Wall clock time and date at job start Wed Apr 1 2020 05:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.46891 * 2 1 4 4 N 1.46502 * 109.47458 * 239.99968 * 2 1 3 5 5 S 1.65599 * 119.99898 * 95.00040 * 4 2 1 6 6 C 1.81398 * 104.45210 * 65.00338 * 5 4 2 7 7 O 1.42107 * 104.27641 * 181.07000 * 5 4 2 8 8 O 1.42101 * 104.27837 * 308.92871 * 5 4 2 9 9 C 1.50705 * 109.47199 * 119.99727 * 2 1 3 10 10 O 1.21281 * 119.99858 * 112.35830 * 9 2 1 11 11 N 1.34770 * 120.00107 * 292.36389 * 9 2 1 12 12 C 1.46928 * 120.62954 * 5.80623 * 11 9 2 13 13 C 1.53200 * 108.77461 * 233.63074 * 12 11 9 14 14 C 1.53034 * 109.31099 * 305.36748 * 13 12 11 15 15 C 1.53041 * 109.54265 * 61.36572 * 14 13 12 16 16 C 1.46925 * 120.63001 * 185.83130 * 11 9 2 17 17 H 1.09000 * 109.58446 * 246.15256 * 16 11 9 18 18 C 1.52990 * 109.58837 * 6.43599 * 16 11 9 19 19 C 1.52998 * 109.47539 * 178.20959 * 18 16 11 20 20 N 1.46500 * 109.47465 * 184.60880 * 19 18 16 21 21 C 1.36938 * 119.99599 * 180.02562 * 20 19 18 22 22 H 1.07993 * 120.00805 * 359.97438 * 21 20 19 23 23 C 1.38818 * 119.99520 * 180.02562 * 21 20 19 24 24 N 1.31617 * 120.00018 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99826 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47075 * 59.99814 * 25 23 21 27 27 H 1.48502 * 109.46835 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47040 * 299.99615 * 25 23 21 29 29 H 1.08995 * 109.47340 * 294.28535 * 1 2 3 30 30 H 1.09000 * 109.46994 * 54.28735 * 1 2 3 31 31 H 1.09001 * 109.47416 * 174.28293 * 1 2 3 32 32 H 0.97005 * 119.99889 * 275.00152 * 4 2 1 33 33 H 1.08999 * 109.47492 * 59.99346 * 6 5 4 34 34 H 1.08995 * 109.47162 * 180.02562 * 6 5 4 35 35 H 1.09002 * 109.46899 * 300.00130 * 6 5 4 36 36 H 1.09001 * 109.58927 * 353.41646 * 12 11 9 37 37 H 1.08996 * 109.58720 * 113.84773 * 12 11 9 38 38 H 1.09005 * 109.49618 * 65.31827 * 13 12 11 39 39 H 1.08993 * 109.49604 * 185.40982 * 13 12 11 40 40 H 1.09002 * 109.45510 * 181.38337 * 14 13 12 41 41 H 1.08997 * 109.46338 * 301.33860 * 14 13 12 42 42 H 1.08994 * 109.50057 * 178.68007 * 15 14 13 43 43 H 1.09004 * 109.49781 * 58.58271 * 15 14 13 44 44 H 1.08998 * 109.47372 * 298.20826 * 18 16 11 45 45 H 1.09007 * 109.47404 * 58.21124 * 18 16 11 46 46 H 1.09011 * 109.47080 * 304.60994 * 19 18 16 47 47 H 1.09000 * 109.47100 * 64.60585 * 19 18 16 48 48 H 0.96991 * 119.99912 * 0.02562 * 20 19 18 49 49 H 0.97000 * 120.00050 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 16 2.4122 0.1772 -2.5504 6 6 3.8314 1.1872 -2.0440 7 8 2.8124 -0.8076 -3.4936 8 8 1.2752 0.9966 -2.7846 9 6 2.0323 -0.7104 1.2305 10 8 2.6111 -1.7709 1.1246 11 7 1.8383 -0.1672 2.4486 12 6 1.0302 1.0498 2.6054 13 6 1.8530 2.0930 3.3682 14 6 2.3404 1.4878 4.6866 15 6 3.2382 0.2830 4.3959 16 6 2.4311 -0.7807 3.6448 17 1 1.6399 -1.1622 4.2901 18 6 3.3525 -1.9292 3.2292 19 6 4.0029 -2.5371 4.4734 20 7 4.9675 -3.5628 4.0686 21 6 5.6765 -4.2487 5.0184 22 1 5.5249 -4.0334 6.0657 23 6 6.5909 -5.2201 4.6348 24 7 6.7760 -5.4822 3.3583 25 14 7.5576 -6.1564 5.9303 26 1 6.6171 -6.8811 6.8221 27 1 8.4599 -7.1311 5.2663 28 1 8.3639 -5.2016 6.7324 29 1 -0.3634 0.4226 0.9367 30 1 -0.3633 0.5999 -0.8344 31 1 -0.3634 -1.0225 -0.1024 32 1 2.1110 -1.6562 -1.1948 33 1 4.6459 0.5363 -1.7266 34 1 4.1605 1.7985 -2.8843 35 1 3.5400 1.8342 -1.2166 36 1 0.7643 1.4410 1.6234 37 1 0.1248 0.8176 3.1660 38 1 2.7110 2.3912 2.7656 39 1 1.2328 2.9650 3.5753 40 1 2.9055 2.2360 5.2425 41 1 1.4828 1.1674 5.2781 42 1 3.6038 -0.1332 5.3345 43 1 4.0831 0.5982 3.7836 44 1 2.7708 -2.6931 2.7133 45 1 4.1273 -1.5505 2.5625 46 1 4.5168 -1.7557 5.0334 47 1 3.2346 -2.9885 5.1013 48 1 5.1039 -3.7559 3.1280 49 1 7.4147 -6.1613 3.0903 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482454285.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:46 Heat of formation + Delta-G solvation = -109.657795 kcal Electronic energy + Delta-G solvation = -30254.047326 eV Core-core repulsion = 26150.056284 eV Total energy + Delta-G solvation = -4103.991042 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.79942 -38.74152 -38.19185 -37.18024 -37.02537 -36.44755 -34.45915 -33.86454 -32.43025 -30.66600 -30.30486 -29.28470 -26.84240 -25.53798 -24.82719 -23.80501 -22.16507 -21.70355 -20.59930 -20.18637 -19.24968 -18.78777 -17.83747 -17.34867 -17.21234 -16.89549 -16.57359 -16.35806 -15.81528 -15.70082 -15.46567 -15.26813 -14.94629 -14.77380 -14.54997 -14.33402 -14.11319 -14.00660 -13.98597 -13.79365 -13.45693 -13.31622 -13.21048 -13.10622 -12.98261 -12.82873 -12.79616 -12.58767 -12.42497 -12.23782 -12.15948 -12.05152 -11.87983 -11.83490 -11.71661 -11.47291 -11.32240 -10.92205 -10.73295 -9.92070 -9.53127 -9.00827 -7.95402 -5.25805 -0.71475 1.44453 1.49287 1.53235 1.55576 1.62394 2.02096 2.55155 2.84235 3.22383 3.32010 3.37121 3.68122 3.81636 3.88299 3.97137 4.00491 4.05162 4.13488 4.14660 4.17266 4.29766 4.34259 4.46161 4.51240 4.60816 4.73198 4.75217 4.82585 4.89140 4.89703 4.95184 4.98101 5.03766 5.16912 5.22350 5.27466 5.33272 5.39948 5.43887 5.50589 5.54607 5.73220 5.89552 6.25688 6.46438 7.20443 7.30649 8.08479 8.31944 9.28440 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010646 B = 0.003066 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2629.370612 B = 9129.682247 C =11072.671940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.133 3.867 3 H 0.140 0.860 4 N -1.109 6.109 5 S 2.627 3.373 6 C -0.661 4.661 7 O -1.002 7.002 8 O -0.977 6.977 9 C 0.498 3.502 10 O -0.557 6.557 11 N -0.602 5.602 12 C 0.086 3.914 13 C -0.133 4.133 14 C -0.116 4.116 15 C -0.130 4.130 16 C 0.158 3.842 17 H 0.080 0.920 18 C -0.096 4.096 19 C 0.146 3.854 20 N -0.748 5.748 21 C -0.250 4.250 22 H 0.078 0.922 23 C -0.079 4.079 24 N -0.973 5.973 25 Si 0.980 3.020 26 H -0.276 1.276 27 H -0.295 1.295 28 H -0.274 1.274 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.422 0.578 33 H 0.133 0.867 34 H 0.152 0.848 35 H 0.153 0.847 36 H 0.117 0.883 37 H 0.092 0.908 38 H 0.065 0.935 39 H 0.105 0.895 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.053 0.947 44 H 0.065 0.935 45 H 0.044 0.956 46 H 0.027 0.973 47 H 0.014 0.986 48 H 0.370 0.630 49 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.692 25.173 -4.969 30.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.022 3.978 3 H 0.158 0.842 4 N -0.867 5.867 5 S 2.722 3.278 6 C -0.814 4.814 7 O -0.993 6.993 8 O -0.967 6.967 9 C 0.285 3.715 10 O -0.435 6.435 11 N -0.335 5.335 12 C -0.034 4.034 13 C -0.171 4.171 14 C -0.154 4.154 15 C -0.168 4.168 16 C 0.054 3.946 17 H 0.098 0.902 18 C -0.134 4.134 19 C 0.019 3.981 20 N -0.390 5.390 21 C -0.382 4.382 22 H 0.096 0.904 23 C -0.271 4.271 24 N -0.623 5.623 25 Si 0.808 3.192 26 H -0.202 1.202 27 H -0.221 1.221 28 H -0.200 1.200 29 H 0.121 0.879 30 H 0.108 0.892 31 H 0.074 0.926 32 H 0.257 0.743 33 H 0.152 0.848 34 H 0.170 0.830 35 H 0.171 0.829 36 H 0.135 0.865 37 H 0.110 0.890 38 H 0.084 0.916 39 H 0.124 0.876 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.063 0.937 46 H 0.045 0.955 47 H 0.032 0.968 48 H 0.201 0.799 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -15.835 24.730 -5.684 29.910 hybrid contribution 1.543 -1.542 0.614 2.266 sum -14.292 23.188 -5.071 27.706 Atomic orbital electron populations 1.22518 0.91277 1.03957 1.05581 1.20875 0.97312 0.96913 0.82722 0.84238 1.55524 1.82130 1.20467 1.28621 1.04249 0.76768 0.74407 0.72386 1.30412 1.19718 1.16509 1.14809 1.93583 1.85164 1.59711 1.60813 1.93576 1.48174 1.70786 1.84122 1.21245 0.79120 0.85680 0.85490 1.90857 1.43143 1.23427 1.86121 1.48209 1.51452 1.28473 1.05368 1.22450 0.94056 0.83255 1.03680 1.21972 1.00745 0.98367 0.96022 1.21529 0.99444 0.96268 0.98156 1.22010 0.98421 0.96252 1.00143 1.21109 0.95002 0.92341 0.86102 0.90202 1.21949 0.98209 0.97814 0.95423 1.21015 0.90820 0.90278 0.95944 1.42620 1.46953 1.43681 1.05790 1.19668 1.15212 1.13565 0.89737 0.90422 1.25685 1.01861 1.01352 0.98221 1.69860 1.39802 1.36654 1.16020 0.85127 0.78158 0.78049 0.77907 1.20208 1.22085 1.19976 0.87909 0.89199 0.92551 0.74266 0.84814 0.82989 0.82872 0.86534 0.89027 0.91574 0.87633 0.90787 0.90798 0.91163 0.92816 0.91616 0.93720 0.95488 0.96807 0.79923 0.94017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 9.03 71.98 0.65 -1.51 16 2 C 0.13 2.03 2.25 44.24 0.10 2.13 16 3 H 0.14 0.97 6.58 -2.39 -0.02 0.96 16 4 N -1.11 -20.84 5.20 -172.52 -0.90 -21.74 16 5 S 2.63 44.97 6.02 -56.49 -0.34 44.63 16 6 C -0.66 -6.06 10.78 113.37 1.22 -4.84 16 7 O -1.00 -27.02 18.08 -127.65 -2.31 -29.33 16 8 O -0.98 -19.72 17.22 -127.65 -2.20 -21.92 16 9 C 0.50 11.50 6.94 87.66 0.61 12.11 16 10 O -0.56 -19.01 11.52 -3.03 -0.03 -19.05 16 11 N -0.60 -11.33 2.97 -795.03 -2.36 -13.69 16 12 C 0.09 0.74 5.07 86.36 0.44 1.18 16 13 C -0.13 -1.01 6.08 30.67 0.19 -0.82 16 14 C -0.12 -1.42 5.88 30.62 0.18 -1.24 16 15 C -0.13 -2.71 4.82 30.67 0.15 -2.56 16 16 C 0.16 3.90 3.02 44.97 0.14 4.03 16 17 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 18 C -0.10 -3.52 3.29 30.59 0.10 -3.42 16 19 C 0.15 6.31 6.01 86.38 0.52 6.83 16 20 N -0.75 -41.86 5.60 -343.44 -1.92 -43.78 16 21 C -0.25 -14.86 9.99 84.03 0.84 -14.02 16 22 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 23 C -0.08 -4.80 5.50 84.86 0.47 -4.33 16 24 N -0.97 -63.18 13.06 21.65 0.28 -62.90 16 25 Si 0.98 47.82 29.55 68.60 2.03 49.85 16 26 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 27 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 28 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 29 H 0.10 0.71 5.32 -2.39 -0.01 0.70 16 30 H 0.09 1.08 7.54 -2.39 -0.02 1.06 16 31 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.42 9.59 8.09 -96.74 -0.78 8.80 16 33 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.15 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.15 0.59 7.44 -2.39 -0.02 0.57 16 36 H 0.12 0.42 4.51 -2.39 -0.01 0.41 16 37 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 39 H 0.11 0.26 8.14 -2.39 -0.02 0.25 16 40 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.07 1.64 6.65 -2.39 -0.02 1.62 16 43 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.07 2.78 6.24 -2.39 -0.01 2.77 16 45 H 0.04 1.83 7.24 -2.38 -0.02 1.81 16 46 H 0.03 1.12 6.31 -2.38 -0.02 1.10 16 47 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 48 H 0.37 22.54 7.67 -92.72 -0.71 21.83 16 49 H 0.25 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -89.06 388.50 -2.68 -91.74 By element: Atomic # 1 Polarization: 33.17 SS G_CDS: -0.52 Total: 32.65 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: 5.59 Total: -6.46 kcal Atomic # 7 Polarization: -137.21 SS G_CDS: -4.90 Total: -142.11 kcal Atomic # 8 Polarization: -65.75 SS G_CDS: -4.54 Total: -70.30 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 2.03 Total: 49.85 kcal Atomic # 16 Polarization: 44.97 SS G_CDS: -0.34 Total: 44.63 kcal Total: -89.06 -2.68 -91.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482454285.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.918 kcal (2) G-P(sol) polarization free energy of solvation -89.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds