Wall clock time and date at job start Wed Apr 1 2020 05:09:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08999 * 109.47014 * 2 1
4 4 N 1.46496 * 109.47337 * 239.99807 * 2 1 3
5 5 S 1.65599 * 120.00024 * 94.99618 * 4 2 1
6 6 C 1.81398 * 104.44859 * 64.72881 * 5 4 2
7 7 O 1.42102 * 104.27481 * 180.79905 * 5 4 2
8 8 O 1.42096 * 104.27928 * 308.65736 * 5 4 2
9 9 C 1.50700 * 109.47315 * 119.99761 * 2 1 3
10 10 O 1.21281 * 120.00106 * 91.41283 * 9 2 1
11 11 N 1.34777 * 120.00315 * 271.41928 * 9 2 1
12 12 C 1.46935 * 120.62694 * 5.66204 * 11 9 2
13 13 C 1.53617 * 108.54098 * 126.37065 * 12 11 9
14 14 C 1.53046 * 109.24548 * 54.85540 * 13 12 11
15 15 H 1.09003 * 109.45987 * 58.52932 * 14 13 12
16 16 C 1.52995 * 109.45067 * 178.49482 * 14 13 12
17 17 C 1.53035 * 109.53683 * 298.50931 * 14 13 12
18 18 C 1.46921 * 120.63478 * 185.94388 * 11 9 2
19 19 H 1.09001 * 109.58832 * 113.79364 * 18 11 9
20 20 C 1.53002 * 109.58604 * 353.51150 * 18 11 9
21 21 N 1.46502 * 109.47143 * 72.84329 * 20 18 11
22 22 C 1.36932 * 120.00179 * 181.27479 * 21 20 18
23 23 H 1.07997 * 120.00007 * 359.97438 * 22 21 20
24 24 C 1.38810 * 120.00053 * 180.02562 * 22 21 20
25 25 N 1.31620 * 120.00195 * 359.97438 * 24 22 21
26 26 Si 1.86804 * 120.00241 * 179.97438 * 24 22 21
27 27 H 1.48495 * 109.46921 * 89.99923 * 26 24 22
28 28 H 1.48505 * 109.47207 * 210.00090 * 26 24 22
29 29 H 1.48502 * 109.46708 * 330.00003 * 26 24 22
30 30 H 1.08996 * 109.47369 * 61.05389 * 1 2 3
31 31 H 1.08997 * 109.47362 * 181.05609 * 1 2 3
32 32 H 1.09006 * 109.47306 * 301.05379 * 1 2 3
33 33 H 0.97002 * 120.00239 * 274.72904 * 4 2 1
34 34 H 1.09000 * 109.47184 * 60.00052 * 6 5 4
35 35 H 1.08999 * 109.47432 * 179.97438 * 6 5 4
36 36 H 1.08997 * 109.46931 * 300.00061 * 6 5 4
37 37 H 1.08999 * 109.58509 * 246.20142 * 12 11 9
38 38 H 1.09000 * 109.58725 * 6.62945 * 12 11 9
39 39 H 1.09004 * 109.63745 * 294.86238 * 13 12 11
40 40 H 1.09001 * 109.43213 * 174.72344 * 13 12 11
41 41 H 1.09002 * 109.47107 * 180.02562 * 16 14 13
42 42 H 1.09006 * 109.47367 * 300.06287 * 16 14 13
43 43 H 1.09004 * 109.46889 * 60.06207 * 16 14 13
44 44 H 1.09005 * 109.50016 * 301.41531 * 17 14 13
45 45 H 1.08997 * 109.49998 * 181.31395 * 17 14 13
46 46 H 1.08997 * 109.47352 * 192.84638 * 20 18 11
47 47 H 1.09004 * 109.47115 * 312.84402 * 20 18 11
48 48 H 0.97003 * 119.99968 * 1.26961 * 21 20 18
49 49 H 0.97000 * 120.00344 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0183 -0.6906 -1.1961
5 16 2.4121 0.1771 -2.5505
6 6 3.8260 1.1933 -2.0417
7 8 2.8184 -0.8072 -3.4914
8 8 1.2725 0.9918 -2.7884
9 6 2.0323 -0.7103 1.2305
10 8 2.2589 -1.9012 1.1932
11 7 2.2298 -0.0223 2.3725
12 6 1.8439 1.3921 2.4705
13 6 0.9318 1.5659 3.6943
14 6 1.6432 1.0214 4.9351
15 1 2.5849 1.5520 5.0760
16 6 0.7541 1.2263 6.1632
17 6 1.9222 -0.4720 4.7511
18 6 2.8405 -0.6705 3.5410
19 1 3.8126 -0.2203 3.7422
20 6 3.0148 -2.1654 3.2655
21 7 4.1070 -2.3616 2.3090
22 6 4.4311 -3.6241 1.8893
23 1 3.8818 -4.4752 2.2636
24 6 5.4663 -3.8100 0.9834
25 7 6.1361 -2.7727 0.5275
26 14 5.9089 -5.5323 0.4113
27 1 5.1197 -5.8694 -0.8006
28 1 7.3577 -5.5904 0.0906
29 1 5.6011 -6.5063 1.4893
30 1 -0.3634 0.4973 -0.8992
31 1 -0.3634 -1.0274 0.0189
32 1 -0.3634 0.5301 0.8804
33 1 2.1147 -1.6558 -1.1935
34 1 4.6423 0.5459 -1.7216
35 1 4.1555 1.8043 -2.8821
36 1 3.5300 1.8401 -1.2158
37 1 2.7363 2.0071 2.5862
38 1 1.3080 1.6880 1.5686
39 1 0.0019 1.0188 3.5387
40 1 0.7125 2.6242 3.8357
41 1 1.2606 0.8390 7.0472
42 1 0.5552 2.2900 6.2945
43 1 -0.1875 0.6952 6.0227
44 1 0.9829 -0.9999 4.5854
45 1 2.4078 -0.8643 5.6445
46 1 3.2499 -2.6815 4.1963
47 1 2.0912 -2.5684 2.8500
48 1 4.6006 -1.5972 1.9730
49 1 6.8598 -2.9027 -0.1052
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001479577954.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:09:49
Heat of formation + Delta-G solvation = -60.069779 kcal
Electronic energy + Delta-G solvation = -31556.726538 eV
Core-core repulsion = 27454.885794 eV
Total energy + Delta-G solvation = -4101.840744 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.171 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-40.43377 -37.72160 -36.98128 -35.86822 -35.63527 -34.14136 -33.74400 -32.00894
-29.86481 -29.73589 -29.37437 -28.25141 -25.49759 -24.22588 -23.35035 -22.58776
-21.35246 -20.12652 -19.40222 -18.97350 -17.84852 -16.88371 -16.58063 -16.14658
-15.94453 -15.50602 -15.12350 -14.89031 -14.57846 -14.37463 -13.94378 -13.84134
-13.53321 -13.50198 -13.22959 -13.06200 -13.05215 -12.83752 -12.67928 -12.36908
-12.10185 -12.01452 -11.95768 -11.84382 -11.79705 -11.65993 -11.65171 -11.41114
-11.07835 -10.98219 -10.93238 -10.74199 -10.70008 -10.49484 -10.27246 -9.86975
-9.57797 -9.51402 -8.78600 -8.29647 -8.14685 -6.58680 -5.58106 -2.79030
0.38579 2.68268 3.19160 3.30053 3.55794 3.60874 3.61637 3.90339
4.29057 4.52301 4.59589 4.68057 4.75496 4.80593 4.81162 4.86608
5.03611 5.08660 5.18522 5.22282 5.33199 5.39903 5.48073 5.52945
5.61201 5.65692 5.70895 5.77396 5.78312 5.79853 5.84563 5.95917
6.00638 6.06467 6.07802 6.13445 6.21914 6.35477 6.50728 6.61762
6.89478 7.23370 7.25845 7.82016 7.87748 8.60655 8.77791 9.72547
10.30607 10.65598 11.66132
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.007172 B = 0.006087 C = 0.003597
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3903.027646 B = 4599.214636 C = 7783.173668
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C 0.138 3.862
3 H 0.089 0.911
4 N -1.095 6.095
5 S 2.616 3.384
6 C -0.674 4.674
7 O -0.955 6.955
8 O -0.964 6.964
9 C 0.481 3.519
10 O -0.437 6.437
11 N -0.613 5.613
12 C 0.103 3.897
13 C -0.127 4.127
14 C -0.092 4.092
15 H 0.070 0.930
16 C -0.145 4.145
17 C -0.121 4.121
18 C 0.143 3.857
19 H 0.068 0.932
20 C 0.155 3.845
21 N -0.704 5.704
22 C -0.201 4.201
23 H 0.064 0.936
24 C -0.022 4.022
25 N -0.943 5.943
26 Si 0.900 3.100
27 H -0.292 1.292
28 H -0.295 1.295
29 H -0.286 1.286
30 H 0.080 0.920
31 H 0.069 0.931
32 H 0.067 0.933
33 H 0.432 0.568
34 H 0.140 0.860
35 H 0.125 0.875
36 H 0.123 0.877
37 H 0.065 0.935
38 H 0.082 0.918
39 H 0.067 0.933
40 H 0.070 0.930
41 H 0.054 0.946
42 H 0.052 0.948
43 H 0.053 0.947
44 H 0.066 0.934
45 H 0.072 0.928
46 H 0.008 0.992
47 H 0.053 0.947
48 H 0.377 0.623
49 H 0.249 0.751
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.480 15.477 4.965 19.899
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.222 4.222
2 C 0.026 3.974
3 H 0.107 0.893
4 N -0.857 5.857
5 S 2.707 3.293
6 C -0.824 4.824
7 O -0.945 6.945
8 O -0.954 6.954
9 C 0.264 3.736
10 O -0.305 6.305
11 N -0.352 5.352
12 C -0.021 4.021
13 C -0.166 4.166
14 C -0.111 4.111
15 H 0.089 0.911
16 C -0.202 4.202
17 C -0.160 4.160
18 C 0.040 3.960
19 H 0.086 0.914
20 C 0.028 3.972
21 N -0.347 5.347
22 C -0.333 4.333
23 H 0.082 0.918
24 C -0.216 4.216
25 N -0.594 5.594
26 Si 0.732 3.268
27 H -0.220 1.220
28 H -0.222 1.222
29 H -0.212 1.212
30 H 0.099 0.901
31 H 0.088 0.912
32 H 0.085 0.915
33 H 0.270 0.730
34 H 0.158 0.842
35 H 0.144 0.856
36 H 0.141 0.859
37 H 0.084 0.916
38 H 0.100 0.900
39 H 0.086 0.914
40 H 0.089 0.911
41 H 0.073 0.927
42 H 0.071 0.929
43 H 0.072 0.928
44 H 0.085 0.915
45 H 0.091 0.909
46 H 0.026 0.974
47 H 0.071 0.929
48 H 0.210 0.790
49 H 0.059 0.941
Dipole moment (debyes) X Y Z Total
from point charges -11.797 14.707 4.071 19.288
hybrid contribution 1.161 -0.636 0.070 1.326
sum -10.636 14.071 4.141 18.118
Atomic orbital electron populations
1.22229 0.92951 1.03792 1.03253 1.20630 0.95887 0.95346 0.85541
0.89320 1.55417 1.81320 1.20886 1.28067 1.04652 0.76322 0.74978
0.73328 1.30536 1.22625 1.16806 1.12475 1.93634 1.84254 1.57414
1.59246 1.93584 1.46531 1.71274 1.84041 1.20431 0.80581 0.88705
0.83876 1.91064 1.44152 1.13199 1.82042 1.47889 1.63683 1.10702
1.12881 1.21821 0.98551 0.82866 0.98825 1.22045 0.98898 1.01086
0.94552 1.21115 0.98973 0.96471 0.94509 0.91122 1.21815 0.99732
1.01185 0.97513 1.21969 1.00435 0.95517 0.98042 1.21519 0.94780
0.95796 0.83903 0.91415 1.21021 0.94521 0.89608 0.92099 1.42164
1.35875 1.06113 1.50519 1.19102 1.10543 0.85196 1.18436 0.91798
1.24561 0.99669 0.96612 1.00744 1.69628 1.25260 1.27924 1.36570
0.86273 0.77118 0.84737 0.78632 1.22011 1.22217 1.21188 0.90142
0.91241 0.91454 0.72992 0.84153 0.85619 0.85865 0.91630 0.90017
0.91389 0.91098 0.92681 0.92909 0.92780 0.91503 0.90924 0.97446
0.92933 0.78988 0.94099
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.86 9.32 37.16 0.35 -1.51 16
2 C 0.14 1.81 2.22 -69.09 -0.15 1.66 16
3 H 0.09 0.90 5.56 -51.93 -0.29 0.61 16
4 N -1.10 -16.31 5.32 -5.89 -0.03 -16.35 16
5 S 2.62 35.96 6.02 -107.50 -0.65 35.31 16
6 C -0.67 -7.33 10.77 101.05 1.09 -6.24 16
7 O -0.96 -17.24 18.08 -57.54 -1.04 -18.28 16
8 O -0.96 -14.19 17.10 -57.54 -0.98 -15.18 16
9 C 0.48 7.84 6.55 -10.99 -0.07 7.77 16
10 O -0.44 -9.27 10.01 5.56 0.06 -9.22 16
11 N -0.61 -8.43 2.97 -164.95 -0.49 -8.92 16
12 C 0.10 0.98 6.12 -3.48 -0.02 0.96 16
13 C -0.13 -1.04 5.38 -26.39 -0.14 -1.18 16
14 C -0.09 -0.83 2.68 -90.58 -0.24 -1.08 16
15 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
16 C -0.15 -1.12 9.19 37.16 0.34 -0.78 16
17 C -0.12 -1.41 4.63 -26.61 -0.12 -1.53 16
18 C 0.14 2.18 2.90 -67.60 -0.20 1.98 16
19 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16
20 C 0.15 3.14 4.89 -4.04 -0.02 3.12 16
21 N -0.70 -17.67 3.44 -59.91 -0.21 -17.88 16
22 C -0.20 -5.73 9.51 -15.06 -0.14 -5.87 16
23 H 0.06 1.83 7.83 -52.49 -0.41 1.42 16
24 C -0.02 -0.64 5.50 -17.43 -0.10 -0.74 16
25 N -0.94 -28.61 13.06 55.49 0.72 -27.89 16
26 Si 0.90 23.49 29.55 -169.99 -5.02 18.47 16
27 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16
28 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16
29 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16
30 H 0.08 0.91 7.41 -51.93 -0.38 0.53 16
31 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16
32 H 0.07 0.61 7.42 -51.93 -0.39 0.23 16
33 H 0.43 7.39 8.10 -34.47 -0.28 7.11 16
34 H 0.14 1.77 8.14 -51.92 -0.42 1.35 16
35 H 0.13 1.08 8.14 -51.92 -0.42 0.65 16
36 H 0.12 1.06 7.43 -51.93 -0.39 0.68 16
37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16
38 H 0.08 0.64 4.96 -51.93 -0.26 0.38 16
39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16
40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16
41 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16
42 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16
43 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16
44 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16
45 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16
46 H 0.01 0.17 8.09 -51.93 -0.42 -0.26 16
47 H 0.05 1.16 6.01 -52.00 -0.31 0.84 16
48 H 0.38 10.00 7.59 -40.82 -0.31 9.69 16
49 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16
LS Contribution 391.06 15.07 5.89 5.89
Total: -1.00 -37.06 391.06 -9.25 -46.31
By element:
Atomic # 1 Polarization: 19.24 SS G_CDS: -8.07 Total: 11.18 kcal
Atomic # 6 Polarization: -4.01 SS G_CDS: 0.57 Total: -3.44 kcal
Atomic # 7 Polarization: -71.03 SS G_CDS: 0.00 Total: -71.04 kcal
Atomic # 8 Polarization: -40.71 SS G_CDS: -1.97 Total: -42.68 kcal
Atomic # 14 Polarization: 23.49 SS G_CDS: -5.02 Total: 18.47 kcal
Atomic # 16 Polarization: 35.96 SS G_CDS: -0.65 Total: 35.31 kcal
Total LS contribution 5.89 Total: 5.89 kcal
Total: -37.06 -9.25 -46.31 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001479577954.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -13.761 kcal
(2) G-P(sol) polarization free energy of solvation -37.062 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.823 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.247 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.309 kcal
(6) G-S(sol) free energy of system = (1) + (5) -60.070 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds