Wall clock time and date at job start Wed Apr 1 2020 05:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.99444 * 2 1 4 4 C 1.54328 * 109.88263 * 238.91004 * 2 1 3 5 5 H 1.09005 * 110.71794 * 336.92687 * 4 2 1 6 6 N 1.46497 * 110.72291 * 100.02202 * 4 2 1 7 7 C 1.34776 * 119.99892 * 202.55895 * 6 4 2 8 8 O 1.21282 * 120.00314 * 0.02562 * 7 6 4 9 9 C 1.50704 * 120.00092 * 179.97438 * 7 6 4 10 10 C 1.52995 * 109.47492 * 180.02562 * 9 7 6 11 11 C 1.52996 * 109.47463 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47463 * 179.97438 * 11 10 9 13 13 C 1.52996 * 109.47464 * 179.97438 * 12 11 10 14 14 S 1.81393 * 109.47462 * 180.02562 * 13 12 11 15 15 N 1.65597 * 104.45128 * 179.97438 * 14 13 12 16 16 O 1.42102 * 110.54358 * 68.37417 * 14 13 12 17 17 O 1.42100 * 110.54290 * 291.62543 * 14 13 12 18 18 C 1.55160 * 103.10106 * 218.47689 * 4 2 1 19 19 C 1.54906 * 101.57971 * 35.40768 * 18 4 2 20 20 N 1.47318 * 110.06663 * 121.17558 * 2 1 3 21 21 C 1.36941 * 125.61230 * 298.32186 * 20 2 1 22 22 H 1.08000 * 119.99789 * 359.79884 * 21 20 2 23 23 C 1.38809 * 119.99799 * 179.79892 * 21 20 2 24 24 N 1.31615 * 119.99938 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99801 * 179.97438 * 23 21 20 26 26 H 1.48492 * 109.47219 * 90.00133 * 25 23 21 27 27 H 1.48509 * 109.47057 * 210.00170 * 25 23 21 28 28 H 1.48499 * 109.47153 * 329.99860 * 25 23 21 29 29 H 1.09000 * 109.46763 * 181.09381 * 1 2 3 30 30 H 1.08996 * 109.47057 * 301.08978 * 1 2 3 31 31 H 1.08996 * 109.47728 * 61.09806 * 1 2 3 32 32 H 0.96998 * 119.99959 * 22.55838 * 6 4 2 33 33 H 1.09002 * 109.46593 * 59.99970 * 9 7 6 34 34 H 1.09000 * 109.46989 * 300.00789 * 9 7 6 35 35 H 1.08995 * 109.47017 * 59.99705 * 10 9 7 36 36 H 1.09009 * 109.47046 * 300.00424 * 10 9 7 37 37 H 1.09002 * 109.47097 * 59.99625 * 11 10 9 38 38 H 1.09009 * 109.46847 * 299.99947 * 11 10 9 39 39 H 1.09004 * 109.46865 * 59.99380 * 12 11 10 40 40 H 1.09001 * 109.47197 * 300.00107 * 12 11 10 41 41 H 1.09002 * 109.46772 * 59.99823 * 13 12 11 42 42 H 1.09001 * 109.47325 * 300.00426 * 13 12 11 43 43 H 0.97001 * 120.00224 * 0.02562 * 15 14 13 44 44 H 0.97005 * 120.00050 * 179.72325 * 15 14 13 45 45 H 1.08992 * 111.00734 * 153.48478 * 18 4 2 46 46 H 1.09001 * 111.00028 * 277.34060 * 18 4 2 47 47 H 1.09007 * 110.36585 * 81.83646 * 19 18 4 48 48 H 1.09004 * 110.36507 * 204.04286 * 19 18 4 49 49 H 0.97001 * 119.99868 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7494 -1.2428 5 1 1.3039 -1.4436 -1.6202 6 7 2.4554 0.1962 -2.2876 7 6 2.5054 -0.2024 -3.5741 8 8 2.2184 -1.3438 -3.8669 9 6 2.9169 0.7705 -4.6489 10 6 2.8900 0.0697 -6.0087 11 6 3.3083 1.0572 -7.0998 12 6 3.2820 0.3563 -8.4595 13 6 3.6998 1.3440 -9.5507 14 16 3.6679 0.5131 -11.1629 15 7 4.1343 1.6818 -12.2394 16 8 2.3326 0.2043 -11.5384 17 8 4.6954 -0.4653 -11.2400 18 6 3.2870 -1.5176 -0.6960 19 6 2.8162 -1.8830 0.7339 20 7 2.0355 -0.7163 1.1839 21 6 1.8130 -0.3594 2.4871 22 1 1.2243 0.5173 2.7139 23 6 2.3440 -1.1243 3.5166 24 7 3.0617 -2.1923 3.2401 25 14 2.0411 -0.6369 5.2943 26 1 0.8003 -1.2907 5.7822 27 1 3.1902 -1.0704 6.1291 28 1 1.8920 0.8378 5.3847 29 1 -0.3633 -1.0275 0.0196 30 1 -0.3633 0.5306 0.8800 31 1 -0.3634 0.4966 -0.8996 32 1 2.6846 1.1092 -2.0534 33 1 3.9252 1.1314 -4.4456 34 1 2.2251 1.6127 -4.6608 35 1 1.8816 -0.2909 -6.2117 36 1 3.5816 -0.7728 -5.9970 37 1 4.3168 1.4175 -6.8966 38 1 2.6170 1.9000 -7.1116 39 1 2.2737 -0.0043 -8.6629 40 1 3.9736 -0.4862 -8.4474 41 1 4.7080 1.7049 -9.3474 42 1 3.0080 2.1862 -9.5627 43 1 4.3475 2.5741 -11.9244 44 1 4.1985 1.4729 -13.1845 45 1 3.4812 -2.4143 -1.2844 46 1 4.1664 -0.8743 -0.6652 47 1 2.1882 -2.7736 0.7105 48 1 3.6744 -2.0420 1.3868 49 1 3.4331 -2.7266 3.9595 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489317127.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:39 Heat of formation + Delta-G solvation = -139.671919 kcal Electronic energy + Delta-G solvation = -27802.227671 eV Core-core repulsion = 23696.935119 eV Total energy + Delta-G solvation = -4105.292552 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.97573 -39.21864 -38.02587 -37.06597 -36.90518 -35.54698 -33.97895 -33.90894 -33.29042 -32.05209 -30.55808 -28.62290 -26.38880 -25.80490 -23.97075 -22.25186 -21.92416 -21.51893 -20.93553 -20.30308 -18.71428 -18.47331 -18.15484 -17.86313 -17.31804 -17.26885 -16.72849 -16.58194 -16.22262 -15.88876 -15.72543 -15.46157 -14.88013 -14.58352 -14.34749 -14.29574 -14.00761 -13.71793 -13.39791 -13.23663 -13.19161 -13.11671 -13.03621 -12.98144 -12.91630 -12.75666 -12.65431 -12.54552 -12.21770 -12.08430 -12.02699 -11.99100 -11.95728 -11.57608 -11.44974 -11.39522 -11.39457 -11.22422 -10.77152 -10.71492 -9.95642 -8.90013 -7.74505 -5.19697 -0.67322 1.48522 1.50216 1.58607 1.75013 2.02666 2.23577 2.53449 2.76257 3.36094 3.47231 3.52694 3.59874 3.87075 3.89497 3.94369 3.96693 3.99257 4.21784 4.23631 4.41534 4.49764 4.56856 4.60262 4.63119 4.70612 4.77244 4.80468 4.88517 4.94316 4.95824 5.00588 5.06105 5.14819 5.17594 5.32566 5.37951 5.40290 5.50083 5.52463 5.59414 5.67764 5.79949 6.30346 6.41567 6.67794 7.11219 7.38010 7.79084 8.42928 9.27433 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.040483 B = 0.001408 C = 0.001395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.475784 B =19875.946569 C =20062.376399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.150 3.850 3 H 0.056 0.944 4 C 0.151 3.849 5 H 0.073 0.927 6 N -0.707 5.707 7 C 0.503 3.497 8 O -0.592 6.592 9 C -0.129 4.129 10 C -0.112 4.112 11 C -0.102 4.102 12 C -0.131 4.131 13 C -0.591 4.591 14 S 2.613 3.387 15 N -1.240 6.240 16 O -1.014 7.014 17 O -1.015 7.015 18 C -0.138 4.138 19 C 0.157 3.843 20 N -0.614 5.614 21 C -0.227 4.227 22 H 0.087 0.913 23 C -0.070 4.070 24 N -0.952 5.952 25 Si 0.979 3.021 26 H -0.291 1.291 27 H -0.296 1.296 28 H -0.265 1.265 29 H 0.032 0.968 30 H 0.048 0.952 31 H 0.072 0.928 32 H 0.415 0.585 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.169 0.831 42 H 0.170 0.830 43 H 0.428 0.572 44 H 0.423 0.577 45 H 0.060 0.940 46 H 0.071 0.929 47 H -0.019 1.019 48 H 0.077 0.923 49 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.456 17.241 -28.701 33.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.044 3.956 3 H 0.074 0.926 4 C 0.045 3.955 5 H 0.091 0.909 6 N -0.359 5.359 7 C 0.292 3.708 8 O -0.473 6.473 9 C -0.168 4.168 10 C -0.151 4.151 11 C -0.141 4.141 12 C -0.171 4.171 13 C -0.725 4.725 14 S 2.710 3.290 15 N -0.917 5.917 16 O -1.003 7.003 17 O -1.004 7.004 18 C -0.178 4.178 19 C 0.032 3.968 20 N -0.339 5.339 21 C -0.356 4.356 22 H 0.104 0.896 23 C -0.262 4.262 24 N -0.602 5.602 25 Si 0.808 3.192 26 H -0.218 1.218 27 H -0.223 1.223 28 H -0.190 1.190 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.252 0.748 33 H 0.138 0.862 34 H 0.142 0.858 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.187 0.813 42 H 0.187 0.813 43 H 0.258 0.742 44 H 0.253 0.747 45 H 0.079 0.921 46 H 0.090 0.910 47 H -0.001 1.001 48 H 0.095 0.905 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.011 15.331 -28.850 32.809 hybrid contribution 0.048 0.385 1.462 1.513 sum 3.058 15.716 -27.388 31.724 Atomic orbital electron populations 1.22118 0.96632 1.00552 1.01277 1.21274 0.93407 0.95187 0.85760 0.92625 1.21656 0.95909 0.91053 0.86916 0.90905 1.45944 1.68774 1.15126 1.06076 1.21651 0.75962 0.89209 0.83938 1.90694 1.50928 1.22706 1.82959 1.21733 1.05676 0.97852 0.91545 1.21387 1.01962 0.98518 0.93184 1.21524 1.03932 0.97925 0.90723 1.21476 1.02825 0.97671 0.95083 1.30166 1.14555 1.12474 1.15260 1.04362 0.72964 0.74213 0.77487 1.52777 1.88754 1.28074 1.22110 1.93568 1.40554 1.83872 1.82336 1.93569 1.59644 1.60356 1.86836 1.23176 0.97907 0.99855 0.96823 1.21656 0.95717 0.87723 0.91748 1.44808 1.59744 1.28472 1.00926 1.19417 1.26417 1.07993 0.81753 0.89566 1.25625 1.00878 0.97722 1.02006 1.70051 1.40455 1.18936 1.30750 0.85065 0.76444 0.78077 0.79659 1.21847 1.22309 1.19004 0.94923 0.93319 0.90924 0.74759 0.86178 0.85803 0.92714 0.92976 0.89327 0.89118 0.90718 0.90847 0.81342 0.81254 0.74185 0.74716 0.92088 0.91005 1.00122 0.90470 0.94498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.15 9.15 71.98 0.66 -4.49 16 2 C 0.15 5.72 3.49 45.29 0.16 5.88 16 3 H 0.06 1.94 7.70 -2.39 -0.02 1.92 16 4 C 0.15 5.28 2.79 46.18 0.13 5.41 16 5 H 0.07 2.86 7.33 -2.38 -0.02 2.84 16 6 N -0.71 -17.77 5.19 -436.90 -2.27 -20.04 16 7 C 0.50 12.68 7.83 87.66 0.69 13.37 16 8 O -0.59 -21.06 15.67 -3.04 -0.05 -21.10 16 9 C -0.13 -1.69 5.70 29.85 0.17 -1.52 16 10 C -0.11 -1.66 4.50 30.59 0.14 -1.53 16 11 C -0.10 -0.71 5.21 30.59 0.16 -0.55 16 12 C -0.13 -1.17 5.22 30.59 0.16 -1.01 16 13 C -0.59 -1.30 6.09 71.98 0.44 -0.87 16 14 S 2.61 27.52 5.97 -56.49 -0.34 27.18 16 15 N -1.24 -3.63 9.43 37.02 0.35 -3.28 16 16 O -1.01 -20.39 18.10 -127.65 -2.31 -22.70 16 17 O -1.01 -20.59 18.10 -127.65 -2.31 -22.91 16 18 C -0.14 -5.48 6.77 31.99 0.22 -5.26 16 19 C 0.16 7.93 5.89 86.86 0.51 8.44 16 20 N -0.61 -30.51 3.14 -667.56 -2.10 -32.61 16 21 C -0.23 -12.24 9.91 84.03 0.83 -11.41 16 22 H 0.09 4.39 7.83 -2.91 -0.02 4.37 16 23 C -0.07 -3.92 5.49 84.86 0.47 -3.45 16 24 N -0.95 -56.72 10.09 21.65 0.22 -56.50 16 25 Si 0.98 45.01 29.55 68.60 2.03 47.04 16 26 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 27 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 28 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 29 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.05 1.75 8.06 -2.39 -0.02 1.73 16 31 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.42 7.60 8.34 -92.71 -0.77 6.83 16 33 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.05 1.01 8.10 -2.39 -0.02 0.99 16 36 H 0.05 0.99 8.10 -2.38 -0.02 0.97 16 37 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 38 H 0.09 0.29 8.14 -2.38 -0.02 0.27 16 39 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.17 -0.60 8.14 -2.39 -0.02 -0.62 16 42 H 0.17 -0.65 8.14 -2.39 -0.02 -0.67 16 43 H 0.43 -1.96 8.83 -96.74 -0.85 -2.81 16 44 H 0.42 1.15 8.96 -96.74 -0.87 0.29 16 45 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 46 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 47 H -0.02 -1.07 8.14 -2.38 -0.02 -1.09 16 48 H 0.08 4.40 5.88 -2.38 -0.01 4.38 16 49 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -89.80 407.89 -3.58 -93.38 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -1.53 Total: 8.54 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: 4.72 Total: 3.00 kcal Atomic # 7 Polarization: -108.64 SS G_CDS: -3.80 Total: -112.43 kcal Atomic # 8 Polarization: -62.04 SS G_CDS: -4.67 Total: -66.71 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Atomic # 16 Polarization: 27.52 SS G_CDS: -0.34 Total: 27.18 kcal Total: -89.80 -3.58 -93.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489317127.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.293 kcal (2) G-P(sol) polarization free energy of solvation -89.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds