Wall clock time and date at job start Wed Apr 1 2020 05:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47014 * 2 1 4 4 N 1.46496 * 109.47337 * 239.99807 * 2 1 3 5 5 S 1.65599 * 120.00024 * 94.99618 * 4 2 1 6 6 C 1.81398 * 104.44859 * 64.72881 * 5 4 2 7 7 O 1.42102 * 104.27481 * 180.79905 * 5 4 2 8 8 O 1.42096 * 104.27928 * 308.65736 * 5 4 2 9 9 C 1.50700 * 109.47315 * 119.99761 * 2 1 3 10 10 O 1.21281 * 120.00106 * 91.41283 * 9 2 1 11 11 N 1.34777 * 120.00315 * 271.41928 * 9 2 1 12 12 C 1.46935 * 120.62694 * 5.66204 * 11 9 2 13 13 C 1.53617 * 108.54098 * 126.37065 * 12 11 9 14 14 C 1.53046 * 109.24548 * 54.85540 * 13 12 11 15 15 H 1.09003 * 109.45987 * 58.52932 * 14 13 12 16 16 C 1.52995 * 109.45067 * 178.49482 * 14 13 12 17 17 C 1.53035 * 109.53683 * 298.50931 * 14 13 12 18 18 C 1.46921 * 120.63478 * 185.94388 * 11 9 2 19 19 H 1.09001 * 109.58832 * 113.79364 * 18 11 9 20 20 C 1.53002 * 109.58604 * 353.51150 * 18 11 9 21 21 N 1.46502 * 109.47143 * 72.84329 * 20 18 11 22 22 C 1.36932 * 120.00179 * 181.27479 * 21 20 18 23 23 H 1.07997 * 120.00007 * 359.97438 * 22 21 20 24 24 C 1.38810 * 120.00053 * 180.02562 * 22 21 20 25 25 N 1.31620 * 120.00195 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 120.00241 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.46921 * 89.99923 * 26 24 22 28 28 H 1.48505 * 109.47207 * 210.00090 * 26 24 22 29 29 H 1.48502 * 109.46708 * 330.00003 * 26 24 22 30 30 H 1.08996 * 109.47369 * 61.05389 * 1 2 3 31 31 H 1.08997 * 109.47362 * 181.05609 * 1 2 3 32 32 H 1.09006 * 109.47306 * 301.05379 * 1 2 3 33 33 H 0.97002 * 120.00239 * 274.72904 * 4 2 1 34 34 H 1.09000 * 109.47184 * 60.00052 * 6 5 4 35 35 H 1.08999 * 109.47432 * 179.97438 * 6 5 4 36 36 H 1.08997 * 109.46931 * 300.00061 * 6 5 4 37 37 H 1.08999 * 109.58509 * 246.20142 * 12 11 9 38 38 H 1.09000 * 109.58725 * 6.62945 * 12 11 9 39 39 H 1.09004 * 109.63745 * 294.86238 * 13 12 11 40 40 H 1.09001 * 109.43213 * 174.72344 * 13 12 11 41 41 H 1.09002 * 109.47107 * 180.02562 * 16 14 13 42 42 H 1.09006 * 109.47367 * 300.06287 * 16 14 13 43 43 H 1.09004 * 109.46889 * 60.06207 * 16 14 13 44 44 H 1.09005 * 109.50016 * 301.41531 * 17 14 13 45 45 H 1.08997 * 109.49998 * 181.31395 * 17 14 13 46 46 H 1.08997 * 109.47352 * 192.84638 * 20 18 11 47 47 H 1.09004 * 109.47115 * 312.84402 * 20 18 11 48 48 H 0.97003 * 119.99968 * 1.26961 * 21 20 18 49 49 H 0.97000 * 120.00344 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 16 2.4121 0.1771 -2.5505 6 6 3.8260 1.1933 -2.0417 7 8 2.8184 -0.8072 -3.4914 8 8 1.2725 0.9918 -2.7884 9 6 2.0323 -0.7103 1.2305 10 8 2.2589 -1.9012 1.1932 11 7 2.2298 -0.0223 2.3725 12 6 1.8439 1.3921 2.4705 13 6 0.9318 1.5659 3.6943 14 6 1.6432 1.0214 4.9351 15 1 2.5849 1.5520 5.0760 16 6 0.7541 1.2263 6.1632 17 6 1.9222 -0.4720 4.7511 18 6 2.8405 -0.6705 3.5410 19 1 3.8126 -0.2203 3.7422 20 6 3.0148 -2.1654 3.2655 21 7 4.1070 -2.3616 2.3090 22 6 4.4311 -3.6241 1.8893 23 1 3.8818 -4.4752 2.2636 24 6 5.4663 -3.8100 0.9834 25 7 6.1361 -2.7727 0.5275 26 14 5.9089 -5.5323 0.4113 27 1 5.1197 -5.8694 -0.8006 28 1 7.3577 -5.5904 0.0906 29 1 5.6011 -6.5063 1.4893 30 1 -0.3634 0.4973 -0.8992 31 1 -0.3634 -1.0274 0.0189 32 1 -0.3634 0.5301 0.8804 33 1 2.1147 -1.6558 -1.1935 34 1 4.6423 0.5459 -1.7216 35 1 4.1555 1.8043 -2.8821 36 1 3.5300 1.8401 -1.2158 37 1 2.7363 2.0071 2.5862 38 1 1.3080 1.6880 1.5686 39 1 0.0019 1.0188 3.5387 40 1 0.7125 2.6242 3.8357 41 1 1.2606 0.8390 7.0472 42 1 0.5552 2.2900 6.2945 43 1 -0.1875 0.6952 6.0227 44 1 0.9829 -0.9999 4.5854 45 1 2.4078 -0.8643 5.6445 46 1 3.2499 -2.6815 4.1963 47 1 2.0912 -2.5684 2.8500 48 1 4.6006 -1.5972 1.9730 49 1 6.8598 -2.9027 -0.1052 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479577954.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:46 Heat of formation + Delta-G solvation = -89.363670 kcal Electronic energy + Delta-G solvation = -31557.996816 eV Core-core repulsion = 27454.885794 eV Total energy + Delta-G solvation = -4103.111023 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.74 seconds Orbital eigenvalues (eV) -41.60709 -38.74869 -38.18213 -37.09623 -36.93295 -35.79492 -34.75387 -33.63307 -31.52322 -30.73298 -30.30349 -29.14923 -27.10407 -25.38375 -24.34583 -24.13739 -22.64133 -21.05779 -20.48851 -20.12584 -19.19004 -18.66436 -17.74499 -17.24999 -17.12459 -16.69891 -16.65546 -16.09890 -15.85978 -15.39024 -15.29825 -15.01732 -14.73629 -14.67339 -14.48423 -14.14705 -14.06629 -14.01220 -13.78603 -13.65549 -13.26992 -13.19085 -13.12969 -13.03993 -12.85402 -12.81713 -12.70981 -12.61605 -12.54688 -12.42980 -12.12471 -12.06260 -12.00589 -11.81638 -11.64290 -11.25635 -11.12564 -10.87138 -10.66373 -9.67280 -9.39755 -8.63299 -7.82405 -5.00369 -0.68892 1.43665 1.47489 1.52760 1.57675 2.00534 2.18009 2.62840 2.84299 3.23710 3.48647 3.52585 3.75503 3.80723 3.92233 3.95861 4.03143 4.12175 4.15013 4.20869 4.34802 4.38574 4.45286 4.52939 4.62104 4.71534 4.85404 4.87296 4.89471 4.91180 4.96502 4.99196 5.07899 5.09783 5.18786 5.20757 5.29474 5.32131 5.41907 5.48300 5.57449 5.63923 5.89240 5.92029 6.40085 6.68387 7.46836 7.56949 8.25938 8.50097 9.41776 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007172 B = 0.006087 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3903.027646 B = 4599.214636 C = 7783.173668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.135 3.865 3 H 0.127 0.873 4 N -1.108 6.108 5 S 2.625 3.375 6 C -0.658 4.658 7 O -1.006 7.006 8 O -0.974 6.974 9 C 0.479 3.521 10 O -0.500 6.500 11 N -0.609 5.609 12 C 0.092 3.908 13 C -0.122 4.122 14 C -0.088 4.088 15 H 0.074 0.926 16 C -0.141 4.141 17 C -0.112 4.112 18 C 0.150 3.850 19 H 0.061 0.939 20 C 0.157 3.843 21 N -0.706 5.706 22 C -0.198 4.198 23 H 0.055 0.945 24 C -0.077 4.077 25 N -0.968 5.968 26 Si 0.953 3.047 27 H -0.299 1.299 28 H -0.296 1.296 29 H -0.276 1.276 30 H 0.084 0.916 31 H 0.050 0.950 32 H 0.096 0.904 33 H 0.418 0.582 34 H 0.124 0.876 35 H 0.155 0.845 36 H 0.155 0.845 37 H 0.081 0.919 38 H 0.105 0.895 39 H 0.066 0.934 40 H 0.102 0.898 41 H 0.052 0.948 42 H 0.069 0.931 43 H 0.052 0.948 44 H 0.060 0.940 45 H 0.073 0.927 46 H 0.000 1.000 47 H 0.037 0.963 48 H 0.368 0.632 49 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.497 18.648 6.167 23.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.024 3.976 3 H 0.144 0.856 4 N -0.866 5.866 5 S 2.720 3.280 6 C -0.812 4.812 7 O -0.997 6.997 8 O -0.964 6.964 9 C 0.263 3.737 10 O -0.372 6.372 11 N -0.345 5.345 12 C -0.030 4.030 13 C -0.160 4.160 14 C -0.107 4.107 15 H 0.093 0.907 16 C -0.198 4.198 17 C -0.151 4.151 18 C 0.046 3.954 19 H 0.079 0.921 20 C 0.030 3.970 21 N -0.347 5.347 22 C -0.331 4.331 23 H 0.073 0.927 24 C -0.269 4.269 25 N -0.622 5.622 26 Si 0.785 3.215 27 H -0.227 1.227 28 H -0.223 1.223 29 H -0.201 1.201 30 H 0.103 0.897 31 H 0.069 0.931 32 H 0.114 0.886 33 H 0.254 0.746 34 H 0.143 0.857 35 H 0.173 0.827 36 H 0.173 0.827 37 H 0.099 0.901 38 H 0.123 0.877 39 H 0.085 0.915 40 H 0.120 0.880 41 H 0.071 0.929 42 H 0.088 0.912 43 H 0.071 0.929 44 H 0.079 0.921 45 H 0.091 0.909 46 H 0.018 0.982 47 H 0.055 0.945 48 H 0.200 0.800 49 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -12.887 17.915 5.321 22.701 hybrid contribution 1.414 -1.543 -0.223 2.105 sum -11.473 16.372 5.098 20.632 Atomic orbital electron populations 1.22215 0.91523 1.03162 1.04799 1.20884 0.97007 0.96360 0.83375 0.85574 1.55508 1.81999 1.20303 1.28822 1.04244 0.76761 0.74466 0.72499 1.30373 1.19597 1.16406 1.14791 1.93567 1.85067 1.59744 1.61295 1.93559 1.47753 1.70937 1.84192 1.21050 0.79258 0.88264 0.85108 1.91038 1.47308 1.15852 1.83037 1.48006 1.62456 1.12477 1.11594 1.22241 0.99930 0.79956 1.00842 1.22044 0.98092 1.02907 0.92982 1.21101 0.99757 0.93936 0.95882 0.90716 1.21771 0.99202 1.02291 0.96573 1.21902 0.99038 0.98084 0.96075 1.21307 0.95803 0.92242 0.86009 0.92059 1.21040 0.92220 0.93577 0.90115 1.42188 1.36898 1.04538 1.51035 1.19322 1.09668 0.86445 1.17641 0.92650 1.25156 1.00426 0.99562 1.01722 1.69745 1.25803 1.29212 1.37390 0.85405 0.76425 0.81667 0.77965 1.22722 1.22271 1.20140 0.89729 0.93126 0.88565 0.74648 0.85707 0.82709 0.82693 0.90125 0.87686 0.91549 0.88004 0.92897 0.91210 0.92903 0.92146 0.90876 0.98192 0.94541 0.80020 0.94752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 57. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.31 9.32 71.98 0.67 -2.64 16 2 C 0.13 3.34 2.22 44.25 0.10 3.44 16 3 H 0.13 2.09 5.56 -2.39 -0.01 2.07 16 4 N -1.11 -33.26 5.32 -172.54 -0.92 -34.18 16 5 S 2.62 70.85 6.02 -56.49 -0.34 70.51 16 6 C -0.66 -12.67 10.77 113.37 1.22 -11.45 16 7 O -1.01 -37.52 18.08 -127.65 -2.31 -39.83 16 8 O -0.97 -27.26 17.10 -127.65 -2.18 -29.44 16 9 C 0.48 15.39 6.55 87.66 0.57 15.96 16 10 O -0.50 -22.00 10.01 -3.03 -0.03 -22.03 16 11 N -0.61 -15.73 2.97 -794.18 -2.36 -18.09 16 12 C 0.09 1.38 6.12 86.50 0.53 1.91 16 13 C -0.12 -1.45 5.38 30.82 0.17 -1.28 16 14 C -0.09 -1.30 2.68 -10.77 -0.03 -1.33 16 15 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 16 C -0.14 -1.69 9.19 71.98 0.66 -1.03 16 17 C -0.11 -2.45 4.63 30.67 0.14 -2.31 16 18 C 0.15 4.48 2.90 44.98 0.13 4.61 16 19 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 20 C 0.16 6.54 4.89 86.38 0.42 6.97 16 21 N -0.71 -36.55 3.44 -343.45 -1.18 -37.73 16 22 C -0.20 -11.63 9.51 84.03 0.80 -10.83 16 23 H 0.06 3.28 7.83 -2.91 -0.02 3.26 16 24 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 25 N -0.97 -60.19 13.06 21.65 0.28 -59.91 16 26 Si 0.95 49.57 29.55 68.60 2.03 51.60 16 27 H -0.30 -15.73 7.11 99.48 0.71 -15.03 16 28 H -0.30 -15.29 7.11 99.48 0.71 -14.58 16 29 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 30 H 0.08 1.73 7.41 -2.39 -0.02 1.72 16 31 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.10 1.42 7.42 -2.38 -0.02 1.40 16 33 H 0.42 15.21 8.10 -96.75 -0.78 14.43 16 34 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 35 H 0.15 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.15 1.99 7.43 -2.39 -0.02 1.98 16 37 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.11 1.10 4.96 -2.39 -0.01 1.09 16 39 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 40 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.07 0.63 8.14 -2.38 -0.02 0.62 16 43 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 44 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 45 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.00 0.02 8.09 -2.39 -0.02 0.00 16 47 H 0.04 1.68 6.01 -3.54 -0.02 1.66 16 48 H 0.37 20.07 7.59 -92.71 -0.70 19.37 16 49 H 0.24 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -84.43 391.06 -1.69 -86.12 By element: Atomic # 1 Polarization: 35.69 SS G_CDS: -0.53 Total: 35.16 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: 5.85 Total: -2.17 kcal Atomic # 7 Polarization: -145.73 SS G_CDS: -4.17 Total: -149.91 kcal Atomic # 8 Polarization: -86.78 SS G_CDS: -4.52 Total: -91.30 kcal Atomic # 14 Polarization: 49.57 SS G_CDS: 2.03 Total: 51.60 kcal Atomic # 16 Polarization: 70.85 SS G_CDS: -0.34 Total: 70.51 kcal Total: -84.43 -1.69 -86.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479577954.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.248 kcal (2) G-P(sol) polarization free energy of solvation -84.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.74 seconds