Wall clock time and date at job start Wed Apr 1 2020 04:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47291 * 2 1 4 4 N 1.46502 * 109.47365 * 179.97438 * 3 2 1 5 5 C 1.34775 * 120.00058 * 270.00265 * 4 3 2 6 6 O 1.21282 * 120.00009 * 185.49626 * 5 4 3 7 7 C 1.50699 * 119.99898 * 5.49655 * 5 4 3 8 8 N 1.46502 * 109.46680 * 179.97438 * 7 5 4 9 9 S 1.65600 * 119.99851 * 165.00133 * 8 7 5 10 10 O 1.42095 * 104.27873 * 181.06971 * 9 8 7 11 11 O 1.42103 * 104.27887 * 308.93364 * 9 8 7 12 12 C 1.81402 * 104.44885 * 64.99756 * 9 8 7 13 13 C 1.53003 * 109.47273 * 179.97438 * 12 9 8 14 14 C 1.46505 * 119.99541 * 89.99922 * 4 3 2 15 15 H 1.08997 * 110.77724 * 230.83689 * 14 4 3 16 16 C 1.55156 * 110.71527 * 107.60309 * 14 4 3 17 17 C 1.54907 * 101.58396 * 277.13409 * 16 14 4 18 18 N 1.47429 * 104.83031 * 322.99574 * 17 16 14 19 19 C 1.36932 * 125.64228 * 204.09074 * 18 17 16 20 20 H 1.08009 * 119.99554 * 163.97166 * 19 18 17 21 21 C 1.38813 * 120.00554 * 343.97087 * 19 18 17 22 22 N 1.31615 * 119.99742 * 358.99334 * 21 19 18 23 23 Si 1.86796 * 119.99910 * 178.99290 * 21 19 18 24 24 H 1.48501 * 109.47033 * 94.98455 * 23 21 19 25 25 H 1.48500 * 109.47331 * 214.98045 * 23 21 19 26 26 H 1.48501 * 109.47599 * 334.98327 * 23 21 19 27 27 C 1.47020 * 108.70396 * 24.12711 * 18 17 16 28 28 H 1.08996 * 109.47169 * 300.00469 * 1 2 3 29 29 H 1.09002 * 109.47027 * 59.99979 * 1 2 3 30 30 H 1.08999 * 109.47026 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47334 * 240.00257 * 2 1 3 32 32 H 1.08995 * 109.47340 * 120.00295 * 2 1 3 33 33 H 1.09000 * 109.46721 * 59.99882 * 3 2 1 34 34 H 1.09002 * 109.47103 * 299.99975 * 3 2 1 35 35 H 1.08993 * 109.47064 * 299.99762 * 7 5 4 36 36 H 1.09003 * 109.47088 * 60.00720 * 7 5 4 37 37 H 0.96997 * 120.00203 * 345.00173 * 8 7 5 38 38 H 1.08993 * 109.47811 * 300.00206 * 12 9 8 39 39 H 1.09004 * 109.47337 * 60.00543 * 12 9 8 40 40 H 1.08999 * 109.47082 * 60.00386 * 13 12 9 41 41 H 1.09002 * 109.47459 * 180.02562 * 13 12 9 42 42 H 1.09005 * 109.47206 * 300.00159 * 13 12 9 43 43 H 1.09008 * 110.99902 * 159.06190 * 16 14 4 44 44 H 1.08994 * 111.00475 * 35.21321 * 16 14 4 45 45 H 1.08995 * 110.36700 * 204.15435 * 17 16 14 46 46 H 1.08997 * 110.36364 * 81.83233 * 17 16 14 47 47 H 0.96998 * 120.00075 * 179.97438 * 22 21 19 48 48 H 1.08994 * 109.88529 * 118.35991 * 27 18 17 49 49 H 1.09004 * 109.87953 * 239.52557 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1784 1.4427 1.1681 6 8 5.3871 1.5433 1.1710 7 6 3.4296 1.3178 2.4699 8 7 4.3802 1.3429 3.5843 9 16 3.8389 1.5965 5.1287 10 8 5.0187 1.5811 5.9205 11 8 3.0369 2.7655 5.0315 12 6 2.8100 0.1472 5.4913 13 6 2.2451 0.2643 6.9084 14 6 4.2380 1.4423 -1.2679 15 1 4.9887 0.6522 -1.2806 16 6 4.8926 2.8256 -1.5238 17 6 3.7103 3.6217 -2.1305 18 7 2.9857 2.6449 -2.9637 19 6 2.1821 2.9468 -4.0305 20 1 1.9034 2.1744 -4.7322 21 6 1.7256 4.2453 -4.2103 22 7 2.0489 5.1822 -3.3443 23 14 0.6525 4.6629 -5.6811 24 1 -0.7774 4.5919 -5.2866 25 1 0.9688 6.0356 -6.1509 26 1 0.9128 3.6930 -6.7751 27 6 3.2681 1.2933 -2.4589 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 2.7314 2.1489 2.5685 36 1 2.8791 0.3771 2.4836 37 1 5.3266 1.2111 3.4176 38 1 1.9894 0.0959 4.7758 39 1 3.4151 -0.7563 5.4155 40 1 1.6400 1.1677 6.9848 41 1 1.6272 -0.6067 7.1265 42 1 3.0661 0.3153 7.6237 43 1 5.7143 2.7433 -2.2353 44 1 5.2296 3.2769 -0.5906 45 1 4.0811 4.4427 -2.7441 46 1 3.0626 4.0004 -1.3398 47 1 1.7302 6.0897 -3.4701 48 1 2.3436 0.8207 -2.1272 49 1 3.7325 0.6945 -3.2424 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481402031.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:08 Heat of formation + Delta-G solvation = -76.962631 kcal Electronic energy + Delta-G solvation = -30361.678830 eV Core-core repulsion = 26259.105557 eV Total energy + Delta-G solvation = -4102.573273 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.26083 -37.66996 -37.32140 -36.19033 -35.49313 -34.84092 -33.56197 -33.00547 -31.84592 -29.33163 -28.15944 -26.65838 -26.17904 -24.46710 -24.17651 -21.75296 -20.99515 -20.15612 -19.64232 -18.76647 -18.05711 -17.19399 -16.94005 -16.82585 -16.32655 -15.95501 -15.58263 -15.28710 -14.97708 -14.54204 -14.43559 -14.06450 -13.73354 -13.65805 -13.46138 -13.06740 -12.90211 -12.85591 -12.60210 -12.36527 -12.31424 -12.21726 -12.13303 -11.99051 -11.75424 -11.69091 -11.54714 -11.38733 -11.03739 -10.98852 -10.91442 -10.70711 -10.69757 -10.28621 -10.10112 -9.99083 -9.83663 -9.76078 -9.57742 -8.65166 -8.36370 -6.81947 -5.80130 -3.17185 -0.05367 2.38171 2.64800 3.12419 3.35081 3.41278 3.43195 3.51000 3.86549 4.17384 4.33637 4.42153 4.43807 4.74421 4.78073 4.94194 5.03863 5.08915 5.13179 5.21421 5.25753 5.31982 5.36663 5.39439 5.49177 5.51810 5.53712 5.66824 5.74394 5.81674 5.89242 6.07023 6.14426 6.25038 6.29101 6.38581 6.54199 6.62144 6.69250 6.77065 6.97169 7.47132 7.58182 7.59133 7.75562 8.21461 8.23815 9.13709 9.74416 10.43260 11.32115 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016784 B = 0.002781 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.859026 B =10064.243647 C =10415.251992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.142 4.142 3 C 0.090 3.910 4 N -0.586 5.586 5 C 0.512 3.488 6 O -0.535 6.535 7 C 0.094 3.906 8 N -1.108 6.108 9 S 2.614 3.386 10 O -0.954 6.954 11 O -0.951 6.951 12 C -0.634 4.634 13 C -0.147 4.147 14 C 0.136 3.864 15 H 0.079 0.921 16 C -0.155 4.155 17 C 0.176 3.824 18 N -0.600 5.600 19 C -0.234 4.234 20 H 0.074 0.926 21 C -0.001 4.001 22 N -0.913 5.913 23 Si 0.910 3.090 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.122 3.878 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.114 0.886 35 H 0.110 0.890 36 H 0.093 0.907 37 H 0.427 0.573 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.065 0.935 46 H 0.027 0.973 47 H 0.254 0.746 48 H 0.042 0.958 49 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.671 -13.611 16.221 21.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.180 4.180 3 C -0.032 4.032 4 N -0.318 5.318 5 C 0.298 3.702 6 O -0.412 6.412 7 C -0.036 4.036 8 N -0.870 5.870 9 S 2.705 3.295 10 O -0.945 6.945 11 O -0.941 6.941 12 C -0.764 4.764 13 C -0.206 4.206 14 C 0.033 3.967 15 H 0.097 0.903 16 C -0.194 4.194 17 C 0.051 3.949 18 N -0.327 5.327 19 C -0.362 4.362 20 H 0.092 0.908 21 C -0.199 4.199 22 N -0.559 5.559 23 Si 0.740 3.260 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.206 1.206 27 C -0.004 4.004 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.132 0.868 35 H 0.128 0.872 36 H 0.111 0.889 37 H 0.265 0.735 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.084 0.916 46 H 0.045 0.955 47 H 0.064 0.936 48 H 0.059 0.941 49 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -1.117 -12.591 16.666 20.918 hybrid contribution -0.605 -0.468 -1.161 1.390 sum -1.722 -13.059 15.505 20.345 Atomic orbital electron populations 1.21703 0.94986 1.01632 1.02568 1.22041 0.96445 0.97198 1.02329 1.21959 0.78959 0.96976 1.05343 1.47915 1.06948 1.71519 1.05375 1.20180 0.87956 0.77092 0.84978 1.90675 1.13980 1.49789 1.86786 1.21228 0.92154 1.03946 0.86299 1.55374 1.18303 1.90980 1.22366 1.04972 0.75182 0.76648 0.72684 1.93615 1.45492 1.87391 1.67966 1.93626 1.72007 1.43308 1.85167 1.30531 1.16206 1.22444 1.07170 1.21505 1.02375 1.04621 0.92070 1.22039 0.93877 0.98687 0.82125 0.90289 1.23357 0.99551 0.95784 1.00712 1.21393 0.88738 0.91616 0.93158 1.44464 1.54773 0.99406 1.34058 1.18952 1.22264 0.94581 1.00409 0.90836 1.24919 0.99833 0.96514 0.98603 1.69942 1.48298 1.01586 1.36124 0.86145 0.80346 0.77585 0.81903 1.21545 1.21706 1.20611 1.21733 0.96034 0.90340 0.92287 0.92715 0.91764 0.92732 0.90937 0.92495 0.90837 0.86809 0.87216 0.88909 0.73450 0.84926 0.84796 0.90794 0.89964 0.90929 0.91477 0.91410 0.91622 0.95452 0.93610 0.94066 0.95002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 37.16 0.37 -1.07 16 2 C -0.14 -1.48 5.90 -26.73 -0.16 -1.63 16 3 C 0.09 1.21 4.44 -4.04 -0.02 1.19 16 4 N -0.59 -8.77 2.58 -164.02 -0.42 -9.19 16 5 C 0.51 7.46 7.45 -10.99 -0.08 7.38 16 6 O -0.54 -9.35 14.85 5.56 0.08 -9.27 16 7 C 0.09 0.98 5.30 -5.19 -0.03 0.95 16 8 N -1.11 -11.52 5.82 -11.66 -0.07 -11.59 16 9 S 2.61 25.63 5.46 -107.50 -0.59 25.04 16 10 O -0.95 -12.37 18.08 -57.54 -1.04 -13.41 16 11 O -0.95 -12.61 17.50 -57.54 -1.01 -13.61 16 12 C -0.63 -3.51 6.79 37.16 0.25 -3.26 16 13 C -0.15 -0.79 9.92 37.16 0.37 -0.42 16 14 C 0.14 2.33 3.18 -66.10 -0.21 2.12 16 15 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 16 C -0.15 -3.03 6.53 -24.58 -0.16 -3.19 16 17 C 0.18 4.14 5.36 -2.53 -0.01 4.12 16 18 N -0.60 -14.24 3.06 -170.08 -0.52 -14.76 16 19 C -0.23 -6.13 10.23 -15.06 -0.15 -6.29 16 20 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 21 C 0.00 -0.03 5.46 -17.43 -0.10 -0.13 16 22 N -0.91 -25.86 10.66 55.49 0.59 -25.27 16 23 Si 0.91 21.27 29.55 -169.99 -5.02 16.24 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 C 0.12 2.31 6.02 -3.07 -0.02 2.29 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.83 6.83 -51.93 -0.35 0.48 16 32 H 0.06 0.48 6.92 -51.93 -0.36 0.12 16 33 H 0.07 0.84 6.48 -51.93 -0.34 0.51 16 34 H 0.11 1.96 6.08 -51.93 -0.32 1.64 16 35 H 0.11 1.11 6.79 -51.93 -0.35 0.76 16 36 H 0.09 0.62 6.92 -51.93 -0.36 0.26 16 37 H 0.43 4.76 7.67 -34.47 -0.26 4.50 16 38 H 0.13 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.13 0.52 8.14 -51.92 -0.42 0.10 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.07 1.29 8.14 -51.92 -0.42 0.86 16 44 H 0.07 1.35 7.16 -51.93 -0.37 0.98 16 45 H 0.07 1.75 7.07 -51.93 -0.37 1.39 16 46 H 0.03 0.70 8.02 -51.93 -0.42 0.28 16 47 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 48 H 0.04 0.73 4.27 -51.93 -0.22 0.51 16 49 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 395.25 15.07 5.96 5.96 Total: -1.00 -34.91 395.25 -9.90 -44.82 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -7.91 Total: 2.97 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 0.05 Total: 2.07 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: -0.42 Total: -60.81 kcal Atomic # 8 Polarization: -34.33 SS G_CDS: -1.96 Total: -36.29 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 25.63 SS G_CDS: -0.59 Total: 25.04 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.91 -9.90 -44.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481402031.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.147 kcal (2) G-P(sol) polarization free energy of solvation -34.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds