Wall clock time and date at job start Wed Apr 1 2020 05:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.47533 * 2 1 4 4 C 1.50699 * 109.47092 * 120.00601 * 2 1 3 5 5 O 1.21277 * 120.00622 * 99.99794 * 4 2 1 6 6 N 1.34775 * 119.99838 * 279.99475 * 4 2 1 7 7 C 1.46501 * 120.00273 * 180.02562 * 6 4 2 8 8 C 1.53003 * 109.47026 * 180.02562 * 7 6 4 9 9 C 1.53006 * 109.46899 * 179.97438 * 8 7 6 10 10 N 1.46898 * 109.46965 * 180.02562 * 9 8 7 11 11 C 1.46905 * 110.99932 * 294.30190 * 10 9 8 12 12 C 1.53237 * 109.34038 * 172.75074 * 11 10 9 13 13 N 1.47080 * 108.52380 * 53.82657 * 12 11 10 14 14 C 1.36934 * 120.87897 * 128.83799 * 13 12 11 15 15 H 1.07997 * 120.00471 * 333.48837 * 14 13 12 16 16 C 1.38819 * 119.99535 * 153.49193 * 14 13 12 17 17 N 1.31618 * 119.99491 * 159.44170 * 16 14 13 18 18 Si 1.86792 * 120.00220 * 339.43745 * 16 14 13 19 19 H 1.48503 * 109.46980 * 91.97972 * 18 16 14 20 20 H 1.48506 * 109.47397 * 211.97981 * 18 16 14 21 21 H 1.48503 * 109.47158 * 331.98274 * 18 16 14 22 22 C 1.47076 * 118.23631 * 308.81972 * 13 12 11 23 23 C 1.46903 * 110.99992 * 170.00336 * 10 9 8 24 24 S 1.81399 * 109.46824 * 240.00210 * 2 1 3 25 25 C 1.81398 * 101.92291 * 59.99991 * 24 2 1 26 26 O 1.42096 * 108.57952 * 174.48894 * 24 2 1 27 27 O 1.42107 * 108.57884 * 305.51070 * 24 2 1 28 28 H 1.08993 * 109.46815 * 59.99487 * 1 2 3 29 29 H 1.08998 * 109.46823 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46565 * 300.00097 * 1 2 3 31 31 H 0.97010 * 120.00054 * 0.02562 * 6 4 2 32 32 H 1.09002 * 109.46881 * 300.00069 * 7 6 4 33 33 H 1.08994 * 109.46878 * 60.00008 * 7 6 4 34 34 H 1.09002 * 109.47238 * 299.99717 * 8 7 6 35 35 H 1.08994 * 109.47395 * 60.00190 * 8 7 6 36 36 H 1.09002 * 109.47019 * 299.99942 * 9 8 7 37 37 H 1.09004 * 109.46690 * 60.00016 * 9 8 7 38 38 H 1.09003 * 109.49014 * 292.70884 * 11 10 9 39 39 H 1.08999 * 109.49388 * 52.78928 * 11 10 9 40 40 H 1.09004 * 109.62447 * 294.11727 * 12 11 10 41 41 H 1.08992 * 109.62974 * 173.54063 * 12 11 10 42 42 H 0.97009 * 119.99685 * 179.97438 * 17 16 14 43 43 H 1.08998 * 109.63171 * 291.47170 * 22 13 12 44 44 H 1.09001 * 109.79206 * 170.98662 * 22 13 12 45 45 H 1.09003 * 109.48762 * 307.21511 * 23 10 9 46 46 H 1.09000 * 109.49155 * 67.28823 * 23 10 9 47 47 H 1.08997 * 109.46877 * 60.00333 * 25 24 2 48 48 H 1.09008 * 109.47110 * 179.97438 * 25 24 2 49 49 H 1.08995 * 109.47409 * 299.99647 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.4065 -1.8617 1.1557 6 7 2.0660 -0.0666 2.4139 7 6 2.5548 -0.7571 3.6099 8 6 2.4880 0.1908 4.8091 9 6 2.9980 -0.5305 6.0584 10 7 2.9333 0.3793 7.2098 11 6 3.8622 1.5053 7.0439 12 6 3.6362 2.5198 8.1700 13 7 3.7342 1.8173 9.4584 14 6 4.5487 2.2861 10.4544 15 1 5.4175 2.8783 10.2076 16 6 4.2576 2.0002 11.7812 17 7 5.2023 2.0803 12.6941 18 14 2.5252 1.5020 12.2710 19 1 2.4051 0.0225 12.2286 20 1 2.2424 1.9824 13.6475 21 1 1.5510 2.1050 11.3263 22 6 2.9339 0.5981 9.6489 23 6 3.1876 -0.3408 8.4648 24 16 2.1346 -0.8551 -1.4812 25 6 1.4229 0.1516 -2.8118 26 8 3.5496 -0.7331 -1.5286 27 8 1.5479 -2.1485 -1.5285 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 1.7665 0.8542 2.4738 32 1 1.9341 -1.6318 3.8036 33 1 3.5864 -1.0714 3.4518 34 1 3.1086 1.0659 4.6156 35 1 1.4563 0.5048 4.9671 36 1 2.3771 -1.4053 6.2517 37 1 4.0297 -0.8448 5.9006 38 1 4.8881 1.1394 7.0846 39 1 3.6844 1.9847 6.0813 40 1 2.6457 2.9637 8.0694 41 1 4.3966 3.2989 8.1189 42 1 4.9989 1.8809 13.6214 43 1 1.8760 0.8573 9.6905 44 1 3.2268 0.1054 10.5760 45 1 2.5205 -1.2002 8.5324 46 1 4.2229 -0.6809 8.4855 47 1 1.7894 1.1747 -2.7291 48 1 1.7159 -0.2621 -3.7768 49 1 0.3361 0.1471 -2.7292 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490469275.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:46:53 Heat of formation + Delta-G solvation = -102.508626 kcal Electronic energy + Delta-G solvation = -28525.150235 eV Core-core repulsion = 24421.469204 eV Total energy + Delta-G solvation = -4103.681031 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.09929 -39.96353 -38.07169 -37.28505 -37.01551 -35.97860 -34.71742 -33.76482 -32.28472 -31.82090 -30.24384 -28.69004 -26.45999 -25.39696 -24.90570 -23.85895 -22.42182 -21.84254 -20.98257 -19.78251 -18.86093 -18.64868 -18.19645 -17.41103 -17.18078 -16.88227 -16.77027 -16.52951 -16.14421 -15.97571 -15.76486 -15.60978 -15.44808 -15.02066 -14.79919 -14.40360 -14.14470 -14.05944 -14.00376 -13.94783 -13.65693 -13.28946 -13.18675 -13.12143 -13.06415 -12.98364 -12.90370 -12.71930 -12.52912 -12.28504 -12.19009 -11.98323 -11.90530 -11.63778 -11.60247 -11.52476 -11.39581 -11.18264 -10.72558 -10.28315 -9.38777 -8.90536 -8.17817 -5.49262 -1.07675 1.29673 1.29743 1.41300 1.51149 1.75135 1.86768 2.40968 2.79555 2.92286 3.02722 3.06541 3.35939 3.40769 3.68172 3.90927 3.97417 3.99435 4.11160 4.12416 4.21394 4.23097 4.26858 4.38487 4.48870 4.54848 4.58796 4.60393 4.62501 4.66863 4.72838 4.77852 4.82681 4.97202 4.97908 5.01709 5.13446 5.16947 5.19595 5.30448 5.31159 5.81751 6.06790 6.09317 6.20479 6.27297 6.88974 6.97739 7.60286 8.02688 9.02011 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.034227 B = 0.001657 C = 0.001647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.879388 B =16898.154912 C =16992.415693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.600 4.600 3 H 0.205 0.795 4 C 0.526 3.474 5 O -0.583 6.583 6 N -0.699 5.699 7 C 0.119 3.881 8 C -0.111 4.111 9 C 0.056 3.944 10 N -0.535 5.535 11 C 0.049 3.951 12 C 0.145 3.855 13 N -0.625 5.625 14 C -0.249 4.249 15 H 0.052 0.948 16 C -0.038 4.038 17 N -0.958 5.958 18 Si 0.951 3.049 19 H -0.273 1.273 20 H -0.311 1.311 21 H -0.262 1.262 22 C 0.125 3.875 23 C 0.052 3.948 24 S 2.419 3.581 25 C -0.626 4.626 26 O -0.989 6.989 27 O -0.975 6.975 28 H 0.126 0.874 29 H 0.062 0.938 30 H 0.101 0.899 31 H 0.424 0.576 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.029 0.971 38 H 0.016 0.984 39 H 0.107 0.893 40 H 0.040 0.960 41 H 0.060 0.940 42 H 0.261 0.739 43 H 0.037 0.963 44 H 0.051 0.949 45 H 0.093 0.907 46 H 0.020 0.980 47 H 0.166 0.834 48 H 0.142 0.858 49 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.216 0.287 -33.907 37.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.710 4.710 3 H 0.222 0.778 4 C 0.312 3.688 5 O -0.464 6.464 6 N -0.351 5.351 7 C -0.005 4.005 8 C -0.149 4.149 9 C -0.072 4.072 10 N -0.259 5.259 11 C -0.080 4.080 12 C 0.021 3.979 13 N -0.350 5.350 14 C -0.379 4.379 15 H 0.069 0.931 16 C -0.233 4.233 17 N -0.604 5.604 18 Si 0.780 3.220 19 H -0.200 1.200 20 H -0.240 1.240 21 H -0.186 1.186 22 C 0.000 4.000 23 C -0.078 4.078 24 S 2.604 3.396 25 C -0.780 4.780 26 O -0.986 6.986 27 O -0.972 6.972 28 H 0.145 0.855 29 H 0.081 0.919 30 H 0.119 0.881 31 H 0.262 0.738 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.047 0.953 38 H 0.034 0.966 39 H 0.125 0.875 40 H 0.058 0.942 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.055 0.945 44 H 0.069 0.931 45 H 0.111 0.889 46 H 0.038 0.962 47 H 0.185 0.815 48 H 0.161 0.839 49 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -14.826 -1.091 -33.778 36.905 hybrid contribution 0.290 0.302 1.292 1.359 sum -14.536 -0.789 -32.486 35.598 Atomic orbital electron populations 1.21845 0.85278 1.04895 1.08217 1.30606 1.10619 1.16824 1.12996 0.77758 1.19971 0.77410 0.85972 0.85482 1.90874 1.49986 1.19223 1.86334 1.45723 1.64577 1.17662 1.07161 1.21328 0.99527 0.95930 0.83753 1.21635 1.03927 0.98175 0.91152 1.22045 0.99696 0.95565 0.89915 1.61920 1.52000 1.10267 1.01742 1.22580 0.92937 0.92726 0.99802 1.21209 0.99425 0.93637 0.83676 1.44560 1.51135 1.25791 1.13492 1.18876 1.02652 1.30262 0.86116 0.93072 1.25916 1.00973 1.00712 0.95658 1.69975 1.33571 1.54600 1.02269 0.85863 0.82343 0.77956 0.75886 1.19993 1.23961 1.18631 1.21444 0.94449 0.87369 0.96762 1.22444 0.98997 0.96359 0.89983 1.07791 0.75162 0.77253 0.79400 1.30122 1.15821 1.16465 1.15635 1.93532 1.30656 1.87731 1.86665 1.93529 1.79435 1.38014 1.86203 0.85547 0.91873 0.88063 0.73800 0.91574 0.92427 0.90005 0.89054 0.89846 0.95294 0.96585 0.87462 0.94151 0.92194 0.92966 0.94478 0.93081 0.88855 0.96162 0.81543 0.83943 0.81633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.22 8.93 71.98 0.64 0.42 16 2 C -0.60 -4.20 3.11 29.85 0.09 -4.11 16 3 H 0.21 -0.72 8.14 -2.39 -0.02 -0.74 16 4 C 0.53 9.47 7.00 87.66 0.61 10.08 16 5 O -0.58 -17.45 15.65 5.50 0.09 -17.36 16 6 N -0.70 -8.77 5.56 -463.07 -2.57 -11.34 16 7 C 0.12 1.92 5.67 86.38 0.49 2.41 16 8 C -0.11 -1.60 5.26 30.60 0.16 -1.44 16 9 C 0.06 1.17 4.96 86.31 0.43 1.60 16 10 N -0.53 -15.04 4.63 -895.22 -4.14 -19.19 16 11 C 0.05 1.42 5.46 86.38 0.47 1.89 16 12 C 0.15 5.41 6.69 86.35 0.58 5.99 16 13 N -0.62 -29.46 2.82 -698.16 -1.97 -31.42 16 14 C -0.25 -14.27 10.08 84.04 0.85 -13.42 16 15 H 0.05 3.19 8.05 -2.91 -0.02 3.17 16 16 C -0.04 -2.24 5.24 84.86 0.44 -1.79 16 17 N -0.96 -60.65 13.97 21.65 0.30 -60.34 16 18 Si 0.95 46.80 24.31 68.60 1.67 48.47 16 19 H -0.27 -12.64 6.58 99.48 0.65 -11.99 16 20 H -0.31 -15.53 7.11 99.48 0.71 -14.82 16 21 H -0.26 -12.38 6.61 99.48 0.66 -11.72 16 22 C 0.12 5.29 4.35 86.35 0.38 5.67 16 23 C 0.05 1.74 5.62 86.38 0.49 2.22 16 24 S 2.42 32.77 4.32 -56.49 -0.24 32.52 16 25 C -0.63 0.72 10.17 113.37 1.15 1.88 16 26 O -0.99 -23.30 18.10 -127.37 -2.30 -25.61 16 27 O -0.97 -23.44 17.40 -122.76 -2.14 -25.57 16 28 H 0.13 -0.93 6.55 -2.39 -0.02 -0.94 16 29 H 0.06 0.44 8.06 -2.39 -0.02 0.42 16 30 H 0.10 -0.10 8.14 -2.38 -0.02 -0.12 16 31 H 0.42 1.90 8.47 -92.70 -0.79 1.11 16 32 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.08 1.07 6.40 -2.39 -0.02 1.05 16 35 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.08 1.62 7.97 -2.39 -0.02 1.60 16 37 H 0.03 0.65 8.13 -2.39 -0.02 0.63 16 38 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.11 2.31 6.16 -2.39 -0.01 2.30 16 40 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.06 2.24 7.95 -2.39 -0.02 2.23 16 42 H 0.26 15.72 8.31 -92.70 -0.77 14.95 16 43 H 0.04 1.55 6.94 -2.39 -0.02 1.53 16 44 H 0.05 2.39 4.61 -2.39 -0.01 2.38 16 45 H 0.09 2.63 7.99 -2.39 -0.02 2.61 16 46 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.17 -1.24 8.14 -2.39 -0.02 -1.25 16 48 H 0.14 -0.17 8.14 -2.39 -0.02 -0.19 16 49 H 0.17 -1.19 6.87 -2.39 -0.02 -1.20 16 Total: -1.00 -96.88 393.46 -4.47 -101.35 By element: Atomic # 1 Polarization: -2.98 SS G_CDS: 0.06 Total: -2.92 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: 6.78 Total: 11.40 kcal Atomic # 7 Polarization: -113.91 SS G_CDS: -8.38 Total: -122.29 kcal Atomic # 8 Polarization: -64.19 SS G_CDS: -4.35 Total: -68.54 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 1.67 Total: 48.47 kcal Atomic # 16 Polarization: 32.77 SS G_CDS: -0.24 Total: 32.52 kcal Total: -96.88 -4.47 -101.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490469275.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.159 kcal (2) G-P(sol) polarization free energy of solvation -96.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds