Wall clock time and date at job start Wed Apr 1 2020 05:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.49855 * 2 1 4 4 C 1.53623 * 109.45981 * 120.20970 * 2 1 3 5 5 N 1.46921 * 108.54531 * 174.74035 * 4 2 1 6 6 C 1.34780 * 120.63051 * 126.36734 * 5 4 2 7 7 O 1.21271 * 120.00069 * 354.90964 * 6 5 4 8 8 C 1.50699 * 119.99743 * 175.18269 * 6 5 4 9 9 C 1.53001 * 109.47070 * 79.32235 * 8 6 5 10 10 C 1.52999 * 109.47067 * 199.32280 * 8 6 5 11 11 N 1.46505 * 109.47181 * 319.32282 * 8 6 5 12 12 S 1.65601 * 119.99737 * 158.96189 * 11 8 6 13 13 C 1.81404 * 104.45006 * 59.66445 * 12 11 8 14 14 O 1.42099 * 104.27424 * 175.73347 * 12 11 8 15 15 O 1.42104 * 104.28024 * 303.59336 * 12 11 8 16 16 C 1.46928 * 118.73875 * 306.09244 * 5 4 2 17 17 C 1.53193 * 108.77513 * 53.86206 * 16 5 4 18 18 C 1.53037 * 109.49580 * 239.93547 * 2 1 3 19 19 H 1.09005 * 109.45820 * 58.63425 * 18 2 1 20 20 N 1.46498 * 109.46308 * 298.67081 * 18 2 1 21 21 C 1.36931 * 120.00023 * 154.93010 * 20 18 2 22 22 H 1.08001 * 120.00183 * 0.02562 * 21 20 18 23 23 C 1.38814 * 120.00162 * 180.02562 * 21 20 18 24 24 N 1.31620 * 119.99612 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00419 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47259 * 59.99596 * 25 23 21 27 27 H 1.48500 * 109.47589 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47268 * 299.99803 * 25 23 21 29 29 H 1.08991 * 109.47244 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47108 * 300.06383 * 1 2 3 31 31 H 1.09001 * 109.47389 * 60.06131 * 1 2 3 32 32 H 1.08998 * 109.73625 * 54.99797 * 4 2 1 33 33 H 1.09006 * 109.66404 * 294.43310 * 4 2 1 34 34 H 1.09005 * 109.46978 * 60.00287 * 9 8 6 35 35 H 1.08997 * 109.47099 * 179.97438 * 9 8 6 36 36 H 1.08994 * 109.47197 * 299.99995 * 9 8 6 37 37 H 1.09001 * 109.47068 * 67.56003 * 10 8 6 38 38 H 1.09000 * 109.47154 * 187.56162 * 10 8 6 39 39 H 1.08995 * 109.46886 * 307.55971 * 10 8 6 40 40 H 0.96987 * 119.99904 * 338.96315 * 11 8 6 41 41 H 1.08997 * 109.47183 * 51.24614 * 13 12 11 42 42 H 1.08995 * 109.47106 * 171.25240 * 13 12 11 43 43 H 1.09002 * 109.46545 * 291.25060 * 13 12 11 44 44 H 1.08994 * 109.58735 * 173.64758 * 16 5 4 45 45 H 1.09000 * 109.58681 * 294.07292 * 16 5 4 46 46 H 1.08996 * 109.49918 * 65.31338 * 17 16 5 47 47 H 1.08994 * 109.50179 * 185.41796 * 17 16 5 48 48 H 0.97001 * 119.99781 * 334.93737 * 20 18 2 49 49 H 0.97008 * 119.99897 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0418 -0.7288 1.2518 5 7 3.5053 -0.8284 1.1689 6 6 4.2819 -0.3854 2.1775 7 8 3.7807 0.1841 3.1236 8 6 5.7737 -0.5923 2.1265 9 6 6.4035 0.4595 1.2111 10 6 6.3558 -0.4569 3.5350 11 7 6.0636 -1.9303 1.6049 12 16 7.5492 -2.2604 0.9517 13 6 8.7184 -1.9396 2.3011 14 8 7.5003 -3.6489 0.6539 15 8 7.7009 -1.2947 -0.0797 16 6 4.1059 -1.4255 -0.0316 17 6 3.5709 -0.6940 -1.2667 18 6 2.0407 -0.7227 -1.2485 19 1 1.6576 -0.2241 -2.1390 20 7 1.5790 -2.1129 -1.2311 21 6 1.4474 -2.8055 -2.4050 22 1 1.6845 -2.3270 -3.3437 23 6 1.0093 -4.1226 -2.3885 24 7 0.7209 -4.7058 -1.2444 25 14 0.8305 -5.0676 -3.9897 26 1 2.1468 -5.1359 -4.6739 27 1 0.3509 -6.4432 -3.7019 28 1 -0.1477 -4.3752 -4.8666 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5148 0.8894 31 1 -0.3634 0.5129 -0.8905 32 1 1.6095 -1.7284 1.2982 33 1 1.7637 -0.1664 2.1431 34 1 6.1878 1.4550 1.5992 35 1 7.4826 0.3101 1.1746 36 1 5.9888 0.3630 0.2077 37 1 6.0105 -1.2864 4.1521 38 1 7.4443 -0.4724 3.4813 39 1 6.0271 0.4847 3.9749 40 1 5.3855 -2.6227 1.6421 41 1 8.3985 -2.4762 3.1943 42 1 9.7120 -2.2793 2.0093 43 1 8.7469 -0.8702 2.5105 44 1 5.1901 -1.3230 0.0126 45 1 3.8387 -2.4808 -0.0876 46 1 3.9154 0.3400 -1.2547 47 1 3.9333 -1.1883 -2.1679 48 1 1.3663 -2.5427 -0.3879 49 1 0.4151 -5.6264 -1.2327 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482434876.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:21 Heat of formation + Delta-G solvation = -70.631884 kcal Electronic energy + Delta-G solvation = -31866.390514 eV Core-core repulsion = 27764.091762 eV Total energy + Delta-G solvation = -4102.298752 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.71549 -38.11193 -37.40964 -36.52146 -36.06113 -34.24838 -32.73220 -31.37919 -30.94834 -29.84722 -29.16293 -27.53950 -26.50276 -25.22172 -23.51896 -22.61300 -21.65398 -19.79062 -19.44757 -18.59091 -17.66597 -17.40760 -17.17034 -16.62133 -15.94143 -15.64640 -15.15661 -14.83085 -14.63647 -14.41795 -14.07780 -13.96182 -13.70060 -13.58752 -13.47061 -13.22279 -13.14337 -12.81654 -12.56054 -12.49301 -12.26671 -12.17710 -12.08708 -11.83011 -11.79032 -11.53764 -11.40170 -11.34411 -11.19003 -11.14213 -10.87226 -10.75302 -10.53874 -10.48305 -10.19749 -9.91792 -9.82472 -9.53843 -9.28031 -8.87561 -8.26558 -6.95558 -5.77126 -3.05183 0.01659 2.25383 2.80976 3.11565 3.44999 3.50302 3.50392 3.58187 3.92349 4.20486 4.41475 4.54400 4.60137 4.61492 4.72794 4.91381 5.17516 5.23576 5.29596 5.32923 5.37705 5.49334 5.55004 5.58823 5.63161 5.72750 5.75735 5.84765 5.92537 5.95189 6.04042 6.06601 6.13207 6.24463 6.35396 6.44071 6.50081 6.57900 6.69482 6.72431 6.78399 6.95180 7.01175 7.64011 7.71009 8.24383 8.41647 9.53373 10.09530 10.44720 11.45315 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011671 B = 0.004347 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.533409 B = 6439.608013 C = 7993.054526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.107 4.107 3 H 0.066 0.934 4 C 0.116 3.884 5 N -0.589 5.589 6 C 0.521 3.479 7 O -0.545 6.545 8 C 0.162 3.838 9 C -0.176 4.176 10 C -0.167 4.167 11 N -1.110 6.110 12 S 2.608 3.392 13 C -0.681 4.681 14 O -0.951 6.951 15 O -0.946 6.946 16 C 0.092 3.908 17 C -0.150 4.150 18 C 0.177 3.823 19 H 0.051 0.949 20 N -0.718 5.718 21 C -0.238 4.238 22 H 0.069 0.931 23 C -0.011 4.011 24 N -0.933 5.933 25 Si 0.904 3.096 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.287 1.287 29 H 0.070 0.930 30 H 0.043 0.957 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.427 0.573 41 H 0.132 0.868 42 H 0.129 0.871 43 H 0.133 0.867 44 H 0.093 0.907 45 H 0.084 0.916 46 H 0.049 0.951 47 H 0.075 0.925 48 H 0.383 0.617 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.547 10.085 9.809 20.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.127 4.127 3 H 0.084 0.916 4 C -0.006 4.006 5 N -0.320 5.320 6 C 0.306 3.694 7 O -0.423 6.423 8 C 0.070 3.930 9 C -0.234 4.234 10 C -0.226 4.226 11 N -0.871 5.871 12 S 2.699 3.301 13 C -0.830 4.830 14 O -0.941 6.941 15 O -0.936 6.936 16 C -0.030 4.030 17 C -0.192 4.192 18 C 0.067 3.933 19 H 0.069 0.931 20 N -0.360 5.360 21 C -0.369 4.369 22 H 0.087 0.913 23 C -0.207 4.207 24 N -0.582 5.582 25 Si 0.736 3.264 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.214 1.214 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.109 0.891 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.105 0.895 40 H 0.264 0.736 41 H 0.151 0.849 42 H 0.147 0.853 43 H 0.151 0.849 44 H 0.110 0.890 45 H 0.102 0.898 46 H 0.068 0.932 47 H 0.094 0.906 48 H 0.218 0.782 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.549 10.143 9.245 20.000 hybrid contribution -0.281 -0.979 -0.018 1.018 sum 14.268 9.164 9.227 19.305 Atomic orbital electron populations 1.21665 0.94269 1.03165 1.00391 1.21770 0.96445 0.98813 0.95688 0.91584 1.21808 0.78408 1.01644 0.98731 1.48129 1.07105 1.58853 1.17928 1.20161 0.87845 0.78997 0.82414 1.90675 1.74597 1.42849 1.34169 1.20404 0.94202 0.82738 0.95634 1.22637 1.01816 0.98209 1.00768 1.22455 1.00606 1.05045 0.94470 1.55993 1.32377 1.18797 1.79974 1.05053 0.74645 0.74265 0.76111 1.30826 1.18289 1.12295 1.21614 1.93656 1.85296 1.32050 1.83087 1.93674 1.85425 1.62154 1.52345 1.22326 0.98423 0.98828 0.83449 1.22541 1.00239 0.98760 0.97626 1.20236 0.90895 0.87358 0.94801 0.93146 1.42451 1.79035 1.07678 1.06883 1.19173 1.37229 0.93911 0.86567 0.91312 1.24685 1.02248 0.97146 0.96596 1.69633 1.51749 1.13070 1.23704 0.86313 0.77773 0.79184 0.83164 1.21313 1.21821 1.21411 0.91050 0.93828 0.92826 0.90450 0.89753 0.90282 0.90334 0.89076 0.90995 0.91367 0.89467 0.73569 0.84890 0.85263 0.84863 0.88955 0.89818 0.93218 0.90646 0.78155 0.93506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.05 37.16 0.34 -1.84 16 2 C -0.11 -1.74 2.68 -90.28 -0.24 -1.98 16 3 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 4 C 0.12 1.90 5.45 -3.49 -0.02 1.88 16 5 N -0.59 -9.04 2.94 -172.51 -0.51 -9.54 16 6 C 0.52 7.49 6.50 -10.98 -0.07 7.41 16 7 O -0.55 -9.13 15.28 5.56 0.09 -9.04 16 8 C 0.16 1.74 0.73 -132.97 -0.10 1.64 16 9 C -0.18 -1.77 6.85 37.16 0.25 -1.52 16 10 C -0.17 -1.39 7.92 37.16 0.29 -1.10 16 11 N -1.11 -11.68 3.09 -0.40 0.00 -11.68 16 12 S 2.61 26.35 5.45 -107.50 -0.59 25.77 16 13 C -0.68 -3.70 9.12 101.05 0.92 -2.77 16 14 O -0.95 -13.56 18.08 -57.54 -1.04 -14.60 16 15 O -0.95 -11.72 13.97 -57.54 -0.80 -12.53 16 16 C 0.09 1.48 4.22 -3.71 -0.02 1.46 16 17 C -0.15 -2.57 5.78 -26.61 -0.15 -2.72 16 18 C 0.18 3.32 2.53 -67.89 -0.17 3.15 16 19 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 20 N -0.72 -16.46 3.64 -53.38 -0.19 -16.66 16 21 C -0.24 -6.24 9.93 -15.06 -0.15 -6.39 16 22 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 23 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 24 N -0.93 -27.12 13.06 55.49 0.72 -26.40 16 25 Si 0.90 22.08 29.55 -169.99 -5.02 17.06 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 29 H 0.07 1.32 7.54 -51.93 -0.39 0.93 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 1.40 6.63 -51.93 -0.34 1.05 16 33 H 0.08 1.37 7.00 -51.93 -0.36 1.00 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.64 5.28 -51.93 -0.27 0.37 16 36 H 0.09 1.08 6.09 -51.93 -0.32 0.76 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.36 4.71 -51.93 -0.24 0.12 16 39 H 0.09 0.79 7.61 -51.93 -0.40 0.39 16 40 H 0.43 4.78 7.62 -34.47 -0.26 4.52 16 41 H 0.13 0.55 8.12 -51.93 -0.42 0.13 16 42 H 0.13 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.13 0.51 5.58 -51.92 -0.29 0.22 16 44 H 0.09 1.32 2.80 -51.93 -0.15 1.17 16 45 H 0.08 1.57 7.74 -51.93 -0.40 1.16 16 46 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 47 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 48 H 0.38 9.34 5.92 -40.82 -0.24 9.10 16 49 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 374.65 15.07 5.65 5.65 Total: -1.00 -33.87 374.65 -8.35 -42.22 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: -7.44 Total: 12.93 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: 0.79 Total: -3.17 kcal Atomic # 7 Polarization: -64.30 SS G_CDS: 0.02 Total: -64.28 kcal Atomic # 8 Polarization: -34.41 SS G_CDS: -1.76 Total: -36.17 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 16 Polarization: 26.35 SS G_CDS: -0.59 Total: 25.77 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.87 -8.35 -42.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482434876.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.412 kcal (2) G-P(sol) polarization free energy of solvation -33.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds