Wall clock time and date at job start Wed Apr 1 2020 05:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47014 * 2 1 4 4 N 1.46496 * 109.47337 * 239.99807 * 2 1 3 5 5 S 1.65599 * 120.00024 * 94.99618 * 4 2 1 6 6 C 1.81398 * 104.44859 * 64.72881 * 5 4 2 7 7 O 1.42102 * 104.27481 * 180.79905 * 5 4 2 8 8 O 1.42096 * 104.27928 * 308.65736 * 5 4 2 9 9 C 1.50700 * 109.47315 * 119.99761 * 2 1 3 10 10 O 1.21281 * 120.00106 * 91.41283 * 9 2 1 11 11 N 1.34777 * 120.00315 * 271.41928 * 9 2 1 12 12 C 1.46935 * 120.62694 * 5.66204 * 11 9 2 13 13 C 1.53617 * 108.54098 * 126.37065 * 12 11 9 14 14 C 1.53046 * 109.24548 * 54.85540 * 13 12 11 15 15 H 1.09003 * 109.45987 * 58.52932 * 14 13 12 16 16 C 1.52995 * 109.45067 * 178.49482 * 14 13 12 17 17 C 1.53035 * 109.53683 * 298.50931 * 14 13 12 18 18 C 1.46921 * 120.63478 * 185.94388 * 11 9 2 19 19 H 1.09001 * 109.58832 * 113.79364 * 18 11 9 20 20 C 1.53002 * 109.58604 * 353.51150 * 18 11 9 21 21 N 1.46502 * 109.47143 * 72.84329 * 20 18 11 22 22 C 1.36932 * 120.00179 * 181.27479 * 21 20 18 23 23 H 1.07997 * 120.00007 * 359.97438 * 22 21 20 24 24 C 1.38810 * 120.00053 * 180.02562 * 22 21 20 25 25 N 1.31620 * 120.00195 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 120.00241 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.46921 * 89.99923 * 26 24 22 28 28 H 1.48505 * 109.47207 * 210.00090 * 26 24 22 29 29 H 1.48502 * 109.46708 * 330.00003 * 26 24 22 30 30 H 1.08996 * 109.47369 * 61.05389 * 1 2 3 31 31 H 1.08997 * 109.47362 * 181.05609 * 1 2 3 32 32 H 1.09006 * 109.47306 * 301.05379 * 1 2 3 33 33 H 0.97002 * 120.00239 * 274.72904 * 4 2 1 34 34 H 1.09000 * 109.47184 * 60.00052 * 6 5 4 35 35 H 1.08999 * 109.47432 * 179.97438 * 6 5 4 36 36 H 1.08997 * 109.46931 * 300.00061 * 6 5 4 37 37 H 1.08999 * 109.58509 * 246.20142 * 12 11 9 38 38 H 1.09000 * 109.58725 * 6.62945 * 12 11 9 39 39 H 1.09004 * 109.63745 * 294.86238 * 13 12 11 40 40 H 1.09001 * 109.43213 * 174.72344 * 13 12 11 41 41 H 1.09002 * 109.47107 * 180.02562 * 16 14 13 42 42 H 1.09006 * 109.47367 * 300.06287 * 16 14 13 43 43 H 1.09004 * 109.46889 * 60.06207 * 16 14 13 44 44 H 1.09005 * 109.50016 * 301.41531 * 17 14 13 45 45 H 1.08997 * 109.49998 * 181.31395 * 17 14 13 46 46 H 1.08997 * 109.47352 * 192.84638 * 20 18 11 47 47 H 1.09004 * 109.47115 * 312.84402 * 20 18 11 48 48 H 0.97003 * 119.99968 * 1.26961 * 21 20 18 49 49 H 0.97000 * 120.00344 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 16 2.4121 0.1771 -2.5505 6 6 3.8260 1.1933 -2.0417 7 8 2.8184 -0.8072 -3.4914 8 8 1.2725 0.9918 -2.7884 9 6 2.0323 -0.7103 1.2305 10 8 2.2589 -1.9012 1.1932 11 7 2.2298 -0.0223 2.3725 12 6 1.8439 1.3921 2.4705 13 6 0.9318 1.5659 3.6943 14 6 1.6432 1.0214 4.9351 15 1 2.5849 1.5520 5.0760 16 6 0.7541 1.2263 6.1632 17 6 1.9222 -0.4720 4.7511 18 6 2.8405 -0.6705 3.5410 19 1 3.8126 -0.2203 3.7422 20 6 3.0148 -2.1654 3.2655 21 7 4.1070 -2.3616 2.3090 22 6 4.4311 -3.6241 1.8893 23 1 3.8818 -4.4752 2.2636 24 6 5.4663 -3.8100 0.9834 25 7 6.1361 -2.7727 0.5275 26 14 5.9089 -5.5323 0.4113 27 1 5.1197 -5.8694 -0.8006 28 1 7.3577 -5.5904 0.0906 29 1 5.6011 -6.5063 1.4893 30 1 -0.3634 0.4973 -0.8992 31 1 -0.3634 -1.0274 0.0189 32 1 -0.3634 0.5301 0.8804 33 1 2.1147 -1.6558 -1.1935 34 1 4.6423 0.5459 -1.7216 35 1 4.1555 1.8043 -2.8821 36 1 3.5300 1.8401 -1.2158 37 1 2.7363 2.0071 2.5862 38 1 1.3080 1.6880 1.5686 39 1 0.0019 1.0188 3.5387 40 1 0.7125 2.6242 3.8357 41 1 1.2606 0.8390 7.0472 42 1 0.5552 2.2900 6.2945 43 1 -0.1875 0.6952 6.0227 44 1 0.9829 -0.9999 4.5854 45 1 2.4078 -0.8643 5.6445 46 1 3.2499 -2.6815 4.1963 47 1 2.0912 -2.5684 2.8500 48 1 4.6006 -1.5972 1.9730 49 1 6.8598 -2.9027 -0.1052 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479577954.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:49 Heat of formation + Delta-G solvation = -60.069779 kcal Electronic energy + Delta-G solvation = -31556.726538 eV Core-core repulsion = 27454.885794 eV Total energy + Delta-G solvation = -4101.840744 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.43377 -37.72160 -36.98128 -35.86822 -35.63527 -34.14136 -33.74400 -32.00894 -29.86481 -29.73589 -29.37437 -28.25141 -25.49759 -24.22588 -23.35035 -22.58776 -21.35246 -20.12652 -19.40222 -18.97350 -17.84852 -16.88371 -16.58063 -16.14658 -15.94453 -15.50602 -15.12350 -14.89031 -14.57846 -14.37463 -13.94378 -13.84134 -13.53321 -13.50198 -13.22959 -13.06200 -13.05215 -12.83752 -12.67928 -12.36908 -12.10185 -12.01452 -11.95768 -11.84382 -11.79705 -11.65993 -11.65171 -11.41114 -11.07835 -10.98219 -10.93238 -10.74199 -10.70008 -10.49484 -10.27246 -9.86975 -9.57797 -9.51402 -8.78600 -8.29647 -8.14685 -6.58680 -5.58106 -2.79030 0.38579 2.68268 3.19160 3.30053 3.55794 3.60874 3.61637 3.90339 4.29057 4.52301 4.59589 4.68057 4.75496 4.80593 4.81162 4.86608 5.03611 5.08660 5.18522 5.22282 5.33199 5.39903 5.48073 5.52945 5.61201 5.65692 5.70895 5.77396 5.78312 5.79853 5.84563 5.95917 6.00638 6.06467 6.07802 6.13445 6.21914 6.35477 6.50728 6.61762 6.89478 7.23370 7.25845 7.82016 7.87748 8.60655 8.77791 9.72547 10.30607 10.65598 11.66132 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007172 B = 0.006087 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3903.027646 B = 4599.214636 C = 7783.173668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.138 3.862 3 H 0.089 0.911 4 N -1.095 6.095 5 S 2.616 3.384 6 C -0.674 4.674 7 O -0.955 6.955 8 O -0.964 6.964 9 C 0.481 3.519 10 O -0.437 6.437 11 N -0.613 5.613 12 C 0.103 3.897 13 C -0.127 4.127 14 C -0.092 4.092 15 H 0.070 0.930 16 C -0.145 4.145 17 C -0.121 4.121 18 C 0.143 3.857 19 H 0.068 0.932 20 C 0.155 3.845 21 N -0.704 5.704 22 C -0.201 4.201 23 H 0.064 0.936 24 C -0.022 4.022 25 N -0.943 5.943 26 Si 0.900 3.100 27 H -0.292 1.292 28 H -0.295 1.295 29 H -0.286 1.286 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.432 0.568 34 H 0.140 0.860 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.053 0.947 44 H 0.066 0.934 45 H 0.072 0.928 46 H 0.008 0.992 47 H 0.053 0.947 48 H 0.377 0.623 49 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.480 15.477 4.965 19.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.026 3.974 3 H 0.107 0.893 4 N -0.857 5.857 5 S 2.707 3.293 6 C -0.824 4.824 7 O -0.945 6.945 8 O -0.954 6.954 9 C 0.264 3.736 10 O -0.305 6.305 11 N -0.352 5.352 12 C -0.021 4.021 13 C -0.166 4.166 14 C -0.111 4.111 15 H 0.089 0.911 16 C -0.202 4.202 17 C -0.160 4.160 18 C 0.040 3.960 19 H 0.086 0.914 20 C 0.028 3.972 21 N -0.347 5.347 22 C -0.333 4.333 23 H 0.082 0.918 24 C -0.216 4.216 25 N -0.594 5.594 26 Si 0.732 3.268 27 H -0.220 1.220 28 H -0.222 1.222 29 H -0.212 1.212 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.270 0.730 34 H 0.158 0.842 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.085 0.915 45 H 0.091 0.909 46 H 0.026 0.974 47 H 0.071 0.929 48 H 0.210 0.790 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -11.797 14.707 4.071 19.288 hybrid contribution 1.161 -0.636 0.070 1.326 sum -10.636 14.071 4.141 18.118 Atomic orbital electron populations 1.22229 0.92951 1.03792 1.03253 1.20630 0.95887 0.95346 0.85541 0.89320 1.55417 1.81320 1.20886 1.28067 1.04652 0.76322 0.74978 0.73328 1.30536 1.22625 1.16806 1.12475 1.93634 1.84254 1.57414 1.59246 1.93584 1.46531 1.71274 1.84041 1.20431 0.80581 0.88705 0.83876 1.91064 1.44152 1.13199 1.82042 1.47889 1.63683 1.10702 1.12881 1.21821 0.98551 0.82866 0.98825 1.22045 0.98898 1.01086 0.94552 1.21115 0.98973 0.96471 0.94509 0.91122 1.21815 0.99732 1.01185 0.97513 1.21969 1.00435 0.95517 0.98042 1.21519 0.94780 0.95796 0.83903 0.91415 1.21021 0.94521 0.89608 0.92099 1.42164 1.35875 1.06113 1.50519 1.19102 1.10543 0.85196 1.18436 0.91798 1.24561 0.99669 0.96612 1.00744 1.69628 1.25260 1.27924 1.36570 0.86273 0.77118 0.84737 0.78632 1.22011 1.22217 1.21188 0.90142 0.91241 0.91454 0.72992 0.84153 0.85619 0.85865 0.91630 0.90017 0.91389 0.91098 0.92681 0.92909 0.92780 0.91503 0.90924 0.97446 0.92933 0.78988 0.94099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.32 37.16 0.35 -1.51 16 2 C 0.14 1.81 2.22 -69.09 -0.15 1.66 16 3 H 0.09 0.90 5.56 -51.93 -0.29 0.61 16 4 N -1.10 -16.31 5.32 -5.89 -0.03 -16.35 16 5 S 2.62 35.96 6.02 -107.50 -0.65 35.31 16 6 C -0.67 -7.33 10.77 101.05 1.09 -6.24 16 7 O -0.96 -17.24 18.08 -57.54 -1.04 -18.28 16 8 O -0.96 -14.19 17.10 -57.54 -0.98 -15.18 16 9 C 0.48 7.84 6.55 -10.99 -0.07 7.77 16 10 O -0.44 -9.27 10.01 5.56 0.06 -9.22 16 11 N -0.61 -8.43 2.97 -164.95 -0.49 -8.92 16 12 C 0.10 0.98 6.12 -3.48 -0.02 0.96 16 13 C -0.13 -1.04 5.38 -26.39 -0.14 -1.18 16 14 C -0.09 -0.83 2.68 -90.58 -0.24 -1.08 16 15 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 16 C -0.15 -1.12 9.19 37.16 0.34 -0.78 16 17 C -0.12 -1.41 4.63 -26.61 -0.12 -1.53 16 18 C 0.14 2.18 2.90 -67.60 -0.20 1.98 16 19 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 20 C 0.15 3.14 4.89 -4.04 -0.02 3.12 16 21 N -0.70 -17.67 3.44 -59.91 -0.21 -17.88 16 22 C -0.20 -5.73 9.51 -15.06 -0.14 -5.87 16 23 H 0.06 1.83 7.83 -52.49 -0.41 1.42 16 24 C -0.02 -0.64 5.50 -17.43 -0.10 -0.74 16 25 N -0.94 -28.61 13.06 55.49 0.72 -27.89 16 26 Si 0.90 23.49 29.55 -169.99 -5.02 18.47 16 27 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16 28 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 29 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 30 H 0.08 0.91 7.41 -51.93 -0.38 0.53 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.61 7.42 -51.93 -0.39 0.23 16 33 H 0.43 7.39 8.10 -34.47 -0.28 7.11 16 34 H 0.14 1.77 8.14 -51.92 -0.42 1.35 16 35 H 0.13 1.08 8.14 -51.92 -0.42 0.65 16 36 H 0.12 1.06 7.43 -51.93 -0.39 0.68 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.64 4.96 -51.93 -0.26 0.38 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 46 H 0.01 0.17 8.09 -51.93 -0.42 -0.26 16 47 H 0.05 1.16 6.01 -52.00 -0.31 0.84 16 48 H 0.38 10.00 7.59 -40.82 -0.31 9.69 16 49 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 391.06 15.07 5.89 5.89 Total: -1.00 -37.06 391.06 -9.25 -46.31 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -8.07 Total: 11.18 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: 0.57 Total: -3.44 kcal Atomic # 7 Polarization: -71.03 SS G_CDS: 0.00 Total: -71.04 kcal Atomic # 8 Polarization: -40.71 SS G_CDS: -1.97 Total: -42.68 kcal Atomic # 14 Polarization: 23.49 SS G_CDS: -5.02 Total: 18.47 kcal Atomic # 16 Polarization: 35.96 SS G_CDS: -0.65 Total: 35.31 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.06 -9.25 -46.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479577954.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.761 kcal (2) G-P(sol) polarization free energy of solvation -37.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds