Wall clock time and date at job start Wed Apr 1 2020 05:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47022 * 2 1 4 4 N 1.46495 * 109.47405 * 120.00055 * 2 1 3 5 5 C 1.46499 * 120.00044 * 304.60880 * 4 2 1 6 6 C 1.53004 * 109.47000 * 274.42742 * 5 4 2 7 7 H 1.08996 * 110.21549 * 63.25315 * 6 5 4 8 8 C 1.54486 * 110.24643 * 185.18451 * 6 5 4 9 9 C 1.54628 * 101.76229 * 93.58247 * 8 6 5 10 10 C 1.51288 * 104.19796 * 24.80070 * 9 8 6 11 11 O 1.21274 * 124.94101 * 163.70796 * 10 9 8 12 12 N 1.34420 * 110.11243 * 343.74436 * 10 9 8 13 13 S 1.65608 * 120.00139 * 124.60537 * 4 2 1 14 14 O 1.42099 * 106.40126 * 156.46099 * 13 4 2 15 15 O 1.42093 * 106.39881 * 23.54210 * 13 4 2 16 16 N 1.65599 * 107.21821 * 270.00277 * 13 4 2 17 17 C 1.46496 * 119.99650 * 269.72594 * 16 13 4 18 18 C 1.46496 * 120.00121 * 90.00035 * 16 13 4 19 19 H 1.09003 * 109.47200 * 359.97438 * 18 16 13 20 20 C 1.52997 * 109.47274 * 119.99830 * 18 16 13 21 21 C 1.50699 * 109.46954 * 240.00051 * 18 16 13 22 22 H 1.08001 * 120.00108 * 359.97438 * 21 18 16 23 23 C 1.37881 * 119.99701 * 179.97438 * 21 18 16 24 24 N 1.31509 * 120.00197 * 0.02562 * 23 21 18 25 25 Si 1.86809 * 119.99585 * 179.97438 * 23 21 18 26 26 H 1.48493 * 109.47049 * 60.00677 * 25 23 21 27 27 H 1.48504 * 109.46684 * 180.02562 * 25 23 21 28 28 H 1.48493 * 109.47329 * 300.00031 * 25 23 21 29 29 H 1.08999 * 109.47242 * 299.99709 * 1 2 3 30 30 H 1.09003 * 109.47310 * 59.99915 * 1 2 3 31 31 H 1.08999 * 109.46647 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47242 * 240.00291 * 2 1 3 33 33 H 1.09007 * 109.46852 * 172.60351 * 3 2 1 34 34 H 1.08997 * 109.46988 * 292.59801 * 3 2 1 35 35 H 1.08994 * 109.46597 * 52.60462 * 3 2 1 36 36 H 1.08994 * 109.46938 * 34.42681 * 5 4 2 37 37 H 1.09001 * 109.47268 * 154.42746 * 5 4 2 38 38 H 1.08995 * 110.96532 * 211.69968 * 8 6 5 39 39 H 1.08993 * 110.96659 * 335.43076 * 8 6 5 40 40 H 1.09001 * 110.48338 * 143.47215 * 9 8 6 41 41 H 1.08997 * 110.48863 * 266.11727 * 9 8 6 42 42 H 0.97001 * 124.34851 * 179.58977 * 12 10 9 43 43 H 1.09000 * 109.47310 * 90.00084 * 17 16 13 44 44 H 1.09004 * 109.46848 * 209.99803 * 17 16 13 45 45 H 1.09000 * 109.47337 * 329.99601 * 17 16 13 46 46 H 1.08999 * 109.47392 * 179.97438 * 20 18 16 47 47 H 1.08997 * 109.47085 * 300.00137 * 20 18 16 48 48 H 1.09002 * 109.46700 * 60.00169 * 20 18 16 49 49 H 0.97003 * 120.00268 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.5832 -0.2517 2.5243 6 6 2.4857 0.8857 3.0067 7 1 2.3875 1.7493 2.3489 8 6 2.1258 1.2752 4.4577 9 6 3.1164 0.4103 5.2711 10 6 4.2620 0.1599 4.3153 11 8 5.3624 -0.2345 4.6381 12 7 3.8829 0.4392 3.0562 13 16 3.0623 -1.9675 1.0468 14 8 3.7639 -2.0583 2.2792 15 8 3.7115 -1.8104 -0.2074 16 7 2.1439 -3.3404 0.9293 17 6 1.7693 -4.0768 2.1390 18 6 1.7110 -3.8219 -0.3849 19 1 2.0861 -3.1522 -1.1588 20 6 2.2607 -5.2305 -0.6184 21 6 0.2053 -3.8551 -0.4367 22 1 -0.3715 -3.5487 0.4234 23 6 -0.4359 -4.2768 -1.5822 24 7 0.2665 -4.6504 -2.6294 25 14 -2.3024 -4.3187 -1.6462 26 1 -2.8363 -2.9518 -1.4187 27 1 -2.7411 -4.8067 -2.9784 28 1 -2.8135 -5.2315 -0.5923 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1220 1.4454 0.1323 34 1 1.7887 1.9167 -0.9487 35 1 1.5726 1.9931 0.8164 36 1 0.5528 0.0997 2.4713 37 1 1.6468 -1.0868 3.2219 38 1 2.3011 2.3368 4.6315 39 1 1.0943 1.0092 4.6884 40 1 3.4645 0.9534 6.1498 41 1 2.6505 -0.5309 5.5630 42 1 4.4589 0.3563 2.2801 43 1 0.8216 -3.6945 2.5183 44 1 1.6651 -5.1357 1.9021 45 1 2.5423 -3.9483 2.8966 46 1 1.9382 -5.5889 -1.5960 47 1 3.3497 -5.2064 -0.5809 48 1 1.8851 -5.8999 0.1556 49 1 -0.1846 -4.9474 -3.4351 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001463894935.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:21 Heat of formation + Delta-G solvation = -105.503256 kcal Electronic energy + Delta-G solvation = -32298.632163 eV Core-core repulsion = 28194.821275 eV Total energy + Delta-G solvation = -4103.810888 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.35421 -37.66506 -36.81387 -36.16800 -35.82484 -35.24693 -32.64019 -31.50298 -31.27225 -29.09547 -28.59516 -27.03650 -25.61051 -25.17545 -24.66866 -21.32585 -21.01544 -20.63901 -20.14074 -18.61421 -17.59179 -17.26474 -16.75025 -16.45647 -16.06963 -15.55314 -15.07465 -14.78311 -14.40659 -14.11195 -13.86742 -13.60632 -13.49978 -13.43471 -13.22958 -12.85934 -12.82994 -12.74602 -12.51771 -12.41469 -11.98676 -11.92026 -11.77885 -11.48263 -11.42245 -11.34200 -11.28892 -11.18457 -11.03667 -11.01023 -10.87512 -10.73478 -10.50345 -10.46596 -10.30819 -10.06908 -9.67298 -9.39564 -9.23919 -8.59230 -8.52703 -7.97011 -6.13540 -4.22199 1.18510 2.85754 3.20132 3.26820 3.27434 3.35724 3.51143 4.01785 4.30482 4.34345 4.39421 4.60349 4.81776 4.88455 4.97880 5.13324 5.16523 5.23475 5.28004 5.38103 5.45604 5.52053 5.61793 5.69316 5.70350 5.77191 5.79557 5.86296 5.92848 6.04204 6.13617 6.18982 6.30399 6.49459 6.59693 6.67074 6.78892 6.80946 6.90914 6.96936 7.07235 7.24605 7.46937 7.59136 7.73859 8.00279 8.22179 8.46403 8.80691 9.44073 10.91354 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015350 B = 0.004469 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.609674 B = 6263.632699 C = 6847.753158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.145 3.855 3 C -0.160 4.160 4 N -0.998 5.998 5 C 0.115 3.885 6 C 0.104 3.896 7 H 0.097 0.903 8 C -0.125 4.125 9 C -0.157 4.157 10 C 0.531 3.469 11 O -0.537 6.537 12 N -0.715 5.715 13 S 2.771 3.229 14 O -0.983 6.983 15 O -0.982 6.982 16 N -0.990 5.990 17 C 0.101 3.899 18 C 0.269 3.731 19 H 0.056 0.944 20 C -0.147 4.147 21 C -0.522 4.522 22 H 0.061 0.939 23 C 0.066 3.934 24 N -0.886 5.886 25 Si 0.894 3.106 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.278 1.278 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.404 0.596 43 H 0.041 0.959 44 H 0.074 0.926 45 H 0.060 0.940 46 H 0.093 0.907 47 H 0.011 0.989 48 H 0.033 0.967 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.077 12.521 10.205 16.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.039 3.961 3 C -0.219 4.219 4 N -0.835 5.835 5 C -0.013 4.013 6 C -0.003 4.003 7 H 0.115 0.885 8 C -0.164 4.164 9 C -0.197 4.197 10 C 0.317 3.683 11 O -0.414 6.414 12 N -0.370 5.370 13 S 2.782 3.218 14 O -0.966 6.966 15 O -0.966 6.966 16 N -0.832 5.832 17 C -0.046 4.046 18 C 0.166 3.834 19 H 0.073 0.927 20 C -0.206 4.206 21 C -0.562 4.562 22 H 0.080 0.920 23 C -0.137 4.137 24 N -0.525 5.525 25 Si 0.722 3.278 26 H -0.202 1.202 27 H -0.213 1.213 28 H -0.204 1.204 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.119 0.881 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.110 0.890 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.110 0.890 40 H 0.116 0.884 41 H 0.122 0.878 42 H 0.242 0.758 43 H 0.060 0.940 44 H 0.093 0.907 45 H 0.078 0.922 46 H 0.112 0.888 47 H 0.030 0.970 48 H 0.052 0.948 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.634 12.286 10.260 16.019 hybrid contribution -1.461 -0.272 -0.594 1.600 sum -2.094 12.015 9.666 15.562 Atomic orbital electron populations 1.22154 0.94566 1.04223 1.01139 1.20806 0.95097 0.92926 0.87248 1.22309 1.01121 0.96465 1.02017 1.58228 1.65802 1.48933 1.10551 1.21632 0.98517 0.97589 0.83553 1.22396 0.82192 0.97906 0.97842 0.88480 1.22588 1.00385 1.00485 0.92926 1.22342 0.96034 1.02487 0.98873 1.20621 0.88323 0.75407 0.83931 1.90712 1.23977 1.46152 1.80530 1.46114 1.13197 1.68325 1.09365 1.02225 0.73924 0.72763 0.72918 1.93595 1.70721 1.86476 1.45833 1.93578 1.72773 1.86089 1.44143 1.57727 1.70999 1.40351 1.14163 1.21232 0.98801 0.98587 0.85938 1.18695 0.94572 0.93040 0.77105 0.92653 1.22076 0.96079 0.98920 1.03574 1.21296 0.90732 1.44806 0.99333 0.92045 1.24914 0.98227 0.95037 0.95537 1.69866 1.35288 1.43693 1.03605 0.86636 0.85546 0.78419 0.77208 1.20215 1.21292 1.20350 0.92956 0.92062 0.90092 0.88139 0.92695 0.91666 0.92272 0.89048 0.90055 0.89816 0.88963 0.88434 0.87765 0.75820 0.94049 0.90750 0.92162 0.88845 0.96951 0.94827 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 9.05 37.15 0.34 -1.77 16 2 C 0.15 2.02 3.20 -67.93 -0.22 1.80 16 3 C -0.16 -1.71 8.10 37.16 0.30 -1.41 16 4 N -1.00 -14.38 2.66 -107.30 -0.29 -14.67 16 5 C 0.11 1.26 4.72 -4.04 -0.02 1.24 16 6 C 0.10 1.00 3.39 -67.00 -0.23 0.77 16 7 H 0.10 0.79 5.34 -51.93 -0.28 0.51 16 8 C -0.13 -0.87 6.70 -25.10 -0.17 -1.04 16 9 C -0.16 -1.53 6.86 -26.74 -0.18 -1.71 16 10 C 0.53 7.96 8.03 -10.86 -0.09 7.87 16 11 O -0.54 -10.63 18.03 5.56 0.10 -10.53 16 12 N -0.72 -9.56 3.84 -52.76 -0.20 -9.77 16 13 S 2.77 52.30 5.82 -107.50 -0.63 51.68 16 14 O -0.98 -19.19 13.20 -57.17 -0.75 -19.94 16 15 O -0.98 -21.87 15.32 -57.17 -0.88 -22.75 16 16 N -0.99 -19.94 3.12 -115.86 -0.36 -20.30 16 17 C 0.10 1.76 9.91 59.84 0.59 2.36 16 18 C 0.27 6.36 2.62 -69.09 -0.18 6.18 16 19 H 0.06 1.46 6.91 -51.93 -0.36 1.10 16 20 C -0.15 -3.47 8.95 37.16 0.33 -3.14 16 21 C -0.52 -12.71 8.37 -34.44 -0.29 -13.00 16 22 H 0.06 1.45 7.65 -52.49 -0.40 1.05 16 23 C 0.07 1.65 5.30 -17.82 -0.09 1.56 16 24 N -0.89 -23.59 11.32 55.43 0.63 -22.97 16 25 Si 0.89 19.57 29.54 -169.99 -5.02 14.55 16 26 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 27 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 29 H 0.05 0.54 6.57 -51.93 -0.34 0.20 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.10 1.71 7.00 -51.93 -0.36 1.35 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.50 6.27 -51.93 -0.33 0.17 16 36 H 0.09 0.79 6.23 -51.93 -0.32 0.47 16 37 H 0.08 0.94 7.63 -51.93 -0.40 0.55 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.09 0.46 7.89 -51.93 -0.41 0.05 16 40 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.40 5.90 8.57 -40.82 -0.35 5.55 16 43 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 1.32 6.41 -51.93 -0.33 0.99 16 45 H 0.06 0.98 7.02 -51.93 -0.36 0.62 16 46 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 47 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 48 H 0.03 0.74 6.65 -51.93 -0.35 0.39 16 49 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 387.18 15.07 5.83 5.83 Total: -1.00 -32.84 387.18 -9.31 -42.16 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -7.85 Total: 6.99 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: 0.10 Total: -0.28 kcal Atomic # 7 Polarization: -67.48 SS G_CDS: -0.22 Total: -67.70 kcal Atomic # 8 Polarization: -51.69 SS G_CDS: -1.53 Total: -53.22 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.55 kcal Atomic # 16 Polarization: 52.30 SS G_CDS: -0.63 Total: 51.68 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.84 -9.31 -42.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463894935.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.348 kcal (2) G-P(sol) polarization free energy of solvation -32.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds