Wall clock time and date at job start Wed Apr 1 2020 05:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.49855 * 2 1 4 4 C 1.53623 * 109.45981 * 120.20970 * 2 1 3 5 5 N 1.46921 * 108.54531 * 174.74035 * 4 2 1 6 6 C 1.34780 * 120.63051 * 126.36734 * 5 4 2 7 7 O 1.21271 * 120.00069 * 354.90964 * 6 5 4 8 8 C 1.50699 * 119.99743 * 175.18269 * 6 5 4 9 9 C 1.53001 * 109.47070 * 79.32235 * 8 6 5 10 10 C 1.52999 * 109.47067 * 199.32280 * 8 6 5 11 11 N 1.46505 * 109.47181 * 319.32282 * 8 6 5 12 12 S 1.65601 * 119.99737 * 158.96189 * 11 8 6 13 13 C 1.81404 * 104.45006 * 59.66445 * 12 11 8 14 14 O 1.42099 * 104.27424 * 175.73347 * 12 11 8 15 15 O 1.42104 * 104.28024 * 303.59336 * 12 11 8 16 16 C 1.46928 * 118.73875 * 306.09244 * 5 4 2 17 17 C 1.53193 * 108.77513 * 53.86206 * 16 5 4 18 18 C 1.53037 * 109.49580 * 239.93547 * 2 1 3 19 19 H 1.09005 * 109.45820 * 58.63425 * 18 2 1 20 20 N 1.46498 * 109.46308 * 298.67081 * 18 2 1 21 21 C 1.36931 * 120.00023 * 154.93010 * 20 18 2 22 22 H 1.08001 * 120.00183 * 0.02562 * 21 20 18 23 23 C 1.38814 * 120.00162 * 180.02562 * 21 20 18 24 24 N 1.31620 * 119.99612 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00419 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47259 * 59.99596 * 25 23 21 27 27 H 1.48500 * 109.47589 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47268 * 299.99803 * 25 23 21 29 29 H 1.08991 * 109.47244 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47108 * 300.06383 * 1 2 3 31 31 H 1.09001 * 109.47389 * 60.06131 * 1 2 3 32 32 H 1.08998 * 109.73625 * 54.99797 * 4 2 1 33 33 H 1.09006 * 109.66404 * 294.43310 * 4 2 1 34 34 H 1.09005 * 109.46978 * 60.00287 * 9 8 6 35 35 H 1.08997 * 109.47099 * 179.97438 * 9 8 6 36 36 H 1.08994 * 109.47197 * 299.99995 * 9 8 6 37 37 H 1.09001 * 109.47068 * 67.56003 * 10 8 6 38 38 H 1.09000 * 109.47154 * 187.56162 * 10 8 6 39 39 H 1.08995 * 109.46886 * 307.55971 * 10 8 6 40 40 H 0.96987 * 119.99904 * 338.96315 * 11 8 6 41 41 H 1.08997 * 109.47183 * 51.24614 * 13 12 11 42 42 H 1.08995 * 109.47106 * 171.25240 * 13 12 11 43 43 H 1.09002 * 109.46545 * 291.25060 * 13 12 11 44 44 H 1.08994 * 109.58735 * 173.64758 * 16 5 4 45 45 H 1.09000 * 109.58681 * 294.07292 * 16 5 4 46 46 H 1.08996 * 109.49918 * 65.31338 * 17 16 5 47 47 H 1.08994 * 109.50179 * 185.41796 * 17 16 5 48 48 H 0.97001 * 119.99781 * 334.93737 * 20 18 2 49 49 H 0.97008 * 119.99897 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0418 -0.7288 1.2518 5 7 3.5053 -0.8284 1.1689 6 6 4.2819 -0.3854 2.1775 7 8 3.7807 0.1841 3.1236 8 6 5.7737 -0.5923 2.1265 9 6 6.4035 0.4595 1.2111 10 6 6.3558 -0.4569 3.5350 11 7 6.0636 -1.9303 1.6049 12 16 7.5492 -2.2604 0.9517 13 6 8.7184 -1.9396 2.3011 14 8 7.5003 -3.6489 0.6539 15 8 7.7009 -1.2947 -0.0797 16 6 4.1059 -1.4255 -0.0316 17 6 3.5709 -0.6940 -1.2667 18 6 2.0407 -0.7227 -1.2485 19 1 1.6576 -0.2241 -2.1390 20 7 1.5790 -2.1129 -1.2311 21 6 1.4474 -2.8055 -2.4050 22 1 1.6845 -2.3270 -3.3437 23 6 1.0093 -4.1226 -2.3885 24 7 0.7209 -4.7058 -1.2444 25 14 0.8305 -5.0676 -3.9897 26 1 2.1468 -5.1359 -4.6739 27 1 0.3509 -6.4432 -3.7019 28 1 -0.1477 -4.3752 -4.8666 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5148 0.8894 31 1 -0.3634 0.5129 -0.8905 32 1 1.6095 -1.7284 1.2982 33 1 1.7637 -0.1664 2.1431 34 1 6.1878 1.4550 1.5992 35 1 7.4826 0.3101 1.1746 36 1 5.9888 0.3630 0.2077 37 1 6.0105 -1.2864 4.1521 38 1 7.4443 -0.4724 3.4813 39 1 6.0271 0.4847 3.9749 40 1 5.3855 -2.6227 1.6421 41 1 8.3985 -2.4762 3.1943 42 1 9.7120 -2.2793 2.0093 43 1 8.7469 -0.8702 2.5105 44 1 5.1901 -1.3230 0.0126 45 1 3.8387 -2.4808 -0.0876 46 1 3.9154 0.3400 -1.2547 47 1 3.9333 -1.1883 -2.1679 48 1 1.3663 -2.5427 -0.3879 49 1 0.4151 -5.6264 -1.2327 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482434876.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:20 Heat of formation + Delta-G solvation = -96.538547 kcal Electronic energy + Delta-G solvation = -31867.513911 eV Core-core repulsion = 27764.091762 eV Total energy + Delta-G solvation = -4103.422149 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.87778 -39.43749 -38.38125 -37.50709 -36.95047 -35.83824 -34.34278 -32.97430 -31.71887 -30.93837 -30.41190 -28.29134 -27.73950 -26.72769 -25.36637 -23.66691 -23.07598 -20.88787 -20.26931 -19.89792 -19.28350 -18.72261 -18.25818 -17.51547 -16.99971 -16.68098 -16.60228 -16.15056 -15.96247 -15.70866 -15.55494 -15.08863 -14.89424 -14.49651 -14.46913 -14.25496 -14.18905 -13.97861 -13.85931 -13.56138 -13.39919 -13.18153 -13.00380 -12.96864 -12.84465 -12.83415 -12.68128 -12.54497 -12.47306 -12.40385 -12.23451 -12.16549 -11.99148 -11.91751 -11.87587 -11.58276 -11.16788 -10.94507 -10.89123 -10.25442 -9.61645 -8.92048 -7.89313 -5.14896 -0.71902 1.30919 1.48500 1.50083 1.55445 1.81046 1.93960 2.59342 2.85605 3.16980 3.27017 3.44590 3.66131 3.81004 3.88808 3.91173 4.02283 4.06143 4.09799 4.12200 4.22894 4.32925 4.39721 4.52464 4.62274 4.63139 4.69881 4.74078 4.80856 4.84597 4.94056 4.98724 5.01681 5.04994 5.13476 5.18171 5.24529 5.28896 5.33283 5.37976 5.47374 5.58307 5.62189 5.77825 6.32888 6.41020 7.05000 7.40666 8.16680 8.40805 9.33676 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011671 B = 0.004347 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.533409 B = 6439.608013 C = 7993.054526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.097 4.097 3 H 0.087 0.913 4 C 0.120 3.880 5 N -0.592 5.592 6 C 0.518 3.482 7 O -0.567 6.567 8 C 0.167 3.833 9 C -0.180 4.180 10 C -0.166 4.166 11 N -1.116 6.116 12 S 2.601 3.399 13 C -0.655 4.655 14 O -1.002 7.002 15 O -0.977 6.977 16 C 0.103 3.897 17 C -0.147 4.147 18 C 0.172 3.828 19 H 0.046 0.954 20 N -0.723 5.723 21 C -0.230 4.230 22 H 0.072 0.928 23 C -0.070 4.070 24 N -0.967 5.967 25 Si 0.962 3.038 26 H -0.283 1.283 27 H -0.300 1.300 28 H -0.280 1.280 29 H 0.039 0.961 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.105 0.895 39 H 0.082 0.918 40 H 0.421 0.579 41 H 0.155 0.845 42 H 0.153 0.847 43 H 0.160 0.840 44 H 0.114 0.886 45 H 0.050 0.950 46 H 0.075 0.925 47 H 0.058 0.942 48 H 0.374 0.626 49 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.954 12.082 10.915 23.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.117 4.117 3 H 0.105 0.895 4 C -0.002 4.002 5 N -0.322 5.322 6 C 0.305 3.695 7 O -0.446 6.446 8 C 0.075 3.925 9 C -0.238 4.238 10 C -0.225 4.225 11 N -0.875 5.875 12 S 2.698 3.302 13 C -0.809 4.809 14 O -0.992 6.992 15 O -0.967 6.967 16 C -0.020 4.020 17 C -0.188 4.188 18 C 0.063 3.937 19 H 0.064 0.936 20 N -0.364 5.364 21 C -0.362 4.362 22 H 0.090 0.910 23 C -0.263 4.263 24 N -0.618 5.618 25 Si 0.792 3.208 26 H -0.210 1.210 27 H -0.226 1.226 28 H -0.207 1.207 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.120 0.880 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.123 0.877 39 H 0.101 0.899 40 H 0.257 0.743 41 H 0.174 0.826 42 H 0.171 0.829 43 H 0.178 0.822 44 H 0.131 0.869 45 H 0.068 0.932 46 H 0.093 0.907 47 H 0.077 0.923 48 H 0.208 0.792 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 16.946 12.186 10.299 23.275 hybrid contribution -0.959 -1.490 -0.291 1.796 sum 15.987 10.696 10.008 21.683 Atomic orbital electron populations 1.21593 0.93992 1.01473 1.01783 1.21690 0.96617 0.99270 0.94124 0.89512 1.21652 0.79315 1.00294 0.98975 1.48115 1.06734 1.59190 1.18183 1.20866 0.89434 0.77865 0.81309 1.90660 1.75521 1.43714 1.34668 1.20495 0.91387 0.82944 0.97659 1.22709 1.03109 0.98575 0.99368 1.22518 1.02831 1.04827 0.92288 1.55974 1.32869 1.18610 1.80078 1.05012 0.75131 0.72783 0.77273 1.30597 1.16813 1.14584 1.18877 1.93597 1.86160 1.34716 1.84754 1.93633 1.85822 1.62071 1.55153 1.22163 0.99583 0.96753 0.83493 1.22452 0.98727 1.00195 0.97388 1.20442 0.91933 0.85301 0.95993 0.93639 1.42539 1.79096 1.09210 1.05546 1.19515 1.34944 0.94018 0.87695 0.91001 1.25351 1.03515 0.98312 0.99105 1.69783 1.53776 1.12841 1.25410 0.85385 0.77715 0.77537 0.80155 1.20968 1.22638 1.20675 0.94197 0.91477 0.92375 0.92966 0.89234 0.89012 0.87987 0.91110 0.91023 0.87654 0.89867 0.74300 0.82648 0.82851 0.82154 0.86882 0.93168 0.90678 0.92318 0.79189 0.94347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.12 9.05 71.98 0.65 -3.46 16 2 C -0.10 -3.10 2.68 -10.57 -0.03 -3.13 16 3 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 4 C 0.12 3.98 5.45 86.51 0.47 4.45 16 5 N -0.59 -18.14 2.94 -818.08 -2.40 -20.55 16 6 C 0.52 14.38 6.50 87.66 0.57 14.95 16 7 O -0.57 -18.28 15.28 -3.00 -0.05 -18.33 16 8 C 0.17 3.23 0.73 2.86 0.00 3.24 16 9 C -0.18 -3.13 6.85 71.98 0.49 -2.64 16 10 C -0.17 -2.20 7.92 71.98 0.57 -1.63 16 11 N -1.12 -22.40 3.09 -155.18 -0.48 -22.88 16 12 S 2.60 48.71 5.45 -56.49 -0.31 48.40 16 13 C -0.65 -3.95 9.12 113.37 1.03 -2.92 16 14 O -1.00 -28.77 18.08 -127.65 -2.31 -31.08 16 15 O -0.98 -22.94 13.97 -127.65 -1.78 -24.73 16 16 C 0.10 3.37 4.22 86.36 0.36 3.74 16 17 C -0.15 -5.02 5.78 30.68 0.18 -4.84 16 18 C 0.17 6.49 2.53 45.02 0.11 6.60 16 19 H 0.05 1.77 8.08 -2.38 -0.02 1.75 16 20 N -0.72 -34.25 3.64 -322.80 -1.17 -35.43 16 21 C -0.23 -12.33 9.93 84.03 0.83 -11.50 16 22 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 23 C -0.07 -3.98 5.50 84.86 0.47 -3.52 16 24 N -0.97 -58.30 13.06 21.65 0.28 -58.02 16 25 Si 0.96 46.41 29.55 68.60 2.03 48.43 16 26 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 27 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 28 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 29 H 0.04 1.51 7.54 -2.39 -0.02 1.49 16 30 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.05 1.99 6.63 -2.39 -0.02 1.97 16 33 H 0.09 2.87 7.00 -2.38 -0.02 2.86 16 34 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 35 H 0.10 1.29 5.28 -2.39 -0.01 1.27 16 36 H 0.07 1.55 6.09 -2.39 -0.01 1.54 16 37 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.11 0.55 4.71 -2.39 -0.01 0.54 16 39 H 0.08 1.23 7.61 -2.39 -0.02 1.21 16 40 H 0.42 9.66 7.62 -96.76 -0.74 8.92 16 41 H 0.16 0.45 8.12 -2.39 -0.02 0.43 16 42 H 0.15 0.42 8.14 -2.39 -0.02 0.40 16 43 H 0.16 0.21 5.58 -2.39 -0.01 0.19 16 44 H 0.11 3.24 2.80 -2.39 -0.01 3.24 16 45 H 0.05 1.99 7.74 -2.39 -0.02 1.97 16 46 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 47 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 48 H 0.37 19.17 5.92 -92.71 -0.55 18.62 16 49 H 0.25 14.73 8.31 -92.70 -0.77 13.96 16 Total: -1.00 -76.42 374.65 -0.77 -77.19 By element: Atomic # 1 Polarization: 37.95 SS G_CDS: -0.30 Total: 37.65 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: 5.72 Total: -0.67 kcal Atomic # 7 Polarization: -133.10 SS G_CDS: -3.78 Total: -136.88 kcal Atomic # 8 Polarization: -69.99 SS G_CDS: -4.14 Total: -74.13 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.43 kcal Atomic # 16 Polarization: 48.71 SS G_CDS: -0.31 Total: 48.40 kcal Total: -76.42 -0.77 -77.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482434876.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.348 kcal (2) G-P(sol) polarization free energy of solvation -76.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds