Wall clock time and date at job start Wed Apr 1 2020 05:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47511 * 2 1 4 4 N 1.46507 * 109.46878 * 240.00163 * 2 1 3 5 5 C 1.36936 * 119.99717 * 85.00564 * 4 2 1 6 6 H 1.08001 * 120.00466 * 359.97438 * 5 4 2 7 7 C 1.38818 * 119.99706 * 179.97438 * 5 4 2 8 8 N 1.31612 * 119.99951 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 120.00051 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46979 * 90.00100 * 9 7 5 11 11 H 1.48499 * 109.47152 * 210.00030 * 9 7 5 12 12 H 1.48504 * 109.47141 * 330.00454 * 9 7 5 13 13 C 1.52994 * 109.46794 * 120.00456 * 2 1 3 14 14 H 1.08997 * 109.70191 * 306.42100 * 13 2 1 15 15 C 1.53622 * 109.66654 * 67.02121 * 13 2 1 16 16 C 1.53048 * 109.24290 * 174.54781 * 15 13 2 17 17 C 1.53031 * 109.53748 * 298.51156 * 16 15 13 18 18 C 1.53194 * 109.31820 * 61.36351 * 17 16 15 19 19 N 1.46926 * 108.77377 * 305.36544 * 18 17 16 20 20 C 1.34777 * 120.63272 * 233.58195 * 19 18 17 21 21 O 1.21279 * 120.00056 * 175.06021 * 20 19 18 22 22 C 1.50692 * 119.99791 * 355.06681 * 20 19 18 23 23 C 1.53009 * 109.47071 * 179.97438 * 22 20 19 24 24 N 1.46504 * 109.46974 * 180.02562 * 23 22 20 25 25 S 1.65597 * 119.99828 * 165.00457 * 24 23 22 26 26 C 1.81395 * 104.45107 * 64.99263 * 25 24 23 27 27 O 1.42097 * 104.27439 * 181.06658 * 25 24 23 28 28 O 1.42104 * 104.27368 * 308.92366 * 25 24 23 29 29 H 1.08994 * 109.47149 * 304.93848 * 1 2 3 30 30 H 1.09004 * 109.47042 * 64.93359 * 1 2 3 31 31 H 1.08999 * 109.47139 * 184.93493 * 1 2 3 32 32 H 0.96995 * 119.99667 * 264.99888 * 4 2 1 33 33 H 0.96999 * 120.00584 * 179.97438 * 8 7 5 34 34 H 1.08997 * 109.63646 * 54.55937 * 15 13 2 35 35 H 1.09000 * 109.43124 * 294.41422 * 15 13 2 36 36 H 1.08995 * 109.45687 * 178.48726 * 16 15 13 37 37 H 1.09001 * 109.45681 * 58.52743 * 16 15 13 38 38 H 1.09008 * 109.49734 * 301.41270 * 17 16 15 39 39 H 1.09000 * 109.52816 * 181.33717 * 17 16 15 40 40 H 1.09003 * 109.58932 * 185.57958 * 18 17 16 41 41 H 1.09000 * 109.69998 * 65.21956 * 18 17 16 42 42 H 1.09001 * 109.47200 * 299.99775 * 22 20 19 43 43 H 1.08999 * 109.47253 * 59.99841 * 22 20 19 44 44 H 1.09001 * 109.46885 * 299.99570 * 23 22 20 45 45 H 1.08999 * 109.47012 * 59.99938 * 23 22 20 46 46 H 0.97000 * 119.99638 * 344.99627 * 24 23 22 47 47 H 1.09004 * 109.47390 * 60.00378 * 26 25 24 48 48 H 1.08998 * 109.46973 * 179.97438 * 26 25 24 49 49 H 1.08993 * 109.47617 * 300.00193 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1492 -0.0074 -2.3758 6 1 1.8920 1.0404 -2.4243 7 6 2.6123 -0.6616 -3.5091 8 7 2.7376 -0.0051 -4.6429 9 14 3.0578 -2.4738 -3.4250 10 1 1.8611 -3.2930 -3.7443 11 1 4.1334 -2.7652 -4.4065 12 1 3.5329 -2.8038 -2.0572 13 6 2.0399 -0.7213 1.2492 14 1 1.5880 -0.2811 2.1379 15 6 1.6798 -2.2125 1.1683 16 6 2.3103 -2.9487 2.3527 17 6 3.8334 -2.8171 2.2850 18 6 4.2187 -1.3371 2.3750 19 7 3.5020 -0.5973 1.3272 20 6 4.1722 0.1846 0.4578 21 8 3.5817 0.7189 -0.4569 22 6 5.6553 0.3948 0.6222 23 6 6.1660 1.3157 -0.4879 24 7 7.6080 1.5196 -0.3284 25 16 8.4968 2.1555 -1.5725 26 6 7.8570 3.8413 -1.7705 27 8 9.8274 2.1825 -1.0744 28 8 8.1507 1.3558 -2.6950 29 1 -0.3633 0.5885 0.8424 30 1 -0.3633 0.4354 -0.9309 31 1 -0.3633 -1.0238 0.0884 32 1 2.2490 -1.6317 -1.1527 33 1 3.0616 -0.4621 -5.4348 34 1 2.0593 -2.6310 0.2361 35 1 0.5963 -2.3264 1.2042 36 1 2.0347 -4.0025 2.3136 37 1 1.9493 -2.5134 3.2846 38 1 4.1927 -3.2298 1.3422 39 1 4.2835 -3.3613 3.1152 40 1 5.2934 -1.2297 2.2280 41 1 3.9426 -0.9444 3.3536 42 1 5.8522 0.8509 1.5924 43 1 6.1673 -0.5655 0.5615 44 1 5.9691 0.8591 -1.4579 45 1 5.6540 2.2760 -0.4276 46 1 8.0420 1.2821 0.5060 47 1 8.0004 4.3957 -0.8430 48 1 8.3922 4.3405 -2.5782 49 1 6.7942 3.8009 -2.0089 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490296141.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:52 Heat of formation + Delta-G solvation = -85.349765 kcal Electronic energy + Delta-G solvation = -31253.267644 eV Core-core repulsion = 27150.330677 eV Total energy + Delta-G solvation = -4102.936967 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.50884 -38.49499 -38.15594 -37.12995 -37.03712 -36.33910 -34.12331 -33.64033 -31.74793 -30.97805 -30.28421 -29.88578 -26.36448 -25.47721 -24.80852 -23.90622 -21.94691 -21.22289 -20.57534 -19.81557 -19.27241 -18.54087 -17.78315 -17.30940 -17.05984 -16.77533 -16.55624 -16.40218 -15.86245 -15.57738 -15.30636 -15.23769 -14.94023 -14.73216 -14.40223 -14.14906 -14.05543 -13.97921 -13.88241 -13.59449 -13.28596 -13.23572 -13.20928 -13.18232 -13.06716 -12.87146 -12.62162 -12.59526 -12.44021 -12.39882 -11.99474 -11.96752 -11.86189 -11.74181 -11.55046 -11.40595 -11.20827 -10.82118 -10.43476 -9.64514 -9.33963 -8.82996 -7.81603 -5.03803 -0.68255 1.28268 1.33690 1.40674 1.70432 2.04924 2.33088 2.57886 2.85171 3.28201 3.50905 3.64777 3.79276 3.83410 3.99995 4.02373 4.03354 4.12451 4.18091 4.21491 4.27204 4.37989 4.44256 4.51285 4.59390 4.67669 4.77570 4.84894 4.89772 4.93011 4.96564 4.99838 5.02851 5.11434 5.14594 5.16926 5.26453 5.28489 5.48843 5.55230 5.58665 5.97261 6.05146 6.18229 6.40926 6.76422 7.30876 7.69436 8.10314 8.28228 9.43160 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009973 B = 0.004450 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2806.775341 B = 6290.879162 C = 7727.175861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.170 3.830 3 H 0.066 0.934 4 N -0.726 5.726 5 C -0.132 4.132 6 H 0.048 0.952 7 C -0.087 4.087 8 N -0.999 5.999 9 Si 0.936 3.064 10 H -0.286 1.286 11 H -0.312 1.312 12 H -0.264 1.264 13 C 0.149 3.851 14 H 0.099 0.901 15 C -0.135 4.135 16 C -0.111 4.111 17 C -0.137 4.137 18 C 0.106 3.894 19 N -0.615 5.615 20 C 0.477 3.523 21 O -0.505 6.505 22 C -0.135 4.135 23 C 0.131 3.869 24 N -1.107 6.107 25 S 2.622 3.378 26 C -0.654 4.654 27 O -0.990 6.990 28 O -1.012 7.012 29 H 0.070 0.930 30 H 0.025 0.975 31 H 0.052 0.948 32 H 0.355 0.645 33 H 0.244 0.756 34 H 0.032 0.968 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.038 0.962 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.137 0.863 43 H 0.101 0.899 44 H 0.045 0.955 45 H 0.081 0.919 46 H 0.428 0.572 47 H 0.161 0.839 48 H 0.144 0.856 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.821 1.597 24.066 25.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.062 3.938 3 H 0.084 0.916 4 N -0.369 5.369 5 C -0.265 4.265 6 H 0.066 0.934 7 C -0.275 4.275 8 N -0.655 5.655 9 Si 0.768 3.232 10 H -0.213 1.213 11 H -0.240 1.240 12 H -0.190 1.190 13 C 0.045 3.955 14 H 0.117 0.883 15 C -0.173 4.173 16 C -0.149 4.149 17 C -0.175 4.175 18 C -0.016 4.016 19 N -0.351 5.351 20 C 0.263 3.737 21 O -0.379 6.379 22 C -0.176 4.176 23 C 0.004 3.996 24 N -0.869 5.869 25 S 2.717 3.283 26 C -0.807 4.807 27 O -0.980 6.980 28 O -1.003 7.003 29 H 0.089 0.911 30 H 0.044 0.956 31 H 0.071 0.929 32 H 0.189 0.811 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.105 0.895 38 H 0.057 0.943 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.112 0.888 42 H 0.155 0.845 43 H 0.120 0.880 44 H 0.063 0.937 45 H 0.100 0.900 46 H 0.265 0.735 47 H 0.179 0.821 48 H 0.163 0.837 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 7.111 1.636 22.820 23.958 hybrid contribution 0.013 -0.876 -0.795 1.183 sum 7.123 0.761 22.025 23.161 Atomic orbital electron populations 1.22437 0.98371 1.01198 1.00392 1.20773 0.91053 0.97238 0.84699 0.91588 1.42789 1.78764 1.08339 1.06990 1.18727 1.28634 0.93166 0.85937 0.93421 1.25151 1.05665 1.00647 0.96080 1.69841 1.58222 1.36526 1.00954 0.85650 0.77101 0.83753 0.76716 1.21300 1.24028 1.18995 1.21606 0.80178 0.95634 0.98092 0.88297 1.22078 1.01474 0.95156 0.98614 1.21486 0.95145 1.00362 0.97880 1.21947 0.96628 0.96703 1.02227 1.21959 0.97654 0.90948 0.91037 1.48075 1.06776 1.47268 1.32992 1.21038 0.90258 0.80613 0.81767 1.91081 1.68464 1.48486 1.29874 1.21791 0.92104 1.02163 1.01516 1.20896 0.78949 1.00616 0.99134 1.55177 1.17702 1.80876 1.33118 1.04180 0.73009 0.78287 0.72781 1.30324 1.14229 1.22213 1.13975 1.93556 1.36148 1.88389 1.79908 1.93613 1.84675 1.67778 1.54186 0.91110 0.95556 0.92863 0.81112 0.94683 0.94944 0.90143 0.91547 0.89523 0.94346 0.88118 0.88396 0.88780 0.84479 0.88040 0.93667 0.90045 0.73504 0.82119 0.83728 0.85060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.49 9.38 71.98 0.68 -4.81 16 2 C 0.17 6.34 1.88 44.99 0.08 6.42 16 3 H 0.07 2.82 5.90 -6.61 -0.04 2.78 16 4 N -0.73 -34.46 3.43 -322.93 -1.11 -35.57 16 5 C -0.13 -7.87 8.47 84.04 0.71 -7.16 16 6 H 0.05 3.18 8.06 -2.91 -0.02 3.16 16 7 C -0.09 -5.57 5.50 84.86 0.47 -5.10 16 8 N -1.00 -69.48 13.97 21.65 0.30 -69.18 16 9 Si 0.94 50.74 27.74 68.60 1.90 52.65 16 10 H -0.29 -15.04 7.11 99.48 0.71 -14.33 16 11 H -0.31 -17.68 7.11 99.48 0.71 -16.97 16 12 H -0.26 -13.13 6.52 99.48 0.65 -12.49 16 13 C 0.15 3.95 2.73 45.12 0.12 4.07 16 14 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 15 C -0.13 -3.36 4.89 30.82 0.15 -3.21 16 16 C -0.11 -1.87 5.88 30.62 0.18 -1.69 16 17 C -0.14 -2.16 6.08 30.67 0.19 -1.98 16 18 C 0.11 1.56 6.33 86.36 0.55 2.11 16 19 N -0.62 -15.22 2.96 -794.22 -2.35 -17.57 16 20 C 0.48 14.73 7.39 87.65 0.65 15.38 16 21 O -0.51 -21.52 8.72 -3.03 -0.03 -21.55 16 22 C -0.13 -2.90 4.24 29.85 0.13 -2.78 16 23 C 0.13 3.47 5.42 86.38 0.47 3.94 16 24 N -1.11 -22.10 5.89 -187.47 -1.10 -23.20 16 25 S 2.62 62.61 6.10 -56.49 -0.34 62.26 16 26 C -0.65 -10.26 10.89 113.37 1.23 -9.02 16 27 O -0.99 -26.95 18.08 -127.65 -2.31 -29.26 16 28 O -1.01 -37.69 17.50 -127.65 -2.23 -39.93 16 29 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.03 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.05 1.64 6.57 -2.39 -0.02 1.63 16 32 H 0.35 16.80 3.46 -92.71 -0.32 16.47 16 33 H 0.24 16.56 8.31 -92.71 -0.77 15.79 16 34 H 0.03 1.06 6.05 -2.39 -0.01 1.04 16 35 H 0.08 1.86 6.82 -2.39 -0.02 1.85 16 36 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 39 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.10 1.11 5.96 -2.39 -0.01 1.10 16 41 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.14 1.64 8.11 -2.39 -0.02 1.62 16 43 H 0.10 2.01 7.48 -2.39 -0.02 1.99 16 44 H 0.04 1.71 7.65 -2.39 -0.02 1.69 16 45 H 0.08 2.00 8.10 -2.39 -0.02 1.98 16 46 H 0.43 5.72 8.62 -96.74 -0.83 4.89 16 47 H 0.16 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.14 1.86 8.14 -2.39 -0.02 1.84 16 49 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -95.78 384.84 -1.94 -97.72 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: -0.27 Total: 27.45 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: 5.60 Total: -3.83 kcal Atomic # 7 Polarization: -141.26 SS G_CDS: -4.26 Total: -145.52 kcal Atomic # 8 Polarization: -86.17 SS G_CDS: -4.57 Total: -90.74 kcal Atomic # 14 Polarization: 50.74 SS G_CDS: 1.90 Total: 52.65 kcal Atomic # 16 Polarization: 62.61 SS G_CDS: -0.34 Total: 62.26 kcal Total: -95.78 -1.94 -97.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490296141.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.372 kcal (2) G-P(sol) polarization free energy of solvation -95.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds