Wall clock time and date at job start Wed Apr 1 2020 05:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.50117 * 2 1 4 4 C 1.52767 * 109.59166 * 240.05110 * 2 1 3 5 5 N 1.46924 * 109.00858 * 185.53436 * 4 2 1 6 6 C 1.34776 * 120.63268 * 233.57965 * 5 4 2 7 7 O 1.21277 * 119.99700 * 2.98725 * 6 5 4 8 8 C 1.50696 * 119.99901 * 182.98234 * 6 5 4 9 9 C 1.53003 * 109.47046 * 184.07799 * 8 6 5 10 10 C 1.53003 * 109.47359 * 64.08157 * 8 6 5 11 11 N 1.46497 * 109.47544 * 304.07607 * 8 6 5 12 12 S 1.65598 * 120.00099 * 292.00689 * 11 8 6 13 13 C 1.81400 * 104.45267 * 60.78678 * 12 11 8 14 14 O 1.42102 * 104.27824 * 176.86043 * 12 11 8 15 15 O 1.42101 * 104.27732 * 304.71424 * 12 11 8 16 16 C 1.46932 * 118.73929 * 53.30999 * 5 4 2 17 17 C 1.53189 * 108.77298 * 306.64389 * 16 5 4 18 18 C 1.53038 * 109.49875 * 120.06867 * 2 1 3 19 19 H 1.09002 * 109.44937 * 301.36260 * 18 2 1 20 20 N 1.46497 * 109.45873 * 61.32898 * 18 2 1 21 21 C 1.36937 * 120.00005 * 205.06749 * 20 18 2 22 22 H 1.08005 * 119.99904 * 0.02562 * 21 20 18 23 23 C 1.38811 * 120.00199 * 180.02562 * 21 20 18 24 24 N 1.31626 * 120.00052 * 180.02562 * 23 21 20 25 25 Si 1.86795 * 120.00145 * 359.97438 * 23 21 20 26 26 H 1.48493 * 109.47227 * 90.00092 * 25 23 21 27 27 H 1.48500 * 109.47490 * 210.00457 * 25 23 21 28 28 H 1.48502 * 109.46854 * 330.00370 * 25 23 21 29 29 H 1.09003 * 109.47130 * 299.92901 * 1 2 3 30 30 H 1.08997 * 109.47253 * 59.93245 * 1 2 3 31 31 H 1.08994 * 109.47101 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.51020 * 65.65393 * 4 2 1 33 33 H 1.08997 * 109.42919 * 305.36936 * 4 2 1 34 34 H 1.09001 * 109.47395 * 291.98510 * 9 8 6 35 35 H 1.08998 * 109.47376 * 171.98220 * 9 8 6 36 36 H 1.09003 * 109.47133 * 51.98250 * 9 8 6 37 37 H 1.08994 * 109.47056 * 185.82228 * 10 8 6 38 38 H 1.08999 * 109.46513 * 305.81608 * 10 8 6 39 39 H 1.09002 * 109.46690 * 65.81870 * 10 8 6 40 40 H 0.97004 * 120.00104 * 112.00213 * 11 8 6 41 41 H 1.09008 * 109.47081 * 63.65046 * 13 12 11 42 42 H 1.09000 * 109.47258 * 183.65166 * 13 12 11 43 43 H 1.08998 * 109.46936 * 303.65722 * 13 12 11 44 44 H 1.09003 * 109.58325 * 66.42917 * 16 5 4 45 45 H 1.08995 * 109.59074 * 186.70733 * 16 5 4 46 46 H 1.08998 * 109.49712 * 174.58419 * 17 16 5 47 47 H 1.09000 * 109.49524 * 294.64647 * 17 16 5 48 48 H 0.97003 * 120.00428 * 25.07065 * 20 18 2 49 49 H 0.96995 * 119.99987 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0422 -0.7185 -1.2470 5 7 3.5053 -0.8282 -1.1691 6 6 4.2819 -0.3844 -2.1772 7 8 3.7777 0.1601 -3.1365 8 6 5.7766 -0.5647 -2.1124 9 6 6.4248 0.1116 -3.3222 10 6 6.1112 -2.0577 -2.1229 11 7 6.2888 0.0420 -0.8813 12 16 6.2464 1.6861 -0.6886 13 6 4.4841 2.1069 -0.7768 14 8 6.7445 1.8980 0.6253 15 8 6.9368 2.1900 -1.8238 16 6 4.1060 -1.4255 0.0315 17 6 3.5708 -0.6940 1.2665 18 6 2.0408 -0.7228 1.2485 19 1 1.6577 -0.2241 2.1388 20 7 1.5790 -2.1130 1.2308 21 6 1.4475 -2.8057 2.4047 22 1 1.6839 -2.3271 3.3436 23 6 1.0104 -4.1231 2.3880 24 7 0.8835 -4.7888 3.5163 25 14 0.6009 -4.9508 0.7642 26 1 1.8174 -5.6083 0.2231 27 1 -0.4576 -5.9695 0.9809 28 1 0.1173 -3.9324 -0.2023 29 1 -0.3633 0.5127 0.8906 30 1 -0.3633 0.5149 -0.8893 31 1 -0.3633 -1.0276 -0.0005 32 1 1.7652 -0.1496 -2.1346 33 1 1.6032 -1.7149 -1.2974 34 1 6.1552 -0.4299 -4.2289 35 1 7.5084 0.1060 -3.2043 36 1 6.0726 1.1405 -3.3952 37 1 7.1824 -2.1910 -1.9721 38 1 5.5666 -2.5576 -1.3218 39 1 5.8228 -2.4879 -3.0820 40 1 6.6528 -0.5195 -0.1789 41 1 3.9573 1.6421 0.0567 42 1 4.3658 3.1892 -0.7231 43 1 4.0701 1.7423 -1.7169 44 1 3.8387 -2.4807 0.0873 45 1 5.1904 -1.3252 -0.0140 46 1 3.9334 -1.1885 2.1677 47 1 3.9159 0.3398 1.2549 48 1 1.3663 -2.5428 0.3876 49 1 0.5778 -5.7093 3.5047 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482434874.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:15 Heat of formation + Delta-G solvation = -93.446401 kcal Electronic energy + Delta-G solvation = -32539.827994 eV Core-core repulsion = 28436.539931 eV Total energy + Delta-G solvation = -4103.288063 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.08411 -39.61352 -38.27275 -37.60826 -37.07197 -35.92587 -34.39027 -33.14821 -31.81993 -31.45566 -30.46420 -28.58395 -27.62569 -26.88382 -25.06715 -23.61559 -23.06773 -21.05453 -20.61965 -19.95177 -19.62091 -18.89396 -18.33293 -17.52956 -17.22397 -16.78586 -16.60835 -16.42781 -16.06712 -15.65925 -15.51743 -15.15647 -15.04842 -14.67555 -14.51106 -14.43835 -14.11490 -13.85748 -13.74469 -13.54549 -13.35267 -13.29573 -13.17132 -13.06531 -12.96105 -12.92369 -12.85862 -12.77333 -12.58888 -12.40862 -12.23056 -11.99516 -11.97564 -11.94111 -11.79723 -11.66029 -11.54860 -11.18618 -10.92352 -10.26090 -9.69719 -9.22784 -7.96348 -5.27536 -0.80640 1.12983 1.37468 1.39341 1.47188 1.74814 1.84502 2.50738 2.67703 3.13250 3.22764 3.36104 3.58834 3.62351 3.74262 3.87548 3.88985 3.94388 3.99113 4.01816 4.17105 4.24906 4.32096 4.45616 4.55060 4.68309 4.72668 4.77835 4.79171 4.81732 4.84521 4.94729 4.97486 5.03010 5.11745 5.15208 5.19231 5.26440 5.29498 5.38558 5.43282 5.58132 5.86352 5.91160 6.26691 6.30471 6.94267 7.14736 7.91056 8.09228 9.25510 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015603 B = 0.004167 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.134906 B = 6717.598153 C = 6872.753728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.106 4.106 3 H 0.095 0.905 4 C 0.113 3.887 5 N -0.590 5.590 6 C 0.495 3.505 7 O -0.558 6.558 8 C 0.166 3.834 9 C -0.156 4.156 10 C -0.158 4.158 11 N -1.099 6.099 12 S 2.617 3.383 13 C -0.685 4.685 14 O -0.982 6.982 15 O -0.974 6.974 16 C 0.095 3.905 17 C -0.153 4.153 18 C 0.176 3.824 19 H 0.049 0.951 20 N -0.739 5.739 21 C -0.211 4.211 22 H 0.060 0.940 23 C -0.059 4.059 24 N -0.985 5.985 25 Si 0.939 3.061 26 H -0.279 1.279 27 H -0.306 1.306 28 H -0.255 1.255 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.042 0.958 32 H 0.095 0.905 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.103 0.897 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.434 0.566 41 H 0.142 0.858 42 H 0.155 0.845 43 H 0.133 0.867 44 H 0.067 0.933 45 H 0.120 0.880 46 H 0.071 0.929 47 H 0.075 0.925 48 H 0.363 0.637 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.090 11.438 -13.346 20.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.126 4.126 3 H 0.113 0.887 4 C -0.010 4.010 5 N -0.321 5.321 6 C 0.281 3.719 7 O -0.437 6.437 8 C 0.074 3.926 9 C -0.215 4.215 10 C -0.217 4.217 11 N -0.864 5.864 12 S 2.712 3.288 13 C -0.837 4.837 14 O -0.973 6.973 15 O -0.964 6.964 16 C -0.027 4.027 17 C -0.193 4.193 18 C 0.068 3.932 19 H 0.067 0.933 20 N -0.383 5.383 21 C -0.342 4.342 22 H 0.078 0.922 23 C -0.250 4.250 24 N -0.636 5.636 25 Si 0.769 3.231 26 H -0.205 1.205 27 H -0.233 1.233 28 H -0.180 1.180 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.114 0.886 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.121 0.879 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.274 0.726 41 H 0.160 0.840 42 H 0.173 0.827 43 H 0.151 0.849 44 H 0.085 0.915 45 H 0.138 0.862 46 H 0.089 0.911 47 H 0.093 0.907 48 H 0.198 0.802 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 10.510 12.360 -13.640 21.196 hybrid contribution -1.288 -1.533 -0.018 2.002 sum 9.222 10.827 -13.658 19.719 Atomic orbital electron populations 1.21653 0.93948 1.01710 1.02150 1.21672 0.96834 1.00029 0.94070 0.88695 1.21591 0.79317 1.00822 0.99235 1.48199 1.06680 1.59024 1.18179 1.21455 0.90356 0.77866 0.82192 1.90711 1.75699 1.43804 1.33472 1.20436 0.87646 0.98780 0.85746 1.22321 1.01987 1.01457 0.95698 1.22301 1.05185 0.89425 1.04755 1.55790 1.77599 1.26723 1.26298 1.04462 0.77941 0.73291 0.73151 1.30847 1.25177 1.14533 1.13114 1.93601 1.79201 1.84417 1.40053 1.93604 1.71068 1.79376 1.52380 1.22276 0.99871 0.97711 0.82881 1.22536 0.98247 1.00392 0.98137 1.20420 0.92296 0.84220 0.96310 0.93297 1.42749 1.80662 1.10679 1.04225 1.18983 1.34637 0.93714 0.86915 0.92160 1.25298 1.02987 0.97769 0.98964 1.69864 1.55769 1.11041 1.26968 0.85651 0.77614 0.78572 0.81307 1.20509 1.23331 1.17995 0.92308 0.91222 0.93924 0.88638 0.92432 0.90110 0.89498 0.91403 0.87869 0.90521 0.89807 0.72595 0.84024 0.82663 0.84906 0.91483 0.86244 0.91055 0.90662 0.80238 0.93718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 9.06 71.98 0.65 -2.79 16 2 C -0.11 -2.62 2.65 -10.86 -0.03 -2.65 16 3 H 0.09 1.96 7.21 -2.39 -0.02 1.94 16 4 C 0.11 2.80 5.40 86.22 0.47 3.26 16 5 N -0.59 -13.24 2.75 -819.74 -2.26 -15.50 16 6 C 0.49 10.95 3.83 87.66 0.34 11.29 16 7 O -0.56 -15.14 14.13 -3.02 -0.04 -15.18 16 8 C 0.17 2.88 0.73 2.86 0.00 2.88 16 9 C -0.16 -2.90 6.65 71.98 0.48 -2.42 16 10 C -0.16 -2.10 8.25 71.98 0.59 -1.51 16 11 N -1.10 -17.50 3.95 -155.19 -0.61 -18.12 16 12 S 2.62 51.60 5.97 -56.49 -0.34 51.27 16 13 C -0.69 -11.54 9.68 113.37 1.10 -10.44 16 14 O -0.98 -24.79 18.08 -127.65 -2.31 -27.09 16 15 O -0.97 -23.96 14.77 -127.65 -1.88 -25.84 16 16 C 0.10 2.15 4.30 86.36 0.37 2.52 16 17 C -0.15 -3.92 5.74 30.67 0.18 -3.75 16 18 C 0.18 5.39 2.53 45.02 0.11 5.50 16 19 H 0.05 1.64 8.08 -2.39 -0.02 1.62 16 20 N -0.74 -28.99 3.44 -322.81 -1.11 -30.11 16 21 C -0.21 -10.72 10.41 84.03 0.87 -9.84 16 22 H 0.06 3.40 8.06 -2.91 -0.02 3.38 16 23 C -0.06 -3.22 5.50 84.86 0.47 -2.76 16 24 N -0.98 -60.12 13.97 21.65 0.30 -59.82 16 25 Si 0.94 42.64 27.74 68.60 1.90 44.54 16 26 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 27 H -0.31 -14.59 7.11 99.48 0.71 -13.88 16 28 H -0.26 -10.40 6.52 99.48 0.65 -9.75 16 29 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.04 1.28 7.54 -2.39 -0.02 1.26 16 32 H 0.10 2.31 7.00 -2.39 -0.02 2.29 16 33 H 0.06 1.60 6.64 -2.39 -0.02 1.58 16 34 H 0.08 1.38 8.12 -2.39 -0.02 1.36 16 35 H 0.09 1.46 8.08 -2.39 -0.02 1.44 16 36 H 0.07 1.51 6.08 -2.39 -0.01 1.49 16 37 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.08 1.08 5.55 -2.39 -0.01 1.07 16 39 H 0.08 1.08 8.12 -2.39 -0.02 1.06 16 40 H 0.43 5.10 7.23 -96.74 -0.70 4.40 16 41 H 0.14 2.27 4.81 -2.39 -0.01 2.26 16 42 H 0.16 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.13 2.58 4.86 -2.39 -0.01 2.57 16 44 H 0.07 1.81 7.70 -2.39 -0.02 1.79 16 45 H 0.12 1.98 3.00 -2.39 -0.01 1.97 16 46 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 47 H 0.08 1.55 5.80 -2.39 -0.01 1.53 16 48 H 0.36 14.05 3.80 -92.71 -0.35 13.70 16 49 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -72.25 366.95 -0.87 -73.12 By element: Atomic # 1 Polarization: 33.56 SS G_CDS: -0.12 Total: 33.45 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: 5.60 Total: -10.71 kcal Atomic # 7 Polarization: -119.86 SS G_CDS: -3.68 Total: -123.54 kcal Atomic # 8 Polarization: -63.88 SS G_CDS: -4.24 Total: -68.12 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 1.90 Total: 44.54 kcal Atomic # 16 Polarization: 51.60 SS G_CDS: -0.34 Total: 51.27 kcal Total: -72.25 -0.87 -73.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482434874.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.330 kcal (2) G-P(sol) polarization free energy of solvation -72.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds