Wall clock time and date at job start Wed Apr 1 2020 05:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47688 * 2 1 4 4 N 1.46499 * 109.46989 * 120.00535 * 2 1 3 5 5 C 1.36939 * 119.99459 * 274.99629 * 4 2 1 6 6 H 1.08002 * 120.00166 * 0.02562 * 5 4 2 7 7 C 1.38815 * 119.99813 * 180.02562 * 5 4 2 8 8 N 1.31617 * 120.00423 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00051 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47321 * 59.99596 * 9 7 5 11 11 H 1.48496 * 109.47322 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46739 * 299.99757 * 9 7 5 13 13 C 1.52995 * 109.47065 * 240.00020 * 2 1 3 14 14 H 1.09000 * 109.50126 * 184.94111 * 13 2 1 15 15 C 1.53046 * 109.50139 * 305.00334 * 13 2 1 16 16 C 1.53040 * 109.54022 * 181.35211 * 15 13 2 17 17 C 1.53193 * 109.30943 * 298.62950 * 16 15 13 18 18 N 1.46920 * 108.77389 * 54.63814 * 17 16 15 19 19 C 1.34780 * 120.63110 * 126.36407 * 18 17 16 20 20 O 1.21280 * 120.00423 * 179.97438 * 19 18 17 21 21 C 1.50701 * 119.99795 * 0.02562 * 19 18 17 22 22 C 1.52997 * 109.47212 * 179.97438 * 21 19 18 23 23 C 1.52992 * 109.47482 * 179.97438 * 22 21 19 24 24 S 1.81400 * 109.47583 * 179.97438 * 23 22 21 25 25 N 1.65600 * 104.45288 * 180.02562 * 24 23 22 26 26 O 1.42098 * 110.54210 * 291.62608 * 24 23 22 27 27 O 1.42102 * 110.53978 * 68.37524 * 24 23 22 28 28 C 1.46928 * 118.74133 * 306.64033 * 18 17 16 29 29 H 1.09001 * 109.47040 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46962 * 299.99957 * 1 2 3 31 31 H 1.08997 * 109.47025 * 59.99821 * 1 2 3 32 32 H 0.96995 * 120.01031 * 94.99864 * 4 2 1 33 33 H 0.96993 * 120.00253 * 179.97438 * 8 7 5 34 34 H 1.08998 * 109.46057 * 61.32699 * 15 13 2 35 35 H 1.09007 * 109.45420 * 301.37137 * 15 13 2 36 36 H 1.09007 * 109.49325 * 178.68049 * 16 15 13 37 37 H 1.09003 * 109.52615 * 58.59967 * 16 15 13 38 38 H 1.08998 * 109.58758 * 294.85382 * 17 16 15 39 39 H 1.09001 * 109.58370 * 174.42328 * 17 16 15 40 40 H 1.09002 * 109.47060 * 299.99722 * 21 19 18 41 41 H 1.09001 * 109.47380 * 59.99809 * 21 19 18 42 42 H 1.09002 * 109.47153 * 299.99998 * 22 21 19 43 43 H 1.08998 * 109.47533 * 59.99628 * 22 21 19 44 44 H 1.09002 * 109.47103 * 300.00247 * 23 22 21 45 45 H 1.09001 * 109.47066 * 60.00169 * 23 22 21 46 46 H 0.96994 * 120.00169 * 150.00217 * 25 24 23 47 47 H 0.97006 * 119.99799 * 329.99838 * 25 24 23 48 48 H 1.09003 * 109.58862 * 173.14114 * 28 18 17 49 49 H 1.08997 * 109.58643 * 293.57176 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1491 -0.0076 2.3757 6 1 1.8919 1.0403 2.4243 7 6 2.6123 -0.6619 3.5090 8 7 2.9262 -1.9387 3.4497 9 14 2.7900 0.2698 5.1183 10 1 1.4673 0.8057 5.5288 11 1 3.3002 -0.6482 6.1680 12 1 3.7446 1.3929 4.9371 13 6 2.0400 -0.7212 -1.2492 14 1 3.1264 -0.7988 -1.2066 15 6 1.4300 -2.1234 -1.3144 16 6 1.9657 -2.8578 -2.5456 17 6 1.5570 -2.0937 -3.8089 18 7 2.0152 -0.7029 -3.6892 19 6 2.7728 -0.1441 -4.6537 20 8 3.1443 1.0052 -4.5435 21 6 3.1573 -0.9469 -5.8698 22 6 4.0106 -0.0841 -6.8016 23 6 4.4015 -0.8992 -8.0358 24 16 5.4127 0.1239 -9.1410 25 7 5.7609 -0.8689 -10.4198 26 8 4.6315 1.1658 -9.7095 27 8 6.6773 0.3943 -8.5520 28 6 1.6369 0.0653 -2.4952 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 2.2490 -1.6318 1.1526 33 1 3.2502 -2.3957 4.2415 34 1 0.3450 -2.0446 -1.3820 35 1 1.6984 -2.6782 -0.4153 36 1 1.5490 -3.8646 -2.5785 37 1 3.0528 -2.9157 -2.4910 38 1 0.4722 -2.1134 -3.9130 39 1 2.0185 -2.5567 -4.6812 40 1 3.7278 -1.8229 -5.5613 41 1 2.2566 -1.2660 -6.3942 42 1 3.4398 0.7918 -7.1100 43 1 4.9113 0.2355 -6.2775 44 1 4.9725 -1.7749 -7.7270 45 1 3.5010 -1.2191 -8.5601 46 1 5.8950 -0.4924 -11.3036 47 1 5.8310 -1.8270 -10.2850 48 1 2.1510 1.0264 -2.5010 49 1 0.5587 0.2252 -2.4901 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496452288.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:16 Heat of formation + Delta-G solvation = -112.683299 kcal Electronic energy + Delta-G solvation = -28818.023091 eV Core-core repulsion = 24713.900853 eV Total energy + Delta-G solvation = -4104.122238 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.39129 -38.13559 -37.40928 -36.31805 -35.51280 -35.11034 -33.67325 -32.87855 -31.92487 -30.32995 -28.88722 -27.72381 -25.40473 -24.51630 -23.19859 -22.48544 -21.53266 -19.86900 -19.24214 -18.64094 -18.09445 -17.72863 -17.36374 -17.01697 -16.71450 -16.20244 -15.87547 -15.49358 -14.78756 -14.73541 -14.39207 -14.23208 -14.01653 -13.73957 -13.34017 -13.15247 -13.08045 -12.79827 -12.57736 -12.53476 -12.46723 -12.40675 -12.34197 -12.29090 -12.07336 -11.43884 -11.39495 -11.24844 -11.16218 -10.96106 -10.82864 -10.81986 -10.66808 -10.54878 -10.27611 -10.10365 -9.92739 -9.66305 -9.60678 -8.89446 -8.59035 -6.95057 -5.75932 -3.03889 -0.21492 2.41985 2.52962 2.88767 3.25805 3.45066 3.49524 3.50337 3.79337 3.92769 4.37983 4.40158 4.52468 4.59943 4.72526 4.78183 4.93770 4.95647 5.03732 5.10606 5.20635 5.33654 5.43158 5.45763 5.46360 5.55784 5.60451 5.62367 5.76630 5.84493 5.87368 5.99727 6.01954 6.16773 6.22884 6.38192 6.45934 6.52970 6.53330 6.67881 6.73245 6.91591 7.13665 7.35050 7.71549 8.09119 8.43361 9.54479 10.12282 10.47022 11.46877 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020212 B = 0.001866 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.987093 B =15004.235124 C =15432.150057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.179 3.821 3 H 0.048 0.952 4 N -0.722 5.722 5 C -0.236 4.236 6 H 0.069 0.931 7 C -0.015 4.015 8 N -0.935 5.935 9 Si 0.906 3.094 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.286 1.286 13 C -0.103 4.103 14 H 0.073 0.927 15 C -0.115 4.115 16 C -0.136 4.136 17 C 0.106 3.894 18 N -0.608 5.608 19 C 0.510 3.490 20 O -0.541 6.541 21 C -0.132 4.132 22 C -0.099 4.099 23 C -0.624 4.624 24 S 2.615 3.385 25 N -1.253 6.253 26 O -0.961 6.961 27 O -0.957 6.957 28 C 0.115 3.885 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.036 0.964 32 H 0.383 0.617 33 H 0.255 0.745 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.135 0.865 45 H 0.137 0.863 46 H 0.420 0.580 47 H 0.412 0.588 48 H 0.091 0.909 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.935 -5.852 -29.128 29.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.069 3.931 3 H 0.066 0.934 4 N -0.364 5.364 5 C -0.367 4.367 6 H 0.087 0.913 7 C -0.210 4.210 8 N -0.584 5.584 9 Si 0.738 3.262 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.213 1.213 13 C -0.123 4.123 14 H 0.092 0.908 15 C -0.152 4.152 16 C -0.174 4.174 17 C -0.017 4.017 18 N -0.341 5.341 19 C 0.298 3.702 20 O -0.418 6.418 21 C -0.173 4.173 22 C -0.139 4.139 23 C -0.754 4.754 24 S 2.706 3.294 25 N -0.925 5.925 26 O -0.950 6.950 27 O -0.946 6.946 28 C -0.007 4.007 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.218 0.782 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.154 0.846 45 H 0.155 0.845 46 H 0.250 0.750 47 H 0.238 0.762 48 H 0.109 0.891 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.465 -4.071 -28.675 28.966 hybrid contribution -0.149 -1.037 0.854 1.351 sum -0.614 -5.107 -27.821 28.293 Atomic orbital electron populations 1.22563 0.99440 1.00935 0.99851 1.20121 0.91805 0.95311 0.85889 0.93436 1.42418 1.78165 1.10660 1.05177 1.19213 1.36305 0.93881 0.87335 0.91260 1.24720 1.02278 0.96003 0.98046 1.69639 1.51085 1.08686 1.28958 0.86277 0.77762 0.78619 0.83591 1.21337 1.21764 1.21297 1.21693 1.01061 0.95255 0.94337 0.90835 1.21607 1.00252 0.95755 0.97621 1.21954 1.01800 0.98843 0.94840 1.21798 0.99759 0.81158 0.98937 1.48165 1.51667 1.13604 1.20657 1.20556 0.77932 0.87532 0.84208 1.90724 1.54233 1.18023 1.78836 1.21631 1.01604 0.99482 0.94543 1.21070 1.02312 0.97838 0.92639 1.30504 1.16251 1.15309 1.13308 1.04751 0.75594 0.74432 0.74588 1.53262 1.91208 1.21547 1.26476 1.93619 1.72311 1.53296 1.75804 1.93646 1.40000 1.82722 1.78264 1.21718 1.00294 0.95747 0.82939 0.93104 0.92923 0.94474 0.78215 0.93546 0.91594 0.90557 0.90873 0.91534 0.91219 0.90170 0.88331 0.88474 0.89184 0.89112 0.84641 0.84461 0.75041 0.76161 0.89082 0.91131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.90 8.76 37.16 0.33 -2.57 16 2 C 0.18 3.46 2.67 -67.93 -0.18 3.28 16 3 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 4 N -0.72 -17.65 5.06 -53.43 -0.27 -17.92 16 5 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 6 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 7 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 8 N -0.94 -27.99 13.06 55.49 0.72 -27.26 16 9 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 C -0.10 -1.64 2.26 -90.72 -0.20 -1.84 16 14 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 15 C -0.11 -1.59 4.52 -26.69 -0.12 -1.71 16 16 C -0.14 -1.41 6.08 -26.61 -0.16 -1.57 16 17 C 0.11 0.91 6.34 -3.71 -0.02 0.89 16 18 N -0.61 -7.15 2.98 -173.03 -0.52 -7.66 16 19 C 0.51 6.27 7.70 -10.98 -0.08 6.18 16 20 O -0.54 -8.90 15.40 5.56 0.09 -8.81 16 21 C -0.13 -0.96 4.05 -27.88 -0.11 -1.08 16 22 C -0.10 -0.77 4.51 -26.74 -0.12 -0.89 16 23 C -0.62 -2.34 6.17 37.15 0.23 -2.11 16 24 S 2.62 17.06 5.97 -107.50 -0.64 16.42 16 25 N -1.25 -3.47 9.36 60.35 0.57 -2.91 16 26 O -0.96 -10.16 18.10 -57.54 -1.04 -11.20 16 27 O -0.96 -10.62 18.10 -57.54 -1.04 -11.67 16 28 C 0.12 1.61 5.56 -3.93 -0.02 1.59 16 29 H 0.05 0.86 6.38 -51.93 -0.33 0.53 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.04 0.53 6.46 -51.93 -0.34 0.20 16 32 H 0.38 9.83 6.36 -40.82 -0.26 9.57 16 33 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.07 0.87 6.43 -51.93 -0.33 0.54 16 35 H 0.08 1.26 6.74 -51.93 -0.35 0.91 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.45 5.93 -51.93 -0.31 0.14 16 40 H 0.10 0.53 7.69 -51.93 -0.40 0.13 16 41 H 0.10 0.46 7.94 -51.93 -0.41 0.05 16 42 H 0.09 0.77 8.10 -51.93 -0.42 0.35 16 43 H 0.09 0.82 8.10 -51.93 -0.42 0.40 16 44 H 0.14 0.16 8.14 -51.92 -0.42 -0.26 16 45 H 0.14 0.17 8.14 -51.92 -0.42 -0.26 16 46 H 0.42 0.92 8.96 -34.47 -0.31 0.61 16 47 H 0.41 -0.09 8.96 -34.47 -0.31 -0.40 16 48 H 0.09 1.44 7.01 -51.93 -0.36 1.08 16 49 H 0.07 0.92 6.33 -51.93 -0.33 0.59 16 LS Contribution 395.57 15.07 5.96 5.96 Total: -1.00 -39.58 395.57 -9.73 -49.31 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -7.81 Total: 5.29 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -0.72 Total: -7.02 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: 0.50 Total: -55.75 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -2.00 Total: -31.68 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Atomic # 16 Polarization: 17.06 SS G_CDS: -0.64 Total: 16.42 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -39.58 -9.73 -49.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496452288.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.376 kcal (2) G-P(sol) polarization free energy of solvation -39.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds