 120.00410 * 5.75097 * 6 4 2 9 9 H 1.48501 * 109.47402 * 270.00030 * 8 6 4 10 10 H 1.48501 * 109.47470 * 149.99680 * 8 6 4 11 11 H 1.48502 * 109.47110 * 29.99803 * 8 6 4 12 12 N 1.46495 * 109.47082 * 120.00214 * 2 1 3 13 13 C 1.46497 * 120.00281 * 54.67507 * 12 2 1 14 14 S 1.65602 * 119.99901 * 234.67755 * 12 2 1 15 15 O 1.42099 * 106.40232 * 209.45304 * 14 12 2 16 16 O 1.42104 * 106.40041 * 342.36670 * 14 12 2 17 17 N 1.65593 * 107.22087 * 95.90738 * 14 12 2 18 18 C 1.46500 * 120.00210 * 94.71755 * 17 14 12 19 19 C 1.46766 * 120.00392 * 274.71700 * 17 14 12 20 20 H 1.09544 * 108.55190 * 352.48776 * 19 17 14 21 21 C 1.52643 * 109.46352 * 233.50773 * 19 17 14 22 22 C 1.52624 * 111.21191 * 188.94882 * 21 19 17 23 23 N 1.46207 * 111.39818 * 51.16054 * 22 21 19 24 24 C 1.45928 * 113.57873 * 66.96344 * 23 22 21 25 25 C 1.52246 * 112.68025 * 285.53463 * 24 23 22 26 26 O 1.41381 * 113.83089 * 321.66548 * 25 24 23 27 27 C 1.41744 * 119.30112 * 39.25736 * 26 25 24 28 28 H 1.09843 * 109.35960 * 191.01015 * 27 26 25 29 29 C 1.46795 * 111.47965 * 299.83667 * 23 22 21 30 30 H 1.09000 * 109.47053 * 184.41256 * 1 2 3 31 31 H 1.08997 * 109.47066 * 304.41828 * 1 2 3 32 32 H 1.09007 * 109.47025 * 64.41873 * 1 2 3 33 33 H 0.96994 * 120.00377 * 354.98252 * 7 6 4 34 34 H 1.08999 * 109.47430 * 90.00144 * 13 12 2 35 35 H 1.08999 * 109.47105 * 210.00218 * 13 12 2 36 36 H 1.09004 * 109.47056 * 330.00101 * 13 12 2 37 37 H 1.08995 * 109.47705 * 95.60822 * 18 17 14 38 38 H 1.08999 * 109.47270 * 215.61727 * 18 17 14 39 39 H 1.09001 * 109.46869 * 335.61298 * 18 17 14 40 40 H 1.08461 * 110.83923 * 312.58241 * 21 19 17 41 41 H 1.10127 * 108.29290 * 70.12854 * 21 19 17 42 42 H 1.09424 * 109.17116 * 172.09824 * 22 21 19 43 43 H 1.09425 * 109.17526 * 290.23127 * 22 21 19 44 44 H 1.09742 * 109.26966 * 46.96639 * 24 23 22 45 45 H 1.09759 * 109.23377 * 164.15584 * 24 23 22 46 46 H 1.10734 * 107.73007 * 201.93741 * 25 24 23 47 47 H 1.09125 * 110.29573 * 87.02023 * 25 24 23 48 48 H 1.08847 * 110.02410 * 184.61867 * 29 23 22 49 49 H 1.08844 * 110.04879 * 306.03502 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5834 -1.6341 -1.1336 6 6 1.7885 -0.1810 -2.4800 7 7 2.1265 -0.8555 -3.5573 8 14 0.9779 1.4940 -2.6428 9 1 -0.4966 1.3272 -2.6988 10 1 1.4491 2.1532 -3.8873 11 1 1.3369 2.3336 -1.4716 12 7 2.0184 -0.6906 1.1961 13 6 1.5709 -2.0546 1.4884 14 16 3.0761 0.0706 2.2179 15 8 3.8672 -0.9506 2.8101 16 8 3.6291 1.1564 1.4868 17 7 2.1816 0.7379 3.4413 18 6 1.9936 0.0045 4.6954 19 6 1.5772 2.0642 3.2692 20 1 1.9431 2.4950 2.3309 21 6 1.9925 2.9666 4.4282 22 6 1.2164 4.2807 4.4105 23 7 -0.2239 4.0483 4.3135 24 6 -0.7929 3.4094 5.4957 25 6 -0.4485 1.9292 5.5863 26 8 -0.4567 1.2635 4.3390 27 6 0.0574 1.9254 3.1960 28 1 -0.2040 1.3533 2.2955 29 6 -0.5695 3.3204 3.0865 30 1 -0.3633 -1.0246 0.0791 31 1 -0.3633 0.5809 0.8477 32 1 -0.3633 0.4438 -0.9270 33 1 2.6123 -1.6908 -3.4740 34 1 2.2504 -2.7678 1.0218 35 1 1.5642 -2.2115 2.5670 36 1 0.5652 -2.1995 1.0939 37 1 2.7359 0.3324 5.4230 38 1 0.9937 0.1988 5.0836 39 1 2.1111 -1.0637 4.5127 40 1 1.8650 2.4584 5.3778 41 1 3.0638 3.1975 4.3198 42 1 1.4338 4.8388 5.3262 43 1 1.5459 4.8813 3.5572 44 1 -0.4251 3.9191 6.3953 45 1 -1.8845 3.5231 5.4780 46 1 -1.2035 1.4465 6.2368 47 1 0.5083 1.7935 6.0931 48 1 -1.6507 3.2319 2.9977 49 1 -0.1652 3.8386 2.2189 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001424115598.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:34 Heat of formation + Delta-G solvation = -113.580739 kcal Electronic energy + Delta-G solvation = -32818.036708 eV Core-core repulsion = 28713.875554 eV Total energy + Delta-G solvation = -4104.161154 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.99704 -38.55235 -38.12181 -37.23740 -36.98339 -36.79186 -34.64971 -33.07706 -31.84221 -31.63916 -29.34563 -27.56498 -27.20006 -26.53884 -25.23486 -23.92621 -23.16362 -22.38189 -20.16586 -19.93231 -19.62614 -18.97337 -18.52745 -17.84111 -17.19794 -17.07971 -16.66087 -16.48772 -16.22162 -15.82263 -15.55785 -15.08086 -14.94614 -14.76808 -14.60867 -14.24237 -14.15265 -14.05218 -13.81251 -13.75255 -13.54742 -13.46658 -13.43305 -13.30218 -13.13056 -12.95339 -12.70144 -12.59793 -12.48599 -12.40888 -12.20100 -11.96406 -11.87088 -11.78483 -11.63334 -11.47653 -11.03990 -10.69569 -10.62056 -9.94172 -9.80613 -9.00948 -8.70140 -6.41121 -0.51839 1.40957 1.55501 1.68686 1.86529 2.42117 2.46940 2.68599 2.94540 3.08214 3.23040 3.49534 3.60438 3.77837 3.84064 3.96236 4.00757 4.01748 4.15798 4.28141 4.37588 4.42748 4.46599 4.54695 4.56314 4.59662 4.63435 4.65309 4.72585 4.74354 4.84106 4.90468 4.94157 4.94702 4.98509 5.02143 5.08731 5.10403 5.20834 5.28970 5.47336 5.59694 5.81854 5.91591 6.02198 6.02306 6.19698 6.50260 6.56699 7.39152 8.64147 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013522 B = 0.005133 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.239191 B = 5453.713281 C = 6391.469373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.241 3.759 3 H 0.046 0.954 4 C -0.599 4.599 5 H 0.020 0.980 6 C -0.023 4.023 7 N -0.942 5.942 8 Si 1.077 2.923 9 H -0.244 1.244 10 H -0.293 1.293 11 H -0.249 1.249 12 N -0.993 5.993 13 C 0.107 3.893 14 S 2.784 3.216 15 O -1.011 7.011 16 O -1.010 7.010 17 N -0.990 5.990 18 C 0.078 3.922 19 C 0.121 3.879 20 H 0.086 0.914 21 C -0.162 4.162 22 C 0.064 3.936 23 N -0.542 5.542 24 C 0.030 3.970 25 C 0.017 3.983 26 O -0.372 6.372 27 C 0.048 3.952 28 H 0.106 0.894 29 C 0.031 3.969 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.250 0.750 34 H 0.027 0.973 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.058 0.942 38 H 0.110 0.890 39 H 0.065 0.935 40 H 0.088 0.912 41 H 0.065 0.935 42 H 0.101 0.899 43 H 0.079 0.921 44 H 0.100 0.900 45 H 0.087 0.913 46 H 0.103 0.897 47 H 0.056 0.944 48 H 0.100 0.900 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.912 10.373 23.394 27.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.136 3.864 3 H 0.064 0.936 4 C -0.638 4.638 5 H 0.039 0.961 6 C -0.221 4.221 7 N -0.579 5.579 8 Si 0.898 3.102 9 H -0.169 1.169 10 H -0.220 1.220 11 H -0.173 1.173 12 N -0.833 5.833 13 C -0.039 4.039 14 S 2.796 3.204 15 O -0.995 6.995 16 O -0.993 6.993 17 N -0.831 5.831 18 C -0.067 4.067 19 C 0.014 3.986 20 H 0.104 0.896 21 C -0.203 4.203 22 C -0.065 4.065 23 N -0.264 5.264 24 C -0.098 4.098 25 C -0.061 4.061 26 O -0.290 6.290 27 C -0.012 4.012 28 H 0.123 0.877 29 C -0.098 4.098 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.046 0.954 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.077 0.923 38 H 0.128 0.872 39 H 0.084 0.916 40 H 0.106 0.894 41 H 0.084 0.916 42 H 0.119 0.881 43 H 0.098 0.902 44 H 0.119 0.881 45 H 0.105 0.895 46 H 0.121 0.879 47 H 0.074 0.926 48 H 0.119 0.881 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.793 11.716 22.217 26.959 hybrid contribution 1.634 -2.595 0.431 3.097 sum -8.159 9.121 22.648 25.743 Atomic orbital electron populations 1.22402 0.95792 1.02341 1.00811 1.18970 0.92884 0.92462 0.82129 0.93614 1.22515 1.38587 1.09421 0.93318 0.96112 1.27210 0.96836 1.06407 0.91623 1.70937 1.38924 1.16556 1.31491 0.83696 0.77694 0.71816 0.76985 1.16879 1.22037 1.17319 1.57496 1.65304 1.24329 1.36200 1.21307 1.00987 0.81389 1.00188 1.01621 0.73919 0.72446 0.72446 1.93502 1.67875 1.59549 1.78531 1.93519 1.77207 1.55940 1.72683 1.57784 1.69752 1.26797 1.28727 1.21923 1.04667 0.95393 0.84683 1.21573 0.94164 0.82063 1.00802 0.89623 1.22553 1.01857 0.97384 0.98483 1.22065 0.85149 0.94699 1.04580 1.60840 1.13242 1.49609 1.02694 1.22478 1.01580 0.92083 0.93641 1.23110 1.02696 0.95162 0.85096 1.87093 1.82368 1.43484 1.16045 1.23139 0.91223 0.97097 0.89774 0.87662 1.22750 1.02152 0.91098 0.93829 0.91954 0.91274 0.92901 0.94081 0.95445 0.90134 0.89739 0.92315 0.87170 0.91639 0.89372 0.91601 0.88084 0.90243 0.88135 0.89480 0.87939 0.92577 0.88134 0.88909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.75 8.77 71.98 0.63 -5.12 16 2 C 0.24 10.98 2.19 44.25 0.10 11.08 16 3 H 0.05 2.18 5.36 -2.39 -0.01 2.17 16 4 C -0.60 -34.07 8.84 25.60 0.23 -33.84 16 5 H 0.02 1.31 7.97 -2.91 -0.02 1.29 16 6 C -0.02 -1.35 5.43 84.65 0.46 -0.89 16 7 N -0.94 -59.70 13.70 21.45 0.29 -59.41 16 8 Si 1.08 49.05 25.33 68.60 1.74 50.79 16 9 H -0.24 -9.67 6.76 99.48 0.67 -8.99 16 10 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 11 H -0.25 -10.21 6.36 99.48 0.63 -9.57 16 12 N -0.99 -40.41 3.12 -520.45 -1.62 -42.03 16 13 C 0.11 3.79 9.73 127.77 1.24 5.03 16 14 S 2.78 109.68 5.99 -56.49 -0.34 109.35 16 15 O -1.01 -43.34 16.22 -128.00 -2.08 -45.42 16 16 O -1.01 -46.63 15.21 -128.00 -1.95 -48.58 16 17 N -0.99 -27.95 3.12 -516.25 -1.61 -29.56 16 18 C 0.08 1.74 8.86 127.77 1.13 2.87 16 19 C 0.12 2.97 2.48 44.75 0.11 3.08 16 20 H 0.09 2.50 6.91 -2.10 -0.01 2.48 16 21 C -0.16 -3.01 4.64 30.35 0.14 -2.87 16 22 C 0.06 0.94 5.78 86.31 0.50 1.44 16 23 N -0.54 -8.15 4.91 -899.58 -4.42 -12.57 16 24 C 0.03 0.34 5.86 86.24 0.51 0.85 16 25 C 0.02 0.22 5.22 71.73 0.37 0.59 16 26 O -0.37 -7.18 8.01 -148.42 -1.19 -8.37 16 27 C 0.05 1.03 3.41 30.63 0.10 1.14 16 28 H 0.11 2.54 5.38 -1.94 -0.01 2.53 16 29 C 0.03 0.54 5.87 86.43 0.51 1.04 16 30 H 0.06 2.24 6.31 -2.39 -0.02 2.23 16 31 H 0.07 2.03 5.31 -2.39 -0.01 2.01 16 32 H 0.05 2.01 4.36 -2.38 -0.01 2.00 16 33 H 0.25 16.21 8.72 -92.71 -0.81 15.40 16 34 H 0.03 1.06 8.14 -2.39 -0.02 1.05 16 35 H 0.08 2.30 7.65 -2.39 -0.02 2.29 16 36 H 0.08 2.76 6.08 -2.39 -0.01 2.75 16 37 H 0.06 1.16 8.03 -2.39 -0.02 1.14 16 38 H 0.11 2.08 3.75 -2.39 -0.01 2.07 16 39 H 0.06 1.54 7.17 -2.39 -0.02 1.52 16 40 H 0.09 1.42 4.52 -2.67 -0.01 1.41 16 41 H 0.07 1.33 8.24 -1.78 -0.01 1.31 16 42 H 0.10 1.09 8.10 -2.16 -0.02 1.07 16 43 H 0.08 1.24 8.18 -2.16 -0.02 1.22 16 44 H 0.10 0.79 8.08 -1.99 -0.02 0.77 16 45 H 0.09 0.91 8.21 -1.98 -0.02 0.89 16 46 H 0.10 1.00 8.28 -1.45 -0.01 0.99 16 47 H 0.06 0.69 5.12 -2.32 -0.01 0.67 16 48 H 0.10 1.59 8.13 -2.47 -0.02 1.57 16 49 H 0.09 1.64 8.12 -2.47 -0.02 1.62 16 Total: -1.00 -76.18 359.04 -4.29 -80.47 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: 0.85 Total: 20.92 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: 6.03 Total: -15.59 kcal Atomic # 7 Polarization: -136.21 SS G_CDS: -7.36 Total: -143.57 kcal Atomic # 8 Polarization: -97.16 SS G_CDS: -5.21 Total: -102.37 kcal Atomic # 14 Polarization: 49.05 SS G_CDS: 1.74 Total: 50.79 kcal Atomic # 16 Polarization: 109.68 SS G_CDS: -0.34 Total: 109.35 kcal Total: -76.18 -4.29 -80.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001424115598.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.110 kcal (2) G-P(sol) polarization free energy of solvation -76.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds