Wall clock time and date at job start Wed Apr 1 2020 05:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47022 * 2 1 4 4 N 1.46495 * 109.47405 * 120.00055 * 2 1 3 5 5 C 1.46499 * 120.00044 * 304.60880 * 4 2 1 6 6 C 1.53004 * 109.47000 * 274.42742 * 5 4 2 7 7 H 1.08996 * 110.21549 * 63.25315 * 6 5 4 8 8 C 1.54486 * 110.24643 * 185.18451 * 6 5 4 9 9 C 1.54628 * 101.76229 * 93.58247 * 8 6 5 10 10 C 1.51288 * 104.19796 * 24.80070 * 9 8 6 11 11 O 1.21274 * 124.94101 * 163.70796 * 10 9 8 12 12 N 1.34420 * 110.11243 * 343.74436 * 10 9 8 13 13 S 1.65608 * 120.00139 * 124.60537 * 4 2 1 14 14 O 1.42099 * 106.40126 * 156.46099 * 13 4 2 15 15 O 1.42093 * 106.39881 * 23.54210 * 13 4 2 16 16 N 1.65599 * 107.21821 * 270.00277 * 13 4 2 17 17 C 1.46496 * 119.99650 * 269.72594 * 16 13 4 18 18 C 1.46496 * 120.00121 * 90.00035 * 16 13 4 19 19 H 1.09003 * 109.47200 * 359.97438 * 18 16 13 20 20 C 1.52997 * 109.47274 * 119.99830 * 18 16 13 21 21 C 1.50699 * 109.46954 * 240.00051 * 18 16 13 22 22 H 1.08001 * 120.00108 * 359.97438 * 21 18 16 23 23 C 1.37881 * 119.99701 * 179.97438 * 21 18 16 24 24 N 1.31509 * 120.00197 * 0.02562 * 23 21 18 25 25 Si 1.86809 * 119.99585 * 179.97438 * 23 21 18 26 26 H 1.48493 * 109.47049 * 60.00677 * 25 23 21 27 27 H 1.48504 * 109.46684 * 180.02562 * 25 23 21 28 28 H 1.48493 * 109.47329 * 300.00031 * 25 23 21 29 29 H 1.08999 * 109.47242 * 299.99709 * 1 2 3 30 30 H 1.09003 * 109.47310 * 59.99915 * 1 2 3 31 31 H 1.08999 * 109.46647 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47242 * 240.00291 * 2 1 3 33 33 H 1.09007 * 109.46852 * 172.60351 * 3 2 1 34 34 H 1.08997 * 109.46988 * 292.59801 * 3 2 1 35 35 H 1.08994 * 109.46597 * 52.60462 * 3 2 1 36 36 H 1.08994 * 109.46938 * 34.42681 * 5 4 2 37 37 H 1.09001 * 109.47268 * 154.42746 * 5 4 2 38 38 H 1.08995 * 110.96532 * 211.69968 * 8 6 5 39 39 H 1.08993 * 110.96659 * 335.43076 * 8 6 5 40 40 H 1.09001 * 110.48338 * 143.47215 * 9 8 6 41 41 H 1.08997 * 110.48863 * 266.11727 * 9 8 6 42 42 H 0.97001 * 124.34851 * 179.58977 * 12 10 9 43 43 H 1.09000 * 109.47310 * 90.00084 * 17 16 13 44 44 H 1.09004 * 109.46848 * 209.99803 * 17 16 13 45 45 H 1.09000 * 109.47337 * 329.99601 * 17 16 13 46 46 H 1.08999 * 109.47392 * 179.97438 * 20 18 16 47 47 H 1.08997 * 109.47085 * 300.00137 * 20 18 16 48 48 H 1.09002 * 109.46700 * 60.00169 * 20 18 16 49 49 H 0.97003 * 120.00268 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.5832 -0.2517 2.5243 6 6 2.4857 0.8857 3.0067 7 1 2.3875 1.7493 2.3489 8 6 2.1258 1.2752 4.4577 9 6 3.1164 0.4103 5.2711 10 6 4.2620 0.1599 4.3153 11 8 5.3624 -0.2345 4.6381 12 7 3.8829 0.4392 3.0562 13 16 3.0623 -1.9675 1.0468 14 8 3.7639 -2.0583 2.2792 15 8 3.7115 -1.8104 -0.2074 16 7 2.1439 -3.3404 0.9293 17 6 1.7693 -4.0768 2.1390 18 6 1.7110 -3.8219 -0.3849 19 1 2.0861 -3.1522 -1.1588 20 6 2.2607 -5.2305 -0.6184 21 6 0.2053 -3.8551 -0.4367 22 1 -0.3715 -3.5487 0.4234 23 6 -0.4359 -4.2768 -1.5822 24 7 0.2665 -4.6504 -2.6294 25 14 -2.3024 -4.3187 -1.6462 26 1 -2.8363 -2.9518 -1.4187 27 1 -2.7411 -4.8067 -2.9784 28 1 -2.8135 -5.2315 -0.5923 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1220 1.4454 0.1323 34 1 1.7887 1.9167 -0.9487 35 1 1.5726 1.9931 0.8164 36 1 0.5528 0.0997 2.4713 37 1 1.6468 -1.0868 3.2219 38 1 2.3011 2.3368 4.6315 39 1 1.0943 1.0092 4.6884 40 1 3.4645 0.9534 6.1498 41 1 2.6505 -0.5309 5.5630 42 1 4.4589 0.3563 2.2801 43 1 0.8216 -3.6945 2.5183 44 1 1.6651 -5.1357 1.9021 45 1 2.5423 -3.9483 2.8966 46 1 1.9382 -5.5889 -1.5960 47 1 3.3497 -5.2064 -0.5809 48 1 1.8851 -5.8999 0.1556 49 1 -0.1846 -4.9474 -3.4351 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001463894935.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:20 Heat of formation + Delta-G solvation = -129.780638 kcal Electronic energy + Delta-G solvation = -32299.684909 eV Core-core repulsion = 28194.821275 eV Total energy + Delta-G solvation = -4104.863634 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.31664 -38.79521 -38.39078 -37.88608 -36.95194 -36.84735 -34.48969 -32.53297 -32.09412 -30.91845 -29.56041 -27.99963 -27.31482 -26.96171 -25.52686 -22.66276 -22.08295 -21.87680 -21.21612 -19.84869 -18.96474 -18.61289 -18.31315 -18.12575 -17.28786 -16.82426 -16.44471 -16.07613 -15.71678 -15.28278 -15.20736 -14.89291 -14.76113 -14.67453 -14.50641 -14.33556 -13.75067 -13.66408 -13.62589 -13.44496 -13.43382 -13.31836 -13.19132 -13.05367 -12.91100 -12.75177 -12.69735 -12.61528 -12.38550 -12.31851 -12.18221 -12.15374 -11.96999 -11.84260 -11.61211 -11.47536 -11.15307 -10.81785 -10.48565 -10.44418 -9.72180 -9.55645 -8.06138 -6.20979 -0.29280 1.48101 1.49578 1.56439 1.75522 2.00342 2.47169 2.52967 2.58296 3.22420 3.38461 3.52394 3.71080 3.80877 3.98155 4.12208 4.19062 4.24094 4.33151 4.37153 4.47377 4.64003 4.68933 4.75221 4.78967 4.83371 4.89940 4.90415 4.93907 4.96857 5.03100 5.11256 5.12521 5.14912 5.17837 5.25086 5.31483 5.45065 5.58420 5.60667 5.67362 5.79929 5.90447 5.93845 6.10790 6.22804 6.30208 6.87579 7.35687 7.48695 8.98521 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015350 B = 0.004469 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.609674 B = 6263.632699 C = 6847.753158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.141 3.859 3 C -0.154 4.154 4 N -0.988 5.988 5 C 0.104 3.896 6 C 0.098 3.902 7 H 0.120 0.880 8 C -0.108 4.108 9 C -0.152 4.152 10 C 0.512 3.488 11 O -0.602 6.602 12 N -0.720 5.720 13 S 2.781 3.219 14 O -0.992 6.992 15 O -1.025 7.025 16 N -1.000 6.000 17 C 0.098 3.902 18 C 0.277 3.723 19 H 0.018 0.982 20 C -0.143 4.143 21 C -0.518 4.518 22 H 0.071 0.929 23 C 0.018 3.982 24 N -0.921 5.921 25 Si 0.956 3.044 26 H -0.263 1.263 27 H -0.294 1.294 28 H -0.272 1.272 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.045 0.955 32 H 0.056 0.944 33 H 0.044 0.956 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.129 0.871 37 H 0.077 0.923 38 H 0.108 0.892 39 H 0.126 0.874 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.391 0.609 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.011 0.989 48 H 0.045 0.955 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.316 15.007 12.469 20.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.035 3.965 3 C -0.213 4.213 4 N -0.828 5.828 5 C -0.022 4.022 6 C -0.007 4.007 7 H 0.137 0.863 8 C -0.146 4.146 9 C -0.192 4.192 10 C 0.300 3.700 11 O -0.484 6.484 12 N -0.371 5.371 13 S 2.792 3.208 14 O -0.976 6.976 15 O -1.009 7.009 16 N -0.841 5.841 17 C -0.047 4.047 18 C 0.172 3.828 19 H 0.036 0.964 20 C -0.202 4.202 21 C -0.557 4.557 22 H 0.089 0.911 23 C -0.182 4.182 24 N -0.560 5.560 25 Si 0.782 3.218 26 H -0.188 1.188 27 H -0.220 1.220 28 H -0.198 1.198 29 H 0.108 0.892 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.093 0.907 35 H 0.112 0.888 36 H 0.147 0.853 37 H 0.096 0.904 38 H 0.126 0.874 39 H 0.144 0.856 40 H 0.132 0.868 41 H 0.129 0.871 42 H 0.226 0.774 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.089 0.911 47 H 0.030 0.970 48 H 0.064 0.936 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.911 14.783 12.548 19.781 hybrid contribution -0.408 -1.009 -1.306 1.700 sum -4.320 13.774 11.242 18.297 Atomic orbital electron populations 1.22095 0.93254 1.02602 1.03430 1.20877 0.96008 0.94211 0.85366 1.22274 1.00697 0.94250 1.04071 1.57858 1.65219 1.47281 1.12483 1.22071 1.00763 0.98167 0.81213 1.22730 0.79649 0.97830 1.00538 0.86262 1.22691 1.01201 1.01283 0.89443 1.22404 0.94505 1.03773 0.98481 1.21687 0.88747 0.74254 0.85283 1.90663 1.26906 1.49114 1.81689 1.46418 1.14723 1.67382 1.08613 1.01691 0.74125 0.73193 0.71767 1.93584 1.71378 1.86876 1.45728 1.93515 1.74403 1.86715 1.46300 1.57660 1.71115 1.41703 1.13625 1.21376 1.00187 0.98127 0.85045 1.18327 0.94486 0.91968 0.78008 0.96374 1.21991 0.96044 0.99481 1.02705 1.21480 0.90920 1.43862 0.99437 0.91108 1.25677 1.02418 0.94864 0.95230 1.70020 1.36942 1.44927 1.04157 0.85643 0.80447 0.78956 0.76771 1.18782 1.21999 1.19766 0.89201 0.91227 0.93548 0.92578 0.93664 0.90656 0.88760 0.85300 0.90427 0.87382 0.85597 0.86824 0.87114 0.77354 0.91897 0.91325 0.91198 0.91055 0.96995 0.93649 0.92886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.61 9.05 71.98 0.65 -2.96 16 2 C 0.14 3.77 3.20 44.99 0.14 3.91 16 3 C -0.15 -2.89 8.10 71.98 0.58 -2.31 16 4 N -0.99 -27.19 2.66 -493.40 -1.31 -28.50 16 5 C 0.10 1.89 4.72 86.38 0.41 2.30 16 6 C 0.10 1.51 3.39 45.45 0.15 1.66 16 7 H 0.12 1.33 5.34 -2.39 -0.01 1.31 16 8 C -0.11 -0.91 6.70 31.65 0.21 -0.70 16 9 C -0.15 -2.47 6.86 30.59 0.21 -2.26 16 10 C 0.51 15.00 8.03 87.90 0.71 15.71 16 11 O -0.60 -24.61 18.03 -3.01 -0.05 -24.67 16 12 N -0.72 -18.43 3.84 -439.42 -1.69 -20.12 16 13 S 2.78 107.25 5.82 -56.49 -0.33 106.92 16 14 O -0.99 -39.28 13.20 -128.00 -1.69 -40.97 16 15 O -1.03 -48.42 15.32 -128.00 -1.96 -50.38 16 16 N -1.00 -40.79 3.12 -520.46 -1.62 -42.41 16 17 C 0.10 3.35 9.91 127.77 1.27 4.62 16 18 C 0.28 13.51 2.62 44.24 0.12 13.62 16 19 H 0.02 1.03 6.91 -2.39 -0.02 1.02 16 20 C -0.14 -6.99 8.95 71.98 0.64 -6.35 16 21 C -0.52 -25.27 8.37 25.60 0.21 -25.05 16 22 H 0.07 3.26 7.65 -2.91 -0.02 3.24 16 23 C 0.02 0.89 5.30 84.66 0.45 1.34 16 24 N -0.92 -50.43 11.32 21.45 0.24 -50.19 16 25 Si 0.96 39.69 29.54 68.60 2.03 41.71 16 26 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 27 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 28 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 29 H 0.09 1.38 6.57 -2.39 -0.02 1.36 16 30 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.06 2.01 7.00 -2.39 -0.02 1.99 16 33 H 0.04 0.94 8.14 -2.38 -0.02 0.93 16 34 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.09 1.09 6.27 -2.39 -0.01 1.08 16 36 H 0.13 1.44 6.23 -2.39 -0.01 1.43 16 37 H 0.08 1.53 7.63 -2.39 -0.02 1.51 16 38 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.13 0.33 7.89 -2.39 -0.02 0.31 16 40 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.39 11.59 8.57 -92.71 -0.79 10.80 16 43 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.07 2.39 6.41 -2.38 -0.02 2.38 16 45 H 0.07 2.23 7.02 -2.39 -0.02 2.22 16 46 H 0.07 3.82 6.07 -2.39 -0.01 3.80 16 47 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 48 H 0.04 2.05 6.65 -2.39 -0.02 2.03 16 49 H 0.26 13.79 8.31 -92.71 -0.77 13.02 16 Total: -1.00 -77.67 387.18 -0.46 -78.14 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: 0.17 Total: 26.92 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: 5.76 Total: 3.53 kcal Atomic # 7 Polarization: -136.83 SS G_CDS: -4.38 Total: -141.22 kcal Atomic # 8 Polarization: -112.31 SS G_CDS: -3.70 Total: -116.01 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 2.03 Total: 41.71 kcal Atomic # 16 Polarization: 107.25 SS G_CDS: -0.33 Total: 106.92 kcal Total: -77.67 -0.46 -78.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463894935.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.644 kcal (2) G-P(sol) polarization free energy of solvation -77.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds