Wall clock time and date at job start Wed Apr 1 2020 04:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47291 * 2 1 4 4 N 1.46502 * 109.47365 * 179.97438 * 3 2 1 5 5 C 1.34775 * 120.00058 * 270.00265 * 4 3 2 6 6 O 1.21282 * 120.00009 * 185.49626 * 5 4 3 7 7 C 1.50699 * 119.99898 * 5.49655 * 5 4 3 8 8 N 1.46502 * 109.46680 * 179.97438 * 7 5 4 9 9 S 1.65600 * 119.99851 * 165.00133 * 8 7 5 10 10 O 1.42095 * 104.27873 * 181.06971 * 9 8 7 11 11 O 1.42103 * 104.27887 * 308.93364 * 9 8 7 12 12 C 1.81402 * 104.44885 * 64.99756 * 9 8 7 13 13 C 1.53003 * 109.47273 * 179.97438 * 12 9 8 14 14 C 1.46505 * 119.99541 * 89.99922 * 4 3 2 15 15 H 1.08997 * 110.77724 * 230.83689 * 14 4 3 16 16 C 1.55156 * 110.71527 * 107.60309 * 14 4 3 17 17 C 1.54907 * 101.58396 * 277.13409 * 16 14 4 18 18 N 1.47429 * 104.83031 * 322.99574 * 17 16 14 19 19 C 1.36932 * 125.64228 * 204.09074 * 18 17 16 20 20 H 1.08009 * 119.99554 * 163.97166 * 19 18 17 21 21 C 1.38813 * 120.00554 * 343.97087 * 19 18 17 22 22 N 1.31615 * 119.99742 * 358.99334 * 21 19 18 23 23 Si 1.86796 * 119.99910 * 178.99290 * 21 19 18 24 24 H 1.48501 * 109.47033 * 94.98455 * 23 21 19 25 25 H 1.48500 * 109.47331 * 214.98045 * 23 21 19 26 26 H 1.48501 * 109.47599 * 334.98327 * 23 21 19 27 27 C 1.47020 * 108.70396 * 24.12711 * 18 17 16 28 28 H 1.08996 * 109.47169 * 300.00469 * 1 2 3 29 29 H 1.09002 * 109.47027 * 59.99979 * 1 2 3 30 30 H 1.08999 * 109.47026 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47334 * 240.00257 * 2 1 3 32 32 H 1.08995 * 109.47340 * 120.00295 * 2 1 3 33 33 H 1.09000 * 109.46721 * 59.99882 * 3 2 1 34 34 H 1.09002 * 109.47103 * 299.99975 * 3 2 1 35 35 H 1.08993 * 109.47064 * 299.99762 * 7 5 4 36 36 H 1.09003 * 109.47088 * 60.00720 * 7 5 4 37 37 H 0.96997 * 120.00203 * 345.00173 * 8 7 5 38 38 H 1.08993 * 109.47811 * 300.00206 * 12 9 8 39 39 H 1.09004 * 109.47337 * 60.00543 * 12 9 8 40 40 H 1.08999 * 109.47082 * 60.00386 * 13 12 9 41 41 H 1.09002 * 109.47459 * 180.02562 * 13 12 9 42 42 H 1.09005 * 109.47206 * 300.00159 * 13 12 9 43 43 H 1.09008 * 110.99902 * 159.06190 * 16 14 4 44 44 H 1.08994 * 111.00475 * 35.21321 * 16 14 4 45 45 H 1.08995 * 110.36700 * 204.15435 * 17 16 14 46 46 H 1.08997 * 110.36364 * 81.83233 * 17 16 14 47 47 H 0.96998 * 120.00075 * 179.97438 * 22 21 19 48 48 H 1.08994 * 109.88529 * 118.35991 * 27 18 17 49 49 H 1.09004 * 109.87953 * 239.52557 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1784 1.4427 1.1681 6 8 5.3871 1.5433 1.1710 7 6 3.4296 1.3178 2.4699 8 7 4.3802 1.3429 3.5843 9 16 3.8389 1.5965 5.1287 10 8 5.0187 1.5811 5.9205 11 8 3.0369 2.7655 5.0315 12 6 2.8100 0.1472 5.4913 13 6 2.2451 0.2643 6.9084 14 6 4.2380 1.4423 -1.2679 15 1 4.9887 0.6522 -1.2806 16 6 4.8926 2.8256 -1.5238 17 6 3.7103 3.6217 -2.1305 18 7 2.9857 2.6449 -2.9637 19 6 2.1821 2.9468 -4.0305 20 1 1.9034 2.1744 -4.7322 21 6 1.7256 4.2453 -4.2103 22 7 2.0489 5.1822 -3.3443 23 14 0.6525 4.6629 -5.6811 24 1 -0.7774 4.5919 -5.2866 25 1 0.9688 6.0356 -6.1509 26 1 0.9128 3.6930 -6.7751 27 6 3.2681 1.2933 -2.4589 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 2.7314 2.1489 2.5685 36 1 2.8791 0.3771 2.4836 37 1 5.3266 1.2111 3.4176 38 1 1.9894 0.0959 4.7758 39 1 3.4151 -0.7563 5.4155 40 1 1.6400 1.1677 6.9848 41 1 1.6272 -0.6067 7.1265 42 1 3.0661 0.3153 7.6237 43 1 5.7143 2.7433 -2.2353 44 1 5.2296 3.2769 -0.5906 45 1 4.0811 4.4427 -2.7441 46 1 3.0626 4.0004 -1.3398 47 1 1.7302 6.0897 -3.4701 48 1 2.3436 0.8207 -2.1272 49 1 3.7325 0.6945 -3.2424 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481402031.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:07 Heat of formation + Delta-G solvation = -103.468605 kcal Electronic energy + Delta-G solvation = -30362.828215 eV Core-core repulsion = 26259.105557 eV Total energy + Delta-G solvation = -4103.722659 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.48702 -39.09770 -38.19734 -37.05054 -36.78326 -35.76693 -34.48340 -33.98969 -33.28376 -31.05687 -29.62659 -27.80972 -27.38330 -25.91311 -24.91533 -22.68298 -22.35062 -21.90897 -20.42841 -19.92421 -19.02065 -18.80424 -18.21121 -17.77223 -17.16833 -16.98060 -16.82932 -16.59605 -16.09846 -15.80545 -15.50879 -15.18747 -14.90582 -14.66999 -14.31492 -14.14232 -14.01147 -13.92299 -13.71990 -13.42549 -13.34424 -13.23830 -13.16118 -13.10137 -12.93938 -12.83847 -12.72743 -12.66344 -12.44125 -12.34950 -12.15981 -11.98824 -11.92228 -11.77444 -11.66897 -11.57758 -11.43738 -10.88242 -10.66746 -10.49899 -9.61843 -8.79017 -7.85827 -5.23711 -0.75648 1.48265 1.49134 1.53156 1.58227 1.59987 2.03123 2.50675 2.83231 3.22171 3.31765 3.35357 3.68821 3.73283 3.81464 3.93207 3.99681 4.03978 4.13654 4.23559 4.27456 4.30083 4.42279 4.48313 4.53720 4.62671 4.65435 4.70111 4.77478 4.85964 4.89856 4.96236 5.03357 5.08097 5.09812 5.16906 5.28415 5.37062 5.47588 5.51544 5.60189 5.66552 5.72130 5.91910 6.22052 6.44030 7.08524 7.09720 7.76762 8.45133 9.25822 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016784 B = 0.002781 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.859026 B =10064.243647 C =10415.251992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.133 4.133 3 C 0.090 3.910 4 N -0.589 5.589 5 C 0.508 3.492 6 O -0.569 6.569 7 C 0.093 3.907 8 N -1.113 6.113 9 S 2.609 3.391 10 O -0.996 6.996 11 O -0.996 6.996 12 C -0.601 4.601 13 C -0.162 4.162 14 C 0.148 3.852 15 H 0.097 0.903 16 C -0.143 4.143 17 C 0.191 3.809 18 N -0.616 5.616 19 C -0.238 4.238 20 H 0.081 0.919 21 C -0.059 4.059 22 N -0.946 5.946 23 Si 0.974 3.026 24 H -0.285 1.285 25 H -0.300 1.300 26 H -0.268 1.268 27 C 0.123 3.877 28 H 0.069 0.931 29 H 0.037 0.963 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.070 0.930 35 H 0.113 0.887 36 H 0.144 0.856 37 H 0.423 0.577 38 H 0.165 0.835 39 H 0.162 0.838 40 H 0.071 0.929 41 H 0.107 0.893 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.061 0.939 45 H 0.024 0.976 46 H -0.001 1.001 47 H 0.246 0.754 48 H 0.060 0.940 49 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.241 -17.110 17.269 24.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.171 4.171 3 C -0.032 4.032 4 N -0.320 5.320 5 C 0.295 3.705 6 O -0.449 6.449 7 C -0.036 4.036 8 N -0.874 5.874 9 S 2.706 3.294 10 O -0.987 6.987 11 O -0.986 6.986 12 C -0.735 4.735 13 C -0.221 4.221 14 C 0.044 3.956 15 H 0.114 0.886 16 C -0.183 4.183 17 C 0.065 3.935 18 N -0.342 5.342 19 C -0.367 4.367 20 H 0.099 0.901 21 C -0.252 4.252 22 N -0.594 5.594 23 Si 0.803 3.197 24 H -0.211 1.211 25 H -0.227 1.227 26 H -0.193 1.193 27 C -0.002 4.002 28 H 0.088 0.912 29 H 0.056 0.944 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.089 0.911 35 H 0.131 0.869 36 H 0.162 0.838 37 H 0.260 0.740 38 H 0.183 0.817 39 H 0.180 0.820 40 H 0.090 0.910 41 H 0.126 0.874 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.080 0.920 45 H 0.042 0.958 46 H 0.017 0.983 47 H 0.055 0.945 48 H 0.077 0.923 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.676 -16.089 17.704 24.072 hybrid contribution -0.131 0.561 -1.445 1.555 sum -2.807 -15.529 16.259 22.658 Atomic orbital electron populations 1.21696 0.94262 1.02647 1.02084 1.21979 0.96895 0.94798 1.03451 1.22024 0.77833 0.99120 1.04263 1.47962 1.07591 1.71644 1.04821 1.20883 0.87795 0.75885 0.85915 1.90663 1.15670 1.51186 1.87353 1.21442 0.91752 1.06715 0.83673 1.55318 1.18178 1.91379 1.22493 1.04950 0.74763 0.77700 0.71940 1.93556 1.47969 1.88454 1.68689 1.93566 1.72374 1.47212 1.85483 1.30271 1.15959 1.19152 1.08117 1.21712 1.02828 1.05770 0.91804 1.21830 0.93703 0.97186 0.82921 0.88553 1.23176 0.98105 0.96928 1.00062 1.21017 0.89524 0.91208 0.91719 1.44636 1.54493 1.01375 1.33741 1.19324 1.21597 0.94717 1.01038 0.90109 1.25693 1.01582 0.96638 1.01335 1.70150 1.49786 1.01465 1.38021 0.85131 0.78620 0.76789 0.79174 1.21143 1.22709 1.19276 1.21866 0.97272 0.87952 0.93096 0.91203 0.94351 0.90914 0.92004 0.89119 0.88846 0.91114 0.86882 0.83822 0.74006 0.81746 0.82045 0.90978 0.87411 0.91141 0.91116 0.92007 0.95765 0.98274 0.94478 0.92260 0.94218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.91 71.98 0.71 -1.65 16 2 C -0.13 -2.30 5.90 30.59 0.18 -2.12 16 3 C 0.09 2.24 4.44 86.38 0.38 2.62 16 4 N -0.59 -16.75 2.58 -791.24 -2.04 -18.79 16 5 C 0.51 13.90 7.45 87.66 0.65 14.55 16 6 O -0.57 -19.47 14.85 -3.03 -0.05 -19.51 16 7 C 0.09 1.67 5.30 85.63 0.45 2.13 16 8 N -1.11 -21.19 5.82 -190.79 -1.11 -22.30 16 9 S 2.61 47.51 5.46 -56.49 -0.31 47.20 16 10 O -1.00 -25.75 18.08 -127.65 -2.31 -28.06 16 11 O -1.00 -25.98 17.50 -127.65 -2.23 -28.22 16 12 C -0.60 -3.93 6.79 71.98 0.49 -3.44 16 13 C -0.16 -1.16 9.92 71.98 0.71 -0.45 16 14 C 0.15 4.94 3.18 46.18 0.15 5.09 16 15 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 16 C -0.14 -5.73 6.53 31.99 0.21 -5.52 16 17 C 0.19 9.40 5.36 86.85 0.47 9.87 16 18 N -0.62 -29.79 3.06 -692.00 -2.12 -31.91 16 19 C -0.24 -12.63 10.23 84.03 0.86 -11.77 16 20 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 21 C -0.06 -3.23 5.46 84.86 0.46 -2.76 16 22 N -0.95 -55.89 10.66 21.65 0.23 -55.66 16 23 Si 0.97 44.44 29.55 68.60 2.03 46.47 16 24 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 25 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 26 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 27 C 0.12 4.56 6.02 86.73 0.52 5.09 16 28 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.06 1.22 6.83 -2.39 -0.02 1.21 16 32 H 0.09 0.99 6.92 -2.39 -0.02 0.97 16 33 H 0.09 1.93 6.48 -2.39 -0.02 1.91 16 34 H 0.07 2.44 6.08 -2.39 -0.01 2.42 16 35 H 0.11 2.00 6.79 -2.39 -0.02 1.99 16 36 H 0.14 1.07 6.92 -2.39 -0.02 1.06 16 37 H 0.42 9.11 7.67 -96.75 -0.74 8.36 16 38 H 0.16 0.16 8.14 -2.39 -0.02 0.14 16 39 H 0.16 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 42 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 43 H 0.07 2.75 8.14 -2.38 -0.02 2.73 16 44 H 0.06 2.54 7.16 -2.39 -0.02 2.52 16 45 H 0.02 1.37 7.07 -2.39 -0.02 1.35 16 46 H 0.00 -0.04 8.02 -2.39 -0.02 -0.06 16 47 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 48 H 0.06 2.04 4.27 -2.39 -0.01 2.03 16 49 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 Total: -1.00 -81.08 395.25 -1.44 -82.52 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 0.21 Total: 16.63 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: 6.25 Total: 11.63 kcal Atomic # 7 Polarization: -123.62 SS G_CDS: -5.04 Total: -128.66 kcal Atomic # 8 Polarization: -71.20 SS G_CDS: -4.59 Total: -75.79 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Atomic # 16 Polarization: 47.51 SS G_CDS: -0.31 Total: 47.20 kcal Total: -81.08 -1.44 -82.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481402031.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.951 kcal (2) G-P(sol) polarization free energy of solvation -81.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds